mRNA_E_fasciculatus_S2_contig9028.17121.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9028.17121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE) HSP 1 Score: 470 bits (1210), Expect = 9.780e-160 Identity = 227/272 (83.46%), Postives = 243/272 (89.34%), Query Frame = 3
Query: 984 KSPIGEMMQYAADKRVARLGYIGKTFGRGPLTLTPDLTDAWRTGTVSDQQLRDTLNGGTFIIDNTEKNSGADKTCYATLKNDSVTAMIREGTRMGGLCFPRRGNHHQYGRLTGSEADGVAWSGSECMLFAKDGGMDGGMTNPHVDVQSVPGGTGKLFHMPAAGVIRRVNHPDAQGPAKQAIVVHADDMPRVIRDLLINTDKASISQYGGPPRTLPEFARVLKSKGIRFVVMNFPARCSYALPARCAHVFITIGLVESSVWHPVYKQDMKCSV 1799
KSP+GEMMQYAAD+RVARLGYIGKT GRGPL LTPDLTDAWRTG V+DQQLRDTLNGGTF IDNTE+N D+TCYAT++ND+VTAMIREGTRMG LCFPRRGNH + GRLTG+ ADGVAWSGSECMLFAKDGGM TNPHVDVQSVPGGTG + HMPAAGVIRRVNH DAQGPAKQAIVVHADDM RVI L INT K S SQYGGPPRTL EFARVL+++GIRFVV+NFP RCSYALPARCAH F+TIGLVESS WHPVYKQDMKCSV
Sbjct: 85 KSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKSRDRTCYATMENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGM----TNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWHPVYKQDMKCSV 352
BLAST of mRNA_E_fasciculatus_S2_contig9028.17121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI) HSP 1 Score: 447 bits (1151), Expect = 2.010e-145 Identity = 233/311 (74.92%), Postives = 251/311 (80.71%), Query Frame = 2
Query: 53 PACLLLPPCSRGHTHHDYHDRASARWIGSSG*PILIVPPRRNRTNPPKGLGKGARRKSGRRRKRPRPVTLPPRPTPVRDARDAVQNLMASLDVA--QSRSGATEVACQNFRETDFGKEVMHGLHVDGIVNIPYGESEEDALSMAGVVCGAAQDLVLGEKPHKERIMSKGETRYGLEAVYMGGGTVAAFKKIASLLGAVLCAVVDGASAGVVDHKHVVVANAVGTGVQMWHRDGRAKEVLDKTDPAHRDKRTRPEPHPFSPVTAFQENTVLHVVKGSHNRGEENDFSQDAADIHHIPIGYIAIPLVLEGDAP 979
PACLLLPPCSR THHDYHDR SARWI S G PILIVPPRRN TNPPKG G RP DARDAVQNLMASLD A +++SGA EVACQ+FRET FGKEVMH LHVDGIVNIPYG SE DALSMAGVV GAAQDLVLGEKPH+ER+ KG+TRY LEA+YMGGG VAAF++IASLL AVLCAVVDGAS GVV HKHV +ANA+GTGVQMWHRDGRAKEVL KT+P+H+D R RPEPHPFS V AF+ENTVLHVV+GSHNRG+ENDFSQDA HHI IGY AIPLVLEGDAP
Sbjct: 23 PACLLLPPCSRRLTHHDYHDRVSARWIESGGKPILIVPPRRNGTNPPKGPGXXXXXXXX----XXXXXXXXARP----DARDAVQNLMASLDAAAAENQSGAIEVACQDFRETAFGKEVMHDLHVDGIVNIPYGTSEADALSMAGVVRGAAQDLVLGEKPHRERVKIKGQTRYALEAIYMGGGAVAAFEEIASLLAAVLCAVVDGASGGVVTHKHVALANAMGTGVQMWHRDGRAKEVLAKTNPSHKDNRKRPEPHPFSAVIAFEENTVLHVVRGSHNRGKENDFSQDAPHAHHITIGYAAIPLVLEGDAP 325
BLAST of mRNA_E_fasciculatus_S2_contig9028.17121.1 vs.
Match: hypothetical (protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E52) HSP 1 Score: 275 bits (703), Expect = 6.480e-81 Identity = 133/160 (83.12%), Postives = 144/160 (90.00%), Query Frame = 2
Query: 473 MAGVVCGAAQDLVLGEKPHKERIMSKGETRYGLEAVYMGGGTVAAFKKIASLLGAVLCAVVDGASAGVVDHKHVVVANAVGTGVQMWHRDGRAKEVLDKTDPAHRDKRTRPEPHPFSPVTAFQENTVLHVVKGSHNRGEENDFSQDAADIHHIPIGYIAI 952
MAGVVCGAAQDLVLGEKPH+ER+ KG+TRY LEA+YMGGGTVAAFK+IASLL AVLCAVVDGAS GVV HKH +ANA+GTGVQMWHRDGRAKEVL KT P+H+DKRTRPEPHPFS V AFQENTVLHVV+GSHNRGEENDFSQDA HHIPIGY A+
Sbjct: 1 MAGVVCGAAQDLVLGEKPHRERVKIKGQTRYALEAIYMGGGTVAAFKEIASLLAAVLCAVVDGASVGVVTHKHAALANAMGTGVQMWHRDGRAKEVLAKTHPSHKDKRTRPEPHPFSAVIAFQENTVLHVVRGSHNRGEENDFSQDAPHAHHIPIGYAAV 160
BLAST of mRNA_E_fasciculatus_S2_contig9028.17121.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI) HSP 1 Score: 166 bits (419), Expect = 6.050e-42 Identity = 103/270 (38.15%), Postives = 146/270 (54.07%), Query Frame = 3
Query: 978 LKKSPIGEMMQYAADKRVARLGYIGKTFGRGPLTLTPDLTDAWRTGTVSDQQLRDTLNGGT-FIIDNTEKNSGADKTCYATLKNDSVTAMIREGTRMGGLCFP----RRGNHHQYGRLTGSEADG-VAWSGSECMLFAKDGGMDGGMTNPHVDVQSVPGGTGKLFHMPAAGVIRRVNHPDAQGPAKQAIVVHADDMPRVIRDLLINTDKASISQYGGPPRTLPEFARVLKSKGIRFVVMNFPARCSYALPARCAHVFITIGLVESSVWHP 1769
+ +S +G + + A +++L +G G +L+ + D W G V D LRD G T + I N E+N D Y T++ + T ++R+ TRMG LC+P G + G LT + G V W+GSE FA G +T+ HVD V K +PAAG +R VN D +GPAK+AIVV A DM RV+R ++ K QYGG L A LK+ I FVV++FP CSYA+P +CAH+ +T+ LVE+ W+P
Sbjct: 127 ITRSVMGAVCKAAVGMHISKLRNLGVRRGTSMFSLSEEFVDCWVEGNVGDNMLRDAFGGKTTWTIQNFEENQRVDACSYQTIECAAATGIVRK-TRMGALCYPDTADTAGTDNTGGELTKPVSIGEVLWAGSEVTAFAT---RRGSVTHIHVDALEV---NEKPLFLPAAGAMRSVNRGD-RGPAKRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWNP 388
BLAST of mRNA_E_fasciculatus_S2_contig9028.17121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.750e-39 Identity = 101/265 (38.11%), Postives = 149/265 (56.23%), Query Frame = 3
Query: 984 KSPIGEMMQYAADKRVARLGYIGKTFGRGPLTLTPDLTDAWRTGTVSDQQLRDTLNGG-TFIIDNTEKNSGADKTCYATLKNDSVTAMIREGTRMGGLCFPRRGNHHQYGRLTGSEA-DGVAWSGSECMLFAKDGGMDGGMTNPHVDVQSVPGGTGKLFHMPAAGVIRRVNHPDAQGPAKQAIVVHADDMPRVIRDLLINTDKASISQYGGPPRTLPEFARVLKSKGIRFVVMNFPARCSYALPARCAHVFITIGLVESSVWHPV 1772
+S +G + A + + R+G +G G ++P ++W G + +L+ T+ N E++ D + T++ + ++R TRMGGLC P R + G LTG+ + G +WSGSE FA GG+T+ HVD Q V G + ++PAAG +R VN GPAK+AI++ A DM RV+ L ++ +K S SQY G L A L+ IRFVV++FP CSYA+PARCAH+F+T+ LVES WHP+
Sbjct: 360 RSVMGTACKSALARNLTRIGGLGGRNGTSMFGVSPSFVESWNEGVIDGDELKKAFGTNPTWTTQNFEEDDKVDVLSFNTIECVGASDLVRN-TRMGGLCHPDR-PPTRGGVLTGTTSVRGKSWSGSEVTAFAM---RTGGVTHSHVDPQMVHG---EHLYLPAAGTMRSVNR-RGSGPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPI 615 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9028.17121.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9028.17121.1 >prot_E_fasciculatus_S2_contig9028.17121.1 ID=prot_E_fasciculatus_S2_contig9028.17121.1|Name=mRNA_E_fasciculatus_S2_contig9028.17121.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp MASLDVAQSRSGATEVACQNFRETDFGKEVMHGLHVDGIVNIPYGESEEDback to top mRNA from alignment at E_fasciculatus_S2_contig9028:2865..6163- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9028.17121.1 ID=mRNA_E_fasciculatus_S2_contig9028.17121.1|Name=mRNA_E_fasciculatus_S2_contig9028.17121.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3299bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9028:2865..6163- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9028:2865..6163- >mRNA_E_fasciculatus_S2_contig9028.17121.1 ID=mRNA_E_fasciculatus_S2_contig9028.17121.1|Name=mRNA_E_fasciculatus_S2_contig9028.17121.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9028:2865..6163- (Ectocarpus fasciculatus EfasUO2)back to top |