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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9015.17111.1 vs.
Match: G (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA06_9PHAE) HSP 1 Score: 272 bits (696), Expect = 1.160e-75 Identity = 160/360 (44.44%), Postives = 219/360 (60.83%), Query Frame = 1
Query: 835 MEPAKLVVAGDEWEVLAEGLQAGRPYVSKDGDVRLHVQEGSLVGPVPDSINLHHSVQLLKSNGRDYITDTTIHCPPNVSFQDPLLLDFLLGDPAISGGKGALQDVLQSYQVLRKNAGDTTWEPIEQDDVGLVDEAGATYLRARIFHFTWFCFGKKSDVSSGYEDDTSNSDDQSFLISNPTTKTLFLVQVPFKFASETHSRHAATYDLGINAEVAGVGGGANMTLGFERESRTVWVSYPTSEAPSQRVVLPGAKKQTLYLRERGSSERLLLCT---LEDEPSSSTATPAS-PSSGARAAPPVRGTAESPIRVLRFYGDPTIVGEKGWIFHE-RVFEKSLNFARVDTKTSGLRDVAMALAGL 1899
+EP +L VAGDEWE+LAE LQAG Y SKDG +RL VQ GSL GP P + L S QLL G+DY T+T +HCPP+ F++PLLLDF L DPA+S GK L+ VL+ YQ+LR + G+ W+P+E+ D+ +V++ GA YLRA+++HFT F K D + G S++D Q L+ N T + L LV +P K+ + RHA L + + G G G N+ FE RT +V P EAPS + VLPGA++Q L LRE ERL++C+ + ++PSS+ ATP S PS G A + E R++ FY DP + G G + H+ R+ + + V K L+ VAM LAGL
Sbjct: 366 VEPQELGVAGDEWELLAEKLQAGENYPSKDGRIRLSVQRGSLSGPEPGPVRLRFSTQLLSCKGQDYFTNTIVHCPPDNHFEEPLLLDFFLDDPAVSNGKATLKQVLERYQILRMSHGENEWQPLERHDMTMVEDRGAIYLRAQVYHFTLFSCCMKCDPTGGMTW-FSHTDKQGVLVHNDTNQQLLLVVLPTKYVAVCDKRHAV--QLTVGGSLPG-GEGINVGGSFEPHVRTEYVWLPQGEAPSSQEVLPGAQEQKLRLREVECVERLIICSTCFVPEKPSSTQATPPSRPSPGQMAPLSTVRSGEDEYRLVEFYDDPMVKGGDGLVIHQSRLDARPRDECLVRAKGVDLKHVAMFLAGL 721
BLAST of mRNA_E_fasciculatus_S2_contig9015.17111.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 254 bits (650), Expect = 3.930e-67 Identity = 157/368 (42.66%), Postives = 214/368 (58.15%), Query Frame = 1
Query: 817 SDIEAAMEPAKLVVAGDEWEVLAEGLQAGRPYVSKDGDVRLHVQEGSLVGPVPDSINLHHSVQLLKSNGRDYITDTTIHCPPNVSFQDPLLLDFLLGDPAISGGKGALQDVLQSYQVLRKNAGDTTWEPIEQDDVGLVDEAGATYLRARIFHFTWFCFGKKSDVSSGYEDDTSNSDDQSFLISNPTTKTLFLVQVPFKFASETHSRHAATYDLGINAEVAGVGGGANMTLG--FERESRTVWVSYPTSEAPSQRVVLPGAKKQTLYLRERGSSERLLLCTLEDE---PSSSTATPASPSSGARAAP-PVRGTAESPIRVLRFYGDPTIVGEKGWIFHE-RVFEKSLNFARVDTKTSGLRDVAMALAGL 1899
+DI + E + + EWE+L E LQAG Y S+DG +RL VQ GSL GP P + LH + QLL G+DY T T +HCPP+ FQ+PLLLDF L DPA+ GKGAL+ VL+ YQ+LR + G+ W+P+ ++D+ LV++ +TYLRA I HFT F K D + G ++SD Q L+ N + + LFLV +P K+ + RHA +G + GG + +G FER RT +V P EAPS + VLP A++Q L LRE G ERLL+C+L P S+ ATP S SS + P + E RV++FY DP + G G + H+ R+ + V K L+ VAM LAGL
Sbjct: 1958 ADIISGFESKESAIDWGEWELLTETLQAGENYRSRDGGIRLSVQHGSLSGPGPGPVRLHLATQLLSCKGQDYFTTTIVHCPPDHRFQEPLLLDFFLDDPAVRNGKGALKKVLKRYQILRMSHGEHEWQPLRREDMFLVEDRDSTYLRAHIDHFTVFSCCMKCDPTCGITW-LNHSDKQGVLVHNNSNQQLFLVVLPTKYVAVCDKRHAVQLAVG-----GSLPGGEGIEVGGRFERNKRTEYVWLPQGEAPSGQEVLPWAQEQRLRLREVGCVERLLICSLSPVRGGPLSTQATPPSQSSPRQMTPVSTVPSGEGQYRVVKFYEDPIVKGGDGLVIHQSRLNVPPRDECCVRAKGVNLKHVAMVLAGL 2319
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 254.6 |
| Seed ortholog evalue | 7.3e-65 |
| Seed eggNOG ortholog | 2880.D8LGG5 |
| Model size | 2507 |
| KEGG ko | ko:K10407 |
| KEGG Pathway | ko05132,map05132 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| EggNOG free text desc. | determination of stomach left/right asymmetry |
| EggNOG OGs | COG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759 |
| Cds size | 1149 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03019,ko04812 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842556.2871768-UTR-E_fasciculatus_S2_contig9015:14..538 | 1696842556.2871768-UTR-E_fasciculatus_S2_contig9015:14..538 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9015 15..538 - |
| 1696842556.353324-UTR-E_fasciculatus_S2_contig9015:2904..2942 | 1696842556.353324-UTR-E_fasciculatus_S2_contig9015:2904..2942 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9015 2905..2942 - |
| 1696842556.363338-UTR-E_fasciculatus_S2_contig9015:3227..3332 | 1696842556.363338-UTR-E_fasciculatus_S2_contig9015:3227..3332 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9015 3228..3332 - |
| 1696842556.3729076-UTR-E_fasciculatus_S2_contig9015:4009..4700 | 1696842556.3729076-UTR-E_fasciculatus_S2_contig9015:4009..4700 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9015 4010..4700 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842556.3091018-CDS-E_fasciculatus_S2_contig9015:538..1357 | 1696842556.3091018-CDS-E_fasciculatus_S2_contig9015:538..1357 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9015 539..1357 - |
| 1696842556.32661-CDS-E_fasciculatus_S2_contig9015:2340..2642 | 1696842556.32661-CDS-E_fasciculatus_S2_contig9015:2340..2642 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9015 2341..2642 - |
| 1696842556.3395271-CDS-E_fasciculatus_S2_contig9015:2876..2904 | 1696842556.3395271-CDS-E_fasciculatus_S2_contig9015:2876..2904 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9015 2877..2904 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9015.17111.1 >prot_E_fasciculatus_S2_contig9015.17111.1 ID=prot_E_fasciculatus_S2_contig9015.17111.1|Name=mRNA_E_fasciculatus_S2_contig9015.17111.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=383bp
MEPAKLVVAGDEWEVLAEGLQAGRPYVSKDGDVRLHVQEGSLVGPVPDSI NLHHSVQLLKSNGRDYITDTTIHCPPNVSFQDPLLLDFLLGDPAISGGKG ALQDVLQSYQVLRKNAGDTTWEPIEQDDVGLVDEAGATYLRARIFHFTWF CFGKKSDVSSGYEDDTSNSDDQSFLISNPTTKTLFLVQVPFKFASETHSR HAATYDLGINAEVAGVGGGANMTLGFERESRTVWVSYPTSEAPSQRVVLP GAKKQTLYLRERGSSERLLLCTLEDEPSSSTATPASPSSGARAAPPVRGT AESPIRVLRFYGDPTIVGEKGWIFHERVFEKSLNFARVDTKTSGLRDVAM ALAGLSAVPAVKQPSEKKTPTGSLSFIRSVFR* back to topmRNA from alignment at E_fasciculatus_S2_contig9015:15..4700- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9015.17111.1 ID=mRNA_E_fasciculatus_S2_contig9015.17111.1|Name=mRNA_E_fasciculatus_S2_contig9015.17111.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4686bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9015:15..4700- (Ectocarpus fasciculatus EfasUO2) AGAAAAAAGGGGGGGAAGGAAATGATGCAGTGCGCTCCTCCCCCTAAATA
CCAGTTGATTGCATATATTGTATAAGTCGCCGGCCGTCCTTCCAGCACCT
CACAGGGCTCTCCAGGAACCTACTGTAGGATAAGAATGTTTCTGTCAAGA
TCCAGCTGGGCTACACGTACAATGATCCTTGTCGGTGAAGCCGAAAAGAG
AACATACTCCAATGCACCCCCAACAGGAAGAGGACAGGGAGCAAACGCCC
GCCATGGGTTGAATACCTGGCCCTAGACAACGGGACGTGGTGCTGCATCT
GCTAGCGGGTTACGGAATATATCACCCCAACTAGAAATAGTGCAGTTAAG
ACGTTTTCCTACCTTTTTTCTAGTTGTTTTCCTCCACGACGCACATGTTG
ATGTCAAACATAACTCGATTGCCTTGGGGTTGACCGCAACCACAAAAACG
AATAACCGATCGGTAAAAGACGCACACACTGAGGCATTTGGTCGTGATGG
GATGGTGGTGGAAAGGACTCTCGACATAGCATAGCTATGTTTAGAGCTGA
CGTGACTTGGCGACTTCGACACTGTTTCTTCGTGGTTCGTGATCCCCTTT
GCGTGCTTCATCTCGCCTGGTCTACTCTCCGGTGATCCCGTCCGGGGCTT
GACGTTTCGTCTAGTTGCGCTTCGCAATCTTCACAAGGCAGGCAAGACAA
TGTCCAGCATAGATGAATGGTTCATACGTGAGATCTGCATGTCTTGGGGT
TTCTCGTGTTTTTACCACACGCCGCTGGTATTGTCCTATCGTGTTTCTCA
CCCGGGCCCATAATCCGAAAATCAATCTGGCGCGAGGCTGTATAGCGTGC
CCTCAGAGTGAAATTCTTACTTGTCCAACATATACGGCTGACCCTCTCAA
TCCCCTACCACGTGCGCCCATCCCAAGGGTGCTCACAGGCAGCAATGTGC
TGATGTGCCGTAGTCTGGTTGAGCATTCTACCTTTTTTCTCTTTTCCCTG
TGCAGTTGTTGCCCCCCCGGGCAGATTCGAGGGCTGCTGTCTATTACACC
TATTGTACGGTATGCAGAAAAATACCACGAACGCAGTCTGTCCCCACATC
GAATACGGTGGCGAAACGTCCTTGACAAAGGTTGCAGATCTTGGGCAGTG
TTTGTGGCGCTAGCGTTGTAGGGCTTGAAAGTAGGGTTTTGTTTAGCTGA
TCTCTCCATCAGCTGGCTGTTGGAGATATGTCCTTGTCGAATGGTTCCAC
CTGCCGTACATGCCTTTTTGCGTAGGCGATACAAGTTCACATTTCCCCCG
TTCGTTTGTCCCGTACAGTACACGCATGCAAATGAGAAGACATTCAAACT
CCTTTTCAATTCCAACAGGAGGATCGCCGGTGGGTGGAACGAAAAGCGAA
GGCCAGAGCGGCCCGAAACAGCAAGAGTTTCCTGGCTCCGAAGTTCACAG
GGCCTTTTGTGCGTCCAGCAGTTGTGAGTTCATCGGGGATTGTGTGAGAT
CGTGTTCTTCGCTTCGACCATTCATTACGGTTGTTGAGCACACAGCGATA
GCCACGATCTTTGTTCAGTTTGAGACAAACAGCGCCCCAACATAGACCAG
GATTCGTGGTATGATAGCCTGGTATTCCCACTGCTTGTTTGTACCCTGCT
GACGGGAGAGGGGTTGCAGAGCCGCGGTAGAATTGAATTGATTTCGATTC
TGAGCAGTTCACCGCCAACTTTTGGTTCGATCACCCCCGTCCACGATCTC
GGCAACAGAGGATGTCGCCCCCTTCCGGAGCGATATCGAGGCCGCGATGG
AGCCGGCCAAGTTGGTTGTCGCAGGTGAGAAGTGCCTTAGTCAAGTACGA
GTGGAAGGGATGTAAAAAAAATAAGCCTCGCGACAAAACATCTAATAAAA
AATGTGTGATCGTCACAAACGTGTGGGCACAGACGGCGTTGTGCATGGAC
GAGACCCAAGCATTCAGCCGCCGCAAGGTTTCTTCCCGTTTGTGTTCTCA
TTCTGTCGAGATCGAAACTTCGGGGATGCCTCCTGGTCGTGATAATGTGT
TGCAACAGGTGACGAGTGGGAAGTGCTGGCGGAAGGGCTGCAAGCTGGCA
GGCCATACGTCTCGAAGGATGGTGACGTCCGTCTACATGTCCAGGAAGGC
AGTCTTGTCGGTCCCGTGCCGGATTCCATCAACCTGCACCATTCTGTACA
GCTTCTGAAGTCCAACGGGCGAGACTACATCACAGACACCACCATCCACT
GTCCCCCGAATGTTAGCTTTCAGGACCCCCTTCTGCTTGACTTCTTGTTG
GGAGACCCTGCTATCAGCGGCGGGAAAGGTGCTCTCCAAGACGTTCTCCA
GAGCTACCAGGTGCAGAGTACACCCCCAACCAGGGACGAAATGTTTTGTA
CTTGTATGAAACTTAGACCTGTTGCATGTCGAAACGGGGGGAACTTGTTC
AGCCACGAGTGACCGGCTTCGTAGTCGATTCGAATGCGGAAAATGCTCAA
CTCAGCCAGCAGTCAAGGTTAATAGAACATGAAGTGCATCAGCCAGAAAG
GGACCACCGTTTGACTCGAGGGATCGTCCGACTTATCATGTACATATGAC
ACAGGAACTTTCCGACGGCGGCAAAAGTTTGACCAGGGCCCTGTCGCCCA
CGAAACAATGTGTGTAAATCATGAGAACTTGACCACCTTTTGTGAGCCAG
ATTAAGAACCCCTTACACAACTACATGAACCTGCCTGGTACCACATGTAG
CGGTCGTTTGGTAGCTAGCCTAACCTGGAACAAGGAATACCCCAGCCAGC
CTCGGCCAAAACTGGGGGTTCACTGCATATTTTATGTGTGTAAAACATCC
CTACATAGACTGTCTTGTCACGTTCCGCGCTTTCTTTCGGCAAGAAAGAT
GCAAGAGCAGACCCACCCACCCTACTAACCGCGCGCGGTGCTCGTATATG
AACGTCCTTGCTCATGTGTCGCAAGAAATTGAGTTCGGAAAGTGGAGTTG
ACAAAGGCACTACGACTGCCAAAATTATTTTTTGCCTTTCCCACGGGTGC
ATAGCATCCTGTTTCCGATCTGAGTCTCTTTCGGTTCTTGACATACGCAC
CTTTTGCTCGCCAAACCCGCATGCAGCAAAAGAAAATGCTGAAGCCGCCG
AATGCAATGCTTACACTCGCGTTGAACGATAATGAACAATCTTGCAAGCG
TAGGTTTTAAGTAGACTCCGCGGTTGTTTTCGTCGTTCGCTCTGAAGGGT
GAAGGGTCGATAGATAGTTGATCAGCTCCCTGCGGCATGTACCGCGGATA
CATACTCGATGTGCGCGGGAATCCTCTGCACCGTTTTTTGCAGGTTCTGC
GCAAGAATGCGGGTGACACTACATGGGAGCCAATCGAGCAAGACGACGTG
GGCCTGGTGGACGAAGCTGGTGCCACCTATCTGAGGGCTCGCATTTTCCA
CTTCACATGGTTCTGCTTCGGAAAGAAGTCCGACGTCTCTTCCGGCTACG
AGGACGATACAAGTAATTCCGACGATCAGAGCTTTCTCATTTCCAACCCA
ACCACCAAAACTCTATTTCTGGTCCAAGTGCCCTTCAAGTTCGCGAGTGA
AACCCACTCGAGACATGCCGCCACGTACGACTTGGGTATCAATGCGGAGG
TTGCTGGAGTAGGCGGGGGTGCAAACATGACCTTAGGGTTCGAGCGGGAA
TCCCGAACCGTGTGGGTTAGTTATCCAACCAGCGAAGCCCCGTCGCAACG
AGTGGTCTTGCCAGGGGCGAAAAAGCAGACGCTGTATTTGCGAGAGAGGG
GAAGCTCTGAACGTCTGCTTCTCTGTACCCTAGAGGATGAGCCGTCCTCG
AGCACAGCGACACCCGCTTCTCCTTCGAGCGGCGCCCGGGCAGCCCCTCC
CGTCCGTGGGACAGCCGAATCTCCCATCCGAGTTTTGCGATTCTATGGCG
ACCCAACGATCGTCGGGGAGAAAGGCTGGATCTTTCATGAGCGAGTGTTT
GAGAAGTCCCTGAATTTTGCTCGGGTTGATACTAAAACGTCCGGCCTTCG
TGATGTCGCCATGGCCCTAGCAGGGTTGTCGGCCGTTCCGGCGGTAAAAC
AGCCAAGCGAGAAAAAGACCCCCACAGGAAGTTTAAGTTTCATAAGAAGT
GTATTTCGGTGATAGAAAGCGCCGACGGGGTAGTATGTCGTGCGTTCGCG
TTCGTGAGTGGAAACTATGTTGGTGGCGTATCTTGTCCGTTCTACCAGGA
GCGCTCTTTCTCTTGTTGGGTTTCTGGACTCCGAGCTTCTCCCTGTGCGC
AGGCAAGAACGAAACGAAGCTGAGAATGGAAAACAGTCGCGTGTTTTAGT
TTCTCCGTTATATATGCAAGCACCCGTTGGGACGTCCACCTCACGCCTTG
TGTGTAATAATAGCGCATGTGTCATAGGATTAGAAGAGTGCGGAGGAATA
GAGAGGAGAATGGTTCCTGAGAACCATTCTGGGGAATGCACCTCCCCGCG
GAAGGATAAAAGAGGGGACAGATCTAGCTGTCCCCTCCCATTGTTGTGGC
TCATTCGGAGCCACACCCGGGTCAGACCTTCTGATACCCGAGCAACAGCT
ACTGGCTGCTGCTATCCACAAGAGTAATAACAAGTGAGTTCACCATTGGG
ACAACCAGACTTCACCACGCGTGCATCCCCTTACAC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9015:15..4700- >mRNA_E_fasciculatus_S2_contig9015.17111.1 ID=mRNA_E_fasciculatus_S2_contig9015.17111.1|Name=mRNA_E_fasciculatus_S2_contig9015.17111.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9015:15..4700- (Ectocarpus fasciculatus EfasUO2) ATGGAGCCGGCCAAGTTGGTTGTCGCAGGTGACGAGTGGGAAGTGCTGGC GGAAGGGCTGCAAGCTGGCAGGCCATACGTCTCGAAGGATGGTGACGTCC GTCTACATGTCCAGGAAGGCAGTCTTGTCGGTCCCGTGCCGGATTCCATC AACCTGCACCATTCTGTACAGCTTCTGAAGTCCAACGGGCGAGACTACAT CACAGACACCACCATCCACTGTCCCCCGAATGTTAGCTTTCAGGACCCCC TTCTGCTTGACTTCTTGTTGGGAGACCCTGCTATCAGCGGCGGGAAAGGT GCTCTCCAAGACGTTCTCCAGAGCTACCAGGTTCTGCGCAAGAATGCGGG TGACACTACATGGGAGCCAATCGAGCAAGACGACGTGGGCCTGGTGGACG AAGCTGGTGCCACCTATCTGAGGGCTCGCATTTTCCACTTCACATGGTTC TGCTTCGGAAAGAAGTCCGACGTCTCTTCCGGCTACGAGGACGATACAAG TAATTCCGACGATCAGAGCTTTCTCATTTCCAACCCAACCACCAAAACTC TATTTCTGGTCCAAGTGCCCTTCAAGTTCGCGAGTGAAACCCACTCGAGA CATGCCGCCACGTACGACTTGGGTATCAATGCGGAGGTTGCTGGAGTAGG CGGGGGTGCAAACATGACCTTAGGGTTCGAGCGGGAATCCCGAACCGTGT GGGTTAGTTATCCAACCAGCGAAGCCCCGTCGCAACGAGTGGTCTTGCCA GGGGCGAAAAAGCAGACGCTGTATTTGCGAGAGAGGGGAAGCTCTGAACG TCTGCTTCTCTGTACCCTAGAGGATGAGCCGTCCTCGAGCACAGCGACAC CCGCTTCTCCTTCGAGCGGCGCCCGGGCAGCCCCTCCCGTCCGTGGGACA GCCGAATCTCCCATCCGAGTTTTGCGATTCTATGGCGACCCAACGATCGT CGGGGAGAAAGGCTGGATCTTTCATGAGCGAGTGTTTGAGAAGTCCCTGA ATTTTGCTCGGGTTGATACTAAAACGTCCGGCCTTCGTGATGTCGCCATG GCCCTAGCAGGGTTGTCGGCCGTTCCGGCGGTAAAACAGCCAAGCGAGAA AAAGACCCCCACAGGAAGTTTAAGTTTCATAAGAAGTGTATTTCGGTGA back to top
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