mRNA_E_fasciculatus_S2_contig9013.17110.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9013.17110.1
Unique NamemRNA_E_fasciculatus_S2_contig9013.17110.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9013.17110.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9013contigE_fasciculatus_S2_contig9013:2076..3504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842556.1830444-CDS-E_fasciculatus_S2_contig9013:2075..23901696842556.1830444-CDS-E_fasciculatus_S2_contig9013:2075..2390Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9013 2076..2390 +
1696842556.2048712-CDS-E_fasciculatus_S2_contig9013:3465..35041696842556.2048712-CDS-E_fasciculatus_S2_contig9013:3465..3504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9013 3466..3504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9013.17110.1prot_E_fasciculatus_S2_contig9013.17110.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9013 2076..3504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9013.17110.1

>prot_E_fasciculatus_S2_contig9013.17110.1 ID=prot_E_fasciculatus_S2_contig9013.17110.1|Name=mRNA_E_fasciculatus_S2_contig9013.17110.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
MCNHCAFLKRHTYPSRSRHANRSRSPLVQASCSNWCRCVRRQRGGSGRAV
GGRATVHLESKEQRQRKGFGGFFIIVRAGGREENGCLVLQGGARFGGGSS
LSCRRDHYRGHLVPGELS
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mRNA from alignment at E_fasciculatus_S2_contig9013:2076..3504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9013.17110.1 ID=mRNA_E_fasciculatus_S2_contig9013.17110.1|Name=mRNA_E_fasciculatus_S2_contig9013.17110.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1429bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9013:2076..3504+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCAACCATTGTGCATTTTTGAAGCGCCACACGTATCCGAGCCGTTC
CAGGCACGCAAATCGCAGCCGCAGCCCCCTCGTGCAAGCAAGTTGCAGTA
ATTGGTGTCGGTGCGTGAGGAGGCAGAGGGGAGGCAGCGGGCGCGCTGTC
GGGGGGAGGGCTACTGTACATCTTGAGAGCAAAGAACAGAGGCAACGAAA
AGGGTTCGGCGGGTTTTTTATTATCGTCCGCGCGGGAGGACGAGAGGAAA
ATGGATGCCTCGTCTTGCAAGGAGGCGCTCGCTTCGGCGGAGGCAGCAGC
CTTAGCTGCCGGAGAGTGAGTGCGTGCCCTGGAGTGGAGAGTACCACCGT
AGCGGAATGATGGAAATTCGAACGCGGATCATCGTGAAACGCATCAAACA
GGCAGATATCTCTGCTGCTGTTGGTGCACTGTACAGCAGGTTGTACATAT
AGTCTAGTCTACACGCAGGAACAGGTAGGGTATGGACGACACATGTTTCC
CGTGATTTTTTGGTTCCCGTTTCCGTGGGGGAGCAATACGGACCTGGGTG
ATGAAGTGGTGTGAGTGCTCTGTATGTACGCGAGCCGGGATCTTCACATT
GTGTTTTTTTCGAGGCGCACAGCAGGCAAGCAACGTCCGCAACACTGGCT
GCTTGTACGTGTGTGTGACGTTTACGTTTTCGCTCGGGACATGATTTCCC
CGCCTTGGGGGAGATTCTCTACTTTCATGATGACCGATGACGAGAAGGGG
GGGGGCGGATGCACATGGTTGTGCCAAGCCCTTCGCAGCCGCCGTACAAC
GGACCAAGGCAATCGTGACCGATCCCGCCCAAATTAGACATGGGCATGGT
ATTAAAGGTGGGTTGGGAATCTTGAAGAGGGTTACTTGAAGTCCCCCTCG
ATGATCCTCGATAACCTACTGCACAACAGACCACGTCAGCATGCCAAAAA
GGGACGAAAAAAAGGCAGTGTTATCTTACACTAAACAGAGCACGAGAAGT
GCAACACACGCCGCCACCATCCGTAACAATGTAATAACCGATGATACAAG
CAGTGTGATTTGAGGAGTACGATAGCGGCAAGATCTTTATTTCCATTCCC
GTCCCCTAGAGGCAAACATTGTCGCCTTTGCAGAACCTCCCGCGCGTTGC
CTGTCGGAGGTACGAAAGGACACCCCCCCAACCCCCGCCTCAGTCAACCG
TCAAGATACAGGCTACTGCAAATCGTCTGGGGGGGGTGGTTCGTTCATGT
TATCCATGTGCTTCCTGTGAAAAGAGTCGGATACTGCAGTAGCGTGTATG
CAATAGTCATCATCCCATTGCACACTTCGCCTTCTCTCGTCTGCCGAATG
GTGGCGACCTACCACTGCTGTACCTACCACTGTACATCAGGATCATTACC
GCGGCCATCTCGTCCCAGGAGAACTCTCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9013:2076..3504+

>mRNA_E_fasciculatus_S2_contig9013.17110.1 ID=mRNA_E_fasciculatus_S2_contig9013.17110.1|Name=mRNA_E_fasciculatus_S2_contig9013.17110.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9013:2076..3504+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCAACCATTGTGCATTTTTGAAGCGCCACACGTATCCGAGCCGTTC
CAGGCACGCAAATCGCAGCCGCAGCCCCCTCGTGCAAGCAAGTTGCAGTA
ATTGGTGTCGGTGCGTGAGGAGGCAGAGGGGAGGCAGCGGGCGCGCTGTC
GGGGGGAGGGCTACTGTACATCTTGAGAGCAAAGAACAGAGGCAACGAAA
AGGGTTCGGCGGGTTTTTTATTATCGTCCGCGCGGGAGGACGAGAGGAAA
ATGGATGCCTCGTCTTGCAAGGAGGCGCTCGCTTCGGCGGAGGCAGCAGC
CTTAGCTGCCGGAGAGATCATTACCGCGGCCATCTCGTCCCAGGAGAACT
CTCA
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