mRNA_E_fasciculatus_S2_contig9.17090.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Calponin-homology ((CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI) HSP 1 Score: 499 bits (1285), Expect = 7.750e-176 Identity = 280/330 (84.85%), Postives = 288/330 (87.27%), Query Frame = 1
Query: 22 MAAFGTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSGDTTTVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSGLGSYGIMDRNSVSNANDITFGASASQATPLDGNKDKDADAGVPVPEKATADCPVSAAMSPLVFGGDAVENNNRSWFQARSG 1011
MAAFG RGAGYGLDAELARQREAKYDHSAEDQAR WIEAVTGERVVGPFGDALRDGV ICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDL+EGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKR+FNE+QKQQA+VNASFSKLGMGSAHSMERSQ K ICFGAENAG+GDTTTVG XXXXXXXXXXXXXXXXX Q L SYGIMDRNS SNAND+TFGA +SQA PLDGNK+KDADAGV VPEK TADCPVSAAMSPLVFG D VE NNRSWFQARSG
Sbjct: 1 MAAFGARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNEEQKQQAKVNASFSKLGMGSAHSMERSQISKPG-ICFGAENAGTGDTTTVGKLTKGSHGIQERLPVDQSRSITXXXXXXXXXXXXXXXXXXQPSLSSYGIMDRNSFSNANDVTFGAPSSQARPLDGNKEKDADAGVSVPEKPTADCPVSAAMSPLVFGCDTVEKNNRSWFQARSG 329
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Calponin (homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA) HSP 1 Score: 236 bits (602), Expect = 3.810e-73 Identity = 119/199 (59.80%), Postives = 150/199 (75.38%), Query Frame = 1
Query: 40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSGDTTTV 636
RG GYGLDAELA + AKYD E A+EW+EAVTG + G F +L+DG +C+L+N IKPG +++IN S+MPFKQMENISNFLK+CR +GVAE+SLFETVDLFE KD+GLV+RC+FALGSAVQ + PE+ GP LGAKPH NKR F +Q +QAR++ + +K GSA MER K+ I GAE AG GDT+++
Sbjct: 4 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTG-ITAGAEYAGIGDTSSM 201
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Calponin (homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA) HSP 1 Score: 225 bits (574), Expect = 1.810e-69 Identity = 116/201 (57.71%), Postives = 144/201 (71.64%), Query Frame = 1
Query: 34 GTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSGDTTTV 636
G RG GYGLDAELAR+ A YD++ E A+EWIEAVT + G F AL+DG +CKL+N I+PG V+KIN S MPFKQMENIS +LK CRA+GVAEHSLFETVDL+E KDI LV++C+FALGS +Q + PE+ GP LGAK H NKR F +Q +AR+ + +K GSA MER K I GAE AG+GD+ ++
Sbjct: 3 GARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQSSVPEFHGPHLGAKMHTANKREFTAEQMAKARLGGAITKQTQGSAAVMERLHVTKGG-ITMGAEYAGTGDSGSI 202
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE) HSP 1 Score: 233 bits (593), Expect = 4.380e-68 Identity = 121/199 (60.80%), Postives = 148/199 (74.37%), Query Frame = 1
Query: 34 GTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNAS--FSKLGMGSAHSMERSQARKSMCICFGAENAGSGD 624
G RG GYGLDAELA +REA YD A+EWIE VTGER FG+ L+DG +C L+N IKPGAVR++N+SRMPFKQMEN+SNFLK+CRA+GVAEHSLFETVDL+EGKD+GLVVRC+ ALG VQ +CPEY GP LG K + NKR + E+Q+QQ N+S S L GS+ +MER+ K+ FGA +G+GD
Sbjct: 340 GGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCLHALGQTVQNSCPEYNGPRLGIKQTEANKREWTEEQQQQQLRNSSGAMSNLLAGSSKTMERATILKTGAT-FGAAQSGTGD 537
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN) HSP 1 Score: 201 bits (510), Expect = 7.980e-58 Identity = 103/190 (54.21%), Postives = 133/190 (70.00%), Query Frame = 1
Query: 40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAE 606
RG GYGLDAELA++ KYD+ ED+AR+WIEA+TG + FG+ LRDGV +C+L N I PG +R+I +S+MPFK MEN+S FLK+CR +GV E+ LFETVDLFE K +GLVVRC+ ALG AVQ P + GPTLG K +N+R F E+Q QAR S L +GS +MER ++ + FGA+
Sbjct: 9 RGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCLHALGRAVQKNYPSFNGPTLGVKEAAKNERQFTEEQIAQARNAPSL--LSLGSMRTMERLDVSRANDVTFGAD 196
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMC3_PYTOL) HSP 1 Score: 206 bits (524), Expect = 3.750e-57 Identity = 104/190 (54.74%), Postives = 136/190 (71.58%), Query Frame = 1
Query: 40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAE 606
RG GYGLDAELA++ +YD+ ED+AR W+E +TG + FG+ LRDGV +C+LVN I PG V+++ +S+MPFK MEN+S FL++CRAMGV E LFETVDLFE KD+GLVVRCI ALG A Q P++ GPTLG K +N+R F+E+Q +AR SF + GS +MER+ RK+ + FGAE
Sbjct: 8 RGGGYGLDAELAKRAAERYDYDLEDEARYWVEEITGMEIGDDFGEGLRDGVILCELVNKIHPGVVKRVETKSKMPFKLMENVSGFLRACRAMGVNEFELFETVDLFELKDLGLVVRCIHALGRATQKNYPDFKGPTLGVKESSKNERQFSEEQLAEARNAPSF--IAQGSVRTMERADVRKANDLTFGAE 195
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS5_GLOUD) HSP 1 Score: 203 bits (516), Expect = 4.030e-57 Identity = 106/194 (54.64%), Postives = 136/194 (70.10%), Query Frame = 1
Query: 40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGS 618
RG GYGLDAELAR+ +YD+ ED+AR WIEAV+G + FG+ LRDGV +C LVN I P V++I +S+MPFK MEN+S+FL++CR MGV+E LFETVDLFE KD+G VVRCIFALG AVQ T P++ GPTLG K +N+R F E++ +AR S + +GS +MER + + FGAE A S
Sbjct: 9 RGGGYGLDAELARRAAERYDYEMEDEARAWIEAVSGMAIGDEFGEGLRDGVILCTLVNKIHPDIVKRIETKSKMPFKLMENVSSFLRACRTMGVSEFDLFETVDLFELKDLGHVVRCIFALGRAVQKTYPDFNGPTLGVKESVKNERTFTEEKLNEARAAPSL--VNLGSFRTMERLDVSRGNSVTFGAEAATS 200
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYZ9_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.780e-52 Identity = 99/191 (51.83%), Postives = 131/191 (68.59%), Query Frame = 1
Query: 37 TRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAE 606
TRG GYGLDAELAR+ +YD+ ED+AR+WIEAV + + FG+ LRDGV +C LVN I PG V ++ +S+MPFK MEN+S FL++CR +GV E LFETVDLFE KD+G VVRCIFALG AVQ P++ GP LG K +N+R F E++ +AR + + +GS +M R ++ + FGAE
Sbjct: 8 TRGGGYGLDAELARRAAERYDYEMEDEARDWIEAVAHKDIGEDFGEGLRDGVVLCALVNAIHPGIVPRVETKSKMPFKLMENVSAFLRACRKIGVNEFDLFETVDLFELKDLGHVVRCIFALGRAVQKNYPDFAGPALGVKEAVKNERTFTEEKLNEARNAPAL--VNLGSLRTMARLDIARTNSVTFGAE 196
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5N1_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.500e-51 Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = 1
Query: 40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGS 618
RG G+GLDAELAR+ +YD+ E++AR+WIEA++G + FG L+DGV +C + N I PG VR++ +S+MPFKQMEN+S FLK+CR MGV E LFETVDLFE KD+G VVRCIFALG +VQ + P++ GPTLG K +N+R F Q AR + LG S +M+R S + GA+ A S
Sbjct: 56 RGGGFGLDAELARKAAERYDYGMENEARQWIEAISGMEIGDDFGTGLKDGVILCSVANKIHPGIVRRVETKSKMPFKQMENVSGFLKACRVMGVNEFDLFETVDLFELKDLGNVVRCIFALGRSVQRSYPDFNGPTLGVKESSKNQRTFTPDQLADARNAPALQSLG--SFRTMKRQNTFHSNNVTLGADAAQS 247
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVG1_9STRA) HSP 1 Score: 183 bits (465), Expect = 8.340e-50 Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 1
Query: 40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSG 621
RG GYGLDAELAR+ +YD+ ED+AR W+E ++G + FG LRDGV +C + N I P VR++ +S+MPFK MEN+S FLK+CR MGV E LFETVDLFE KD+G VVRCIFALG AVQ + PE+ GPTLG K +N+R F Q AR + LG S +M+R + + GA+ A SG
Sbjct: 10 RGGGYGLDAELARRAAERYDYDMEDEARAWLENLSGMEIGPDFGPGLRDGVILCSVANKIHPDVVRRVETKSKMPFKLMENVSAFLKACRVMGVNEFDLFETVDLFELKDLGNVVRCIFALGRAVQRSYPEFKGPTLGVKESIKNQRAFTPDQLADARNAPALQTLG--SFRTMKRQTTFHTNNVMLGADAAQSG 202 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9.17090.1 >prot_E_fasciculatus_S2_contig9.17090.1 ID=prot_E_fasciculatus_S2_contig9.17090.1|Name=mRNA_E_fasciculatus_S2_contig9.17090.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=331bp MAAFGTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGback to top mRNA from alignment at E_fasciculatus_S2_contig9:31810..35885- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9.17090.1 ID=mRNA_E_fasciculatus_S2_contig9.17090.1|Name=mRNA_E_fasciculatus_S2_contig9.17090.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4076bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9:31810..35885- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9:31810..35885- >mRNA_E_fasciculatus_S2_contig9.17090.1 ID=mRNA_E_fasciculatus_S2_contig9.17090.1|Name=mRNA_E_fasciculatus_S2_contig9.17090.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=993bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9:31810..35885- (Ectocarpus fasciculatus EfasUO2)back to top |