mRNA_E_fasciculatus_S2_contig9.17090.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9.17090.1
Unique NamemRNA_E_fasciculatus_S2_contig9.17090.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Calponin-homology ((CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 7.750e-176
Identity = 280/330 (84.85%), Postives = 288/330 (87.27%), Query Frame = 1
Query:   22 MAAFGTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSGDTTTVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSGLGSYGIMDRNSVSNANDITFGASASQATPLDGNKDKDADAGVPVPEKATADCPVSAAMSPLVFGGDAVENNNRSWFQARSG 1011
            MAAFG RGAGYGLDAELARQREAKYDHSAEDQAR WIEAVTGERVVGPFGDALRDGV ICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDL+EGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKR+FNE+QKQQA+VNASFSKLGMGSAHSMERSQ  K   ICFGAENAG+GDTTTVG                      XXXXXXXXXXXXXXXXX Q  L SYGIMDRNS SNAND+TFGA +SQA PLDGNK+KDADAGV VPEK TADCPVSAAMSPLVFG D VE NNRSWFQARSG
Sbjct:    1 MAAFGARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNEEQKQQAKVNASFSKLGMGSAHSMERSQISKPG-ICFGAENAGTGDTTTVGKLTKGSHGIQERLPVDQSRSITXXXXXXXXXXXXXXXXXXQPSLSSYGIMDRNSFSNANDVTFGAPSSQARPLDGNKEKDADAGVSVPEKPTADCPVSAAMSPLVFGCDTVEKNNRSWFQARSG 329          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Calponin (homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 236 bits (602), Expect = 3.810e-73
Identity = 119/199 (59.80%), Postives = 150/199 (75.38%), Query Frame = 1
Query:   40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSGDTTTV 636
            RG GYGLDAELA +  AKYD   E  A+EW+EAVTG +  G F  +L+DG  +C+L+N IKPG +++IN S+MPFKQMENISNFLK+CR +GVAE+SLFETVDLFE KD+GLV+RC+FALGSAVQ + PE+ GP LGAKPH  NKR F  +Q +QAR++ + +K   GSA  MER    K+  I  GAE AG GDT+++
Sbjct:    4 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTG-ITAGAEYAGIGDTSSM 201          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Calponin (homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.810e-69
Identity = 116/201 (57.71%), Postives = 144/201 (71.64%), Query Frame = 1
Query:   34 GTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSGDTTTV 636
            G RG GYGLDAELAR+  A YD++ E  A+EWIEAVT  +  G F  AL+DG  +CKL+N I+PG V+KIN S MPFKQMENIS +LK CRA+GVAEHSLFETVDL+E KDI LV++C+FALGS +Q + PE+ GP LGAK H  NKR F  +Q  +AR+  + +K   GSA  MER    K   I  GAE AG+GD+ ++
Sbjct:    3 GARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQSSVPEFHGPHLGAKMHTANKREFTAEQMAKARLGGAITKQTQGSAAVMERLHVTKGG-ITMGAEYAGTGDSGSI 202          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 4.380e-68
Identity = 121/199 (60.80%), Postives = 148/199 (74.37%), Query Frame = 1
Query:   34 GTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNAS--FSKLGMGSAHSMERSQARKSMCICFGAENAGSGD 624
            G RG GYGLDAELA +REA YD      A+EWIE VTGER    FG+ L+DG  +C L+N IKPGAVR++N+SRMPFKQMEN+SNFLK+CRA+GVAEHSLFETVDL+EGKD+GLVVRC+ ALG  VQ +CPEY GP LG K  + NKR + E+Q+QQ   N+S   S L  GS+ +MER+   K+    FGA  +G+GD
Sbjct:  340 GGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCLHALGQTVQNSCPEYNGPRLGIKQTEANKREWTEEQQQQQLRNSSGAMSNLLAGSSKTMERATILKTGAT-FGAAQSGTGD 537          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN)

HSP 1 Score: 201 bits (510), Expect = 7.980e-58
Identity = 103/190 (54.21%), Postives = 133/190 (70.00%), Query Frame = 1
Query:   40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAE 606
            RG GYGLDAELA++   KYD+  ED+AR+WIEA+TG  +   FG+ LRDGV +C+L N I PG +R+I  +S+MPFK MEN+S FLK+CR +GV E+ LFETVDLFE K +GLVVRC+ ALG AVQ   P + GPTLG K   +N+R F E+Q  QAR   S   L +GS  +MER    ++  + FGA+
Sbjct:    9 RGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCLHALGRAVQKNYPSFNGPTLGVKEAAKNERQFTEEQIAQARNAPSL--LSLGSMRTMERLDVSRANDVTFGAD 196          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMC3_PYTOL)

HSP 1 Score: 206 bits (524), Expect = 3.750e-57
Identity = 104/190 (54.74%), Postives = 136/190 (71.58%), Query Frame = 1
Query:   40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAE 606
            RG GYGLDAELA++   +YD+  ED+AR W+E +TG  +   FG+ LRDGV +C+LVN I PG V+++  +S+MPFK MEN+S FL++CRAMGV E  LFETVDLFE KD+GLVVRCI ALG A Q   P++ GPTLG K   +N+R F+E+Q  +AR   SF  +  GS  +MER+  RK+  + FGAE
Sbjct:    8 RGGGYGLDAELAKRAAERYDYDLEDEARYWVEEITGMEIGDDFGEGLRDGVILCELVNKIHPGVVKRVETKSKMPFKLMENVSGFLRACRAMGVNEFELFETVDLFELKDLGLVVRCIHALGRATQKNYPDFKGPTLGVKESSKNERQFSEEQLAEARNAPSF--IAQGSVRTMERADVRKANDLTFGAE 195          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS5_GLOUD)

HSP 1 Score: 203 bits (516), Expect = 4.030e-57
Identity = 106/194 (54.64%), Postives = 136/194 (70.10%), Query Frame = 1
Query:   40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGS 618
            RG GYGLDAELAR+   +YD+  ED+AR WIEAV+G  +   FG+ LRDGV +C LVN I P  V++I  +S+MPFK MEN+S+FL++CR MGV+E  LFETVDLFE KD+G VVRCIFALG AVQ T P++ GPTLG K   +N+R F E++  +AR   S   + +GS  +MER    +   + FGAE A S
Sbjct:    9 RGGGYGLDAELARRAAERYDYEMEDEARAWIEAVSGMAIGDEFGEGLRDGVILCTLVNKIHPDIVKRIETKSKMPFKLMENVSSFLRACRTMGVSEFDLFETVDLFELKDLGHVVRCIFALGRAVQKTYPDFNGPTLGVKESVKNERTFTEEKLNEARAAPSL--VNLGSFRTMERLDVSRGNSVTFGAEAATS 200          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYZ9_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.780e-52
Identity = 99/191 (51.83%), Postives = 131/191 (68.59%), Query Frame = 1
Query:   37 TRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAE 606
            TRG GYGLDAELAR+   +YD+  ED+AR+WIEAV  + +   FG+ LRDGV +C LVN I PG V ++  +S+MPFK MEN+S FL++CR +GV E  LFETVDLFE KD+G VVRCIFALG AVQ   P++ GP LG K   +N+R F E++  +AR   +   + +GS  +M R    ++  + FGAE
Sbjct:    8 TRGGGYGLDAELARRAAERYDYEMEDEARDWIEAVAHKDIGEDFGEGLRDGVVLCALVNAIHPGIVPRVETKSKMPFKLMENVSAFLRACRKIGVNEFDLFETVDLFELKDLGHVVRCIFALGRAVQKNYPDFAGPALGVKEAVKNERTFTEEKLNEARNAPAL--VNLGSLRTMARLDIARTNSVTFGAE 196          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5N1_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.500e-51
Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = 1
Query:   40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGS 618
            RG G+GLDAELAR+   +YD+  E++AR+WIEA++G  +   FG  L+DGV +C + N I PG VR++  +S+MPFKQMEN+S FLK+CR MGV E  LFETVDLFE KD+G VVRCIFALG +VQ + P++ GPTLG K   +N+R F   Q   AR   +   LG  S  +M+R     S  +  GA+ A S
Sbjct:   56 RGGGFGLDAELARKAAERYDYGMENEARQWIEAISGMEIGDDFGTGLKDGVILCSVANKIHPGIVRRVETKSKMPFKQMENVSGFLKACRVMGVNEFDLFETVDLFELKDLGNVVRCIFALGRSVQRSYPDFNGPTLGVKESSKNQRTFTPDQLADARNAPALQSLG--SFRTMKRQNTFHSNNVTLGADAAQS 247          
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVG1_9STRA)

HSP 1 Score: 183 bits (465), Expect = 8.340e-50
Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 1
Query:   40 RGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFGDALRDGVFICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSG 621
            RG GYGLDAELAR+   +YD+  ED+AR W+E ++G  +   FG  LRDGV +C + N I P  VR++  +S+MPFK MEN+S FLK+CR MGV E  LFETVDLFE KD+G VVRCIFALG AVQ + PE+ GPTLG K   +N+R F   Q   AR   +   LG  S  +M+R     +  +  GA+ A SG
Sbjct:   10 RGGGYGLDAELARRAAERYDYDMEDEARAWLENLSGMEIGPDFGPGLRDGVILCSVANKIHPDVVRRVETKSKMPFKLMENVSAFLKACRVMGVNEFDLFETVDLFELKDLGNVVRCIFALGRAVQRSYPEFKGPTLGVKESIKNQRAFTPDQLADARNAPALQTLG--SFRTMKRQTTFHTNNVMLGADAAQSG 202          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9.17090.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Calponin-homology7.750e-17684.85(CH) domain-containing protein n=1 Tax=Ectocarpus ... [more]
Calponin3.810e-7359.80homology domain-containing protein n=1 Tax=Tribone... [more]
Calponin1.810e-6957.71homology domain-containing protein n=1 Tax=Tribone... [more]
Uncharacterized4.380e-6860.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.980e-5854.21protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Uncharacterized3.750e-5754.74protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized4.030e-5754.64protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized1.780e-5251.83protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized1.500e-5151.03protein (Fragment) n=2 Tax=Nothophytophthora sp. C... [more]
Uncharacterized8.340e-5051.28protein n=3 Tax=Phytophthora kernoviae TaxID=32545... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9contigE_fasciculatus_S2_contig9:31810..35885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score503.4
Seed ortholog evalue7.8e-140
Seed eggNOG ortholog2880.D7FJ16
Preferred nameSCP1
Model size1014
KEGG koko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0048869,GO:0051015,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Exons9
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
Ec32 ortholog descriptionCalponin homology domain
Ec32 orthologEc-07_004790.1
Cds size993
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9.17090.1prot_E_fasciculatus_S2_contig9.17090.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9 31810..35864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842552.878791-CDS-E_fasciculatus_S2_contig9:31809..319531696842552.878791-CDS-E_fasciculatus_S2_contig9:31809..31953Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 31810..31953 -
1696842552.9009485-CDS-E_fasciculatus_S2_contig9:32178..322861696842552.9009485-CDS-E_fasciculatus_S2_contig9:32178..32286Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 32179..32286 -
1696842552.9105527-CDS-E_fasciculatus_S2_contig9:33146..332571696842552.9105527-CDS-E_fasciculatus_S2_contig9:33146..33257Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 33147..33257 -
1696842552.9211352-CDS-E_fasciculatus_S2_contig9:33443..335081696842552.9211352-CDS-E_fasciculatus_S2_contig9:33443..33508Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 33444..33508 -
1696842552.9299936-CDS-E_fasciculatus_S2_contig9:33651..337721696842552.9299936-CDS-E_fasciculatus_S2_contig9:33651..33772Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 33652..33772 -
1696842552.939088-CDS-E_fasciculatus_S2_contig9:33984..341101696842552.939088-CDS-E_fasciculatus_S2_contig9:33984..34110Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 33985..34110 -
1696842552.9540098-CDS-E_fasciculatus_S2_contig9:34351..344861696842552.9540098-CDS-E_fasciculatus_S2_contig9:34351..34486Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 34352..34486 -
1696842552.966346-CDS-E_fasciculatus_S2_contig9:34680..347611696842552.966346-CDS-E_fasciculatus_S2_contig9:34680..34761Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 34681..34761 -
1696842552.9773881-CDS-E_fasciculatus_S2_contig9:35762..358641696842552.9773881-CDS-E_fasciculatus_S2_contig9:35762..35864Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9 35763..35864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842552.9953432-UTR-E_fasciculatus_S2_contig9:35864..358851696842552.9953432-UTR-E_fasciculatus_S2_contig9:35864..35885Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9 35865..35885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9.17090.1

>prot_E_fasciculatus_S2_contig9.17090.1 ID=prot_E_fasciculatus_S2_contig9.17090.1|Name=mRNA_E_fasciculatus_S2_contig9.17090.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=331bp
MAAFGTRGAGYGLDAELARQREAKYDHSAEDQAREWIEAVTGERVVGPFG
DALRDGVFICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVA
EHSLFETVDLFEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQEN
KRVFNEQQKQQARVNASFSKLGMGSAHSMERSQARKSMCICFGAENAGSG
DTTTVGKLAKGSHGIQERLPVDQSRSITFGKDQVGTGDTTTIGKLTQSGL
GSYGIMDRNSVSNANDITFGASASQATPLDGNKDKDADAGVPVPEKATAD
CPVSAAMSPLVFGGDAVENNNRSWFQARSG*
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mRNA from alignment at E_fasciculatus_S2_contig9:31810..35885-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9.17090.1 ID=mRNA_E_fasciculatus_S2_contig9.17090.1|Name=mRNA_E_fasciculatus_S2_contig9.17090.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4076bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9:31810..35885- (Ectocarpus fasciculatus EfasUO2)
CTCACTTACTCACACACACAGATGGCGGCCTTCGGAACTCGCGGAGCTGG GTATGGACTGGACGCAGAGCTTGCTCGTCAGAGAGAGGCGAAATATGACC ATTCTGCGGAAGACCAAGCGAGGGTACGTGCTGCACGGGGGACTACTCTG TGCACTGCTGTATACATTGCTGTCGACGGTAACATGTAGACTACATGGAA CTGCGTCTGTCTGTGTTGTGGTCCTGCTTGCTGCGTTGAGCCCATCAGAG TCGACCCGGCATGATATATAGATACAGGCCCATGACGACGCGCACAAGAA GCGTGTGGTTGTGTGGTTGTCCTGACAAGTTCTGAACATCGAAGTGCGCG GTCTTTGGAGGTGGTGACTGCAACACCATGTTGCCAGACCGCGGAGACAT TCCCCTTTCTCCTACGTGTAGAAGAAGTAGAAGGTCGTATCAGCAGCTCT TCGCCCCAACTCTACCCTCGCTCCAGCTTACGATAGCGCAACGTTGAGGA TGTTGAAGGTGGTATGTGTCGAGGTGAAGCCCCATGGTCTTGGCACCTCA CGAAAAGAACTATTTCGTGGAGGCTAGATAAAGTAGATTACCACAAACGT TCAAACTGCTAGACTTTAACATGTTTTTGCTGACACACGGGGGTAGGGTC GTTCTCGATCGACCTTCGCCAACTGTAACAAGTCATTCATTCTTCTAGGG TTCCGGAGGGGTGCGTAGTCACCACGCGAAAAAATTACGTTATTTCACTC AACGACGAGGTCTGTATCCCGTCCGTACAACACGGGTGGCGATCGAAACC CGTCCGCGTCTCTTGTTGGTCGCTCCTCTGTAGTGGTGGGCGATGTGCCG GATTTCTTCTCAAACCTAGACTATGTACTGAAATGGTGATTTCGATGCAC TTTCACAGTGTCAAGAACAGCTGCTTTCGAAATCCTTCGGTGGAACGCGC TTTGGATCCAAGGGCTTGCGTGACACGTTGAGCGCCAACATACGCATACT TTGGGTCGGGTCGATATCTAAAATAGTCTATACTTCGAAATTTTTATATT GTTCTCGTCTCTCTCTACTGTTGCATTCTCTCTTTCTATCTGTTCCTCAC AATCGCGCACCCCCCGTCGTGCAGGAATGGATCGAAGCAGTGACAGGCGA GCGGGTTGTCGGCCCCTTCGGAGACGCCTTGAGAGATGGCGTTTTTATCT GCAAGGTGATCGAAAATCTGCAAGGTGATCGAACGAGCATGTATTTCTAC ATCGAGAATGCGGGGTTCTCAGCTAGCATTGCAATATTTTCCCTGTTTTT GTAGCGCTGAACGATCGGAACCTTTAATGCGAACCTCATGTTAAGCCTTC ACTCCTCCCGCGACCCTTTTCCCCAACCCTAATCCTAAAACCTCGATAGC TTGTCAACACTATCAAGCCAGGTGCGGTGCGGAAGATCAACGAGTCAAGG ATGCCCTTCAAGCAGATGGAAAACATCTCGAACTTTCTGAAATCCTGCAG GGCGATGGGAGTCGCCGAGCACTCGTTATTCGAGGTGCGGGAAACAATGC TTGTACTGTTGATTGCTGTAGATCTATGGAAGACAGGTTATACCGTAGAG ATGCGACGCAATCGTTTCATGTTCCGTATCTGCTAGACCTTCAGTTGTCA CCGTCGACGCTCTGTGATCCTGTAGGTCTGGAGAGAGAGGCAAGAGCGTG TGCCTTCTACACGTGACGTCGCAACTCATTACCTTTGCTCTGTACTTGCT GCATCGTCGCTCTGTCGCCGGAAAGACGGTGGATCTGTTCGAAGGAAAAG ACATCGGGCTGGTGGTGCGCTGCATTTTTGCCTTGGGAAGCGCCGTTCAG GGTACTTGCCCGGAGTACACCGGGCCGACCTTAGGAGCCAAGCCTCATCA GGTGAATGAAATAAGGTTGGAGCTACAGTACAGGGAGGTGGTAGACGGGC AGCTCCCGGTGCGAGCATGTTTTTTGCCTTTTCCGCCGCAGGATAGCAGT GCTGCTGCTTGCGGTGACAAAGGTGGTACGTGTGCATGTATGTCCGGCTT CATTCCTTGTCTGCCGTCCCCTACGACTTGTTTTTGACGTGGCTGTTGTG ATGCGCAACCCAGGAGAACAAGCGGGTTTTCAACGAGCAGCAGAAGCAAC AGGCCAGAGTCAACGCCTCGTTCTCCAAGCTCGGCATGGGTTCGGCCCAC AGCATGGAGCGTTCACAGGCAAGAAAATCAATGTGTCTTTCTTTGCACGG TAGATTTTCATCCGGCGACCCTCGAAACCTTCCTGCGTCGTCACCTCGAC TCTTTCGCTGCTGAAATTCCGCAAAATTCCCGGGTTTTCCCTCTGTGTGT GGAATTCTAAACAGATTTCTAAACCAGGCATTTGCTTTGGAGCCGAGAAC GCTGGCAGTGGCGACACCACCACAGTCGGCAAACTAGCAAAGGTGAAACG GGGAACCGTGAAATGGTGCCAAGTCATTGTCGCGTGGAGTTGTCAGGAAG AGATTTGCTGTTGGAACACACTTGATGTCCTTGCGTGTCATCAGAGCCGA AACACGAAAAATCTGAGGAAACAAGCTACTAGATGGAGCATGAGACATTC ATGTTTGTTTCTCCTCGCAACACCCCAGGGCTCACATGGCATTCAAGAGC GCCTTCCGGTGGATCAATCCAGGAGCATTACGTTTGGCAAAGACCAGGTC GGAACGGGCGACACCACGACAATCGGCAAACTCACTCAGGTTTGTCATTG TGGGCTTGCGGAGAGGGTGGGCGTTGAGGGTTTATTTCATACCTCGAAAC CTCCGCATCGTCTCACATCGGTATTGATACTGATTCATGGTGAATGAAAG AAGCCCGACCCAATGTCTGTAAGGAGGCTCGCGACGTAAGTTGTAGCTTC CCCGTTGAAGGCACCCCGCGACAACCGGTAAATCTTGATAAATTGCTACC ATCCACCAATTCTGGTAGAGGAGGCAACGTAGTCTAAGCCATACTGCAGT ATAGACTATAGTCTAGACTTCCTAAGAACGTTCACTCAATACGCACGGTA GCTTTTGTCGAGGGCAACCAAAAACAACTAGATCATGAATACGCCTACAA GGCACCATTGCGGTTTACGAAGAGACCTGTATTAAAACGCCCCCTTATCC TCGTAACACCAAAGGGCTCGTGTGGCATTCAAGAACGCCTTCCAGTGAAC CAATCCAGGAGCATTACATTTGGCAACGACAAGCTGGGCACCGGCGACAC AAAGGTCATGACAAAGGCAAGGTTTTTCACTTGTGAGCCGTTTTTACGGG GTCTGACGAGTTAGTAGCAGGGTGAGAGTTGAATGTGGCCTACTACTTGT AGTCATCCATACGACAACCGCGTATTTGGCGACAGAACGTGTGCGTCACC ATGTATTCAATACTAACGCGAATATCAATATTGTATAACGTCCTTCGAGC CTCTCTGTGGTACAGTATACAGTAGGTCGTGTGCCTTCTGTTCGACAGAG CATACCCGTGCTTCAATGAAGAATGCTACATAGTGCTAGGTCTTGCGGAC GAAAAGTAACGAAGCAAACAAACCCCACTGCTATCACATGTTTTCACAGT CTGGCTTGGGCTCATACGGAATCATGGACCGCAACTCTGTTTCCAACGCC AACGACATCACTTTCGGGGCCTCGGCCAGTCAGGCGACGCCGCTGGACGG AAACAAGGTATGCACGAGATAACATTAAGTAACTTCTTGCTCAACGCATG TCTTCCATCATTGTGTGTGTATAGTTCAAGAGCGAAGTTTTTTCCCTTGT TGGCTGCGCGCAGGAGTAATGGGGTTATAAAAATGCGATACCGATATTGA TTGCTGCCTCCACGAGGCAGCATGAACGATTGCTATGAGGCTTTTGAACT GAGAAAAAATGAAATGTCTCTCCTCTTCACAGGACAAGGATGCCGATGCC GGAGTCCCTGTGCCCGAGAAAGCTACAGCGGACTGCCCCGTCAGCGCGGC CATGTCGCCGTTGGTGTTCGGTGGCGACGCCGTTGAGAACAACAACAGGA GCTGGTTCCAGGCTCGGAGTGGGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9:31810..35885-

>mRNA_E_fasciculatus_S2_contig9.17090.1 ID=mRNA_E_fasciculatus_S2_contig9.17090.1|Name=mRNA_E_fasciculatus_S2_contig9.17090.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=993bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9:31810..35885- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGCCTTCGGAACTCGCGGAGCTGGGTATGGACTGGACGCAGAGCT
TGCTCGTCAGAGAGAGGCGAAATATGACCATTCTGCGGAAGACCAAGCGA
GGGAATGGATCGAAGCAGTGACAGGCGAGCGGGTTGTCGGCCCCTTCGGA
GACGCCTTGAGAGATGGCGTTTTTATCTGCAAGCTTGTCAACACTATCAA
GCCAGGTGCGGTGCGGAAGATCAACGAGTCAAGGATGCCCTTCAAGCAGA
TGGAAAACATCTCGAACTTTCTGAAATCCTGCAGGGCGATGGGAGTCGCC
GAGCACTCGTTATTCGAGACGGTGGATCTGTTCGAAGGAAAAGACATCGG
GCTGGTGGTGCGCTGCATTTTTGCCTTGGGAAGCGCCGTTCAGGGTACTT
GCCCGGAGTACACCGGGCCGACCTTAGGAGCCAAGCCTCATCAGGAGAAC
AAGCGGGTTTTCAACGAGCAGCAGAAGCAACAGGCCAGAGTCAACGCCTC
GTTCTCCAAGCTCGGCATGGGTTCGGCCCACAGCATGGAGCGTTCACAGG
CAAGAAAATCAATGTGCATTTGCTTTGGAGCCGAGAACGCTGGCAGTGGC
GACACCACCACAGTCGGCAAACTAGCAAAGGGCTCACATGGCATTCAAGA
GCGCCTTCCGGTGGATCAATCCAGGAGCATTACGTTTGGCAAAGACCAGG
TCGGAACGGGCGACACCACGACAATCGGCAAACTCACTCAGTCTGGCTTG
GGCTCATACGGAATCATGGACCGCAACTCTGTTTCCAACGCCAACGACAT
CACTTTCGGGGCCTCGGCCAGTCAGGCGACGCCGCTGGACGGAAACAAGG
ACAAGGATGCCGATGCCGGAGTCCCTGTGCCCGAGAAAGCTACAGCGGAC
TGCCCCGTCAGCGCGGCCATGTCGCCGTTGGTGTTCGGTGGCGACGCCGT
TGAGAACAACAACAGGAGCTGGTTCCAGGCTCGGAGTGGGTAA
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