mRNA_E_fasciculatus_S2_contig8998.17085.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8998.17085.1
Unique NamemRNA_E_fasciculatus_S2_contig8998.17085.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8998.17085.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWY2_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 7.030e-84
Identity = 165/226 (73.01%), Postives = 182/226 (80.53%), Query Frame = 1 
Query:    1 LVESGDNLSRVRKEVVGKTKRFSEPQESRAITKAVGSPGHREFPGKSALSRVGTADGPAKEEGAENEKKSTLPNPERELAAERQSGHAPSRENRRSGG---VCGADSLGGGDGGGDNDEIFPVGVVETLRERAAAASLAAEVARKDGDRARVELEAFKDRVAAVEELLSKSKAAEVDSASRASEVERTCSRLRMQLQARERQIAELREISQGNLARARHRRKQCAW 669
            LVESGDNLSRVRKE+VGKT R + PQESRAITK  G PGHRE P    ++ + T DGPAKE GAENE+ S L N ERELA E +SG+ P RE RRS     V GAD L  GDGGG N+E F V VV+ LRERA AASLAAEVARK+GDRARVELEA K+RVA+VEELLSKSKAAEVDSASR SE E+TC+RLRMQL ARERQIAELREISQGNL RA+HRRKQC+W
Sbjct:  382 LVESGDNLSRVRKEIVGKTTRLAWPQESRAITKGTGYPGHREIPEMGVMTSLETVDGPAKEAGAENEEMSALSNAERELAVETESGNVPKREGRRSSDRRDVGGADGLRDGDGGG-NEEGFAVRVVQMLRERATAASLAAEVARKEGDRARVELEALKERVASVEELLSKSKAAEVDSASRVSEAEQTCARLRMQLLARERQIAELREISQGNLDRAKHRRKQCSW 606
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BLAST of mRNA_E_fasciculatus_S2_contig8998.17085.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ7_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 3.720e-83
Identity = 165/226 (73.01%), Postives = 182/226 (80.53%), Query Frame = 1 
Query:    1 LVESGDNLSRVRKEVVGKTKRFSEPQESRAITKAVGSPGHREFPGKSALSRVGTADGPAKEEGAENEKKSTLPNPERELAAERQSGHAPSRENRRSGG---VCGADSLGGGDGGGDNDEIFPVGVVETLRERAAAASLAAEVARKDGDRARVELEAFKDRVAAVEELLSKSKAAEVDSASRASEVERTCSRLRMQLQARERQIAELREISQGNLARARHRRKQCAW 669
            LVESG+NLSRVRKE+VGKTKR  +PQESRAITK  G PGHRE   KS LS +GT + PAKE   ENEK   L N ERELA E QSG+AP+RE RRSGG   V GAD LG     G NDE F VG VE LRERAAAASLAAEVARKDGDRARVELEAFK+RVA+VEELLSKSKA   DSAS+ SE E+TC+RLRMQLQARERQIA+L+E+S+GNL RA+HRRKQCAW
Sbjct:  425 LVESGNNLSRVRKEIVGKTKRLGKPQESRAITKDTGYPGHREILEKSVLSSLGTVEAPAKEAVEENEKMRALSNAERELAVETQSGNAPTREGRRSGGCGGVLGADGLGXXXXXG-NDEGFAVGAVEILRERAAAASLAAEVARKDGDRARVELEAFKERVASVEELLSKSKATAADSASKVSEAEQTCARLRMQLQARERQIAQLQELSRGNLNRAKHRRKQCAW 649
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8998.17085.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.030e-8473.01protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.720e-8373.01protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8998contigE_fasciculatus_S2_contig8998:3171..6170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size674
Hectar predicted targeting categoryother localisation
Exons5
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842551.990822-CDS-E_fasciculatus_S2_contig8998:3170..32561696842551.990822-CDS-E_fasciculatus_S2_contig8998:3170..3256Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8998 3171..3256 +
1696842552.0053728-CDS-E_fasciculatus_S2_contig8998:3715..38331696842552.0053728-CDS-E_fasciculatus_S2_contig8998:3715..3833Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8998 3716..3833 +
1696842552.021493-CDS-E_fasciculatus_S2_contig8998:4124..44171696842552.021493-CDS-E_fasciculatus_S2_contig8998:4124..4417Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8998 4125..4417 +
1696842552.0336037-CDS-E_fasciculatus_S2_contig8998:5325..54251696842552.0336037-CDS-E_fasciculatus_S2_contig8998:5325..5425Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8998 5326..5425 +
1696842552.0501425-CDS-E_fasciculatus_S2_contig8998:6095..61701696842552.0501425-CDS-E_fasciculatus_S2_contig8998:6095..6170Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8998 6096..6170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8998.17085.1prot_E_fasciculatus_S2_contig8998.17085.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8998 3171..6170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8998.17085.1

>prot_E_fasciculatus_S2_contig8998.17085.1 ID=prot_E_fasciculatus_S2_contig8998.17085.1|Name=mRNA_E_fasciculatus_S2_contig8998.17085.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=224bp
LVESGDNLSRVRKEVVGKTKRFSEPQESRAITKAVGSPGHREFPGKSALS
RVGTADGPAKEEGAENEKKSTLPNPERELAAERQSGHAPSRENRRSGGVC
GADSLGGGDGGGDNDEIFPVGVVETLRERAAAASLAAEVARKDGDRARVE
LEAFKDRVAAVEELLSKSKAAEVDSASRASEVERTCSRLRMQLQARERQI
AELREISQGNLARARHRRKQCAW*
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mRNA from alignment at E_fasciculatus_S2_contig8998:3171..6170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8998.17085.1 ID=mRNA_E_fasciculatus_S2_contig8998.17085.1|Name=mRNA_E_fasciculatus_S2_contig8998.17085.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3000bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8998:3171..6170+ (Ectocarpus fasciculatus EfasUO2)
CTGGTCGAGTCCGGGGACAACCTCTCCCGCGTGAGGAAAGAGGTCGTCGG
CAAGACGAAACGTTTCAGCGAGCCCCAGGAGTCGAGGCAAGAAAACAACC
GCCCTCTTTGTGCCTCGCCAGTTGACACAACGCATGTCAACCTCGGTTGT
GTGGGTTTTCGACGCCTTTTGTATAAATGAACTCCCTCGATGATGCCGCC
GCCTGCAATACTCGTTGTATGTATGTAGATCTATCTCAGATCTCGGCCAC
CTCGAACGACAGGTGCCCCCACCCCCGCGCTCTCCTACTTTCATCGCGTT
GCAACCGGTTTGCTCCGGACCTCCGGAAAGTATGATTGTGCTTGAGCATG
CCCTGTCCTGTCAAGACAGAATACCCCACAGGCACAGCACTGAAAACAGT
TTTTTTTGTTAGAGAACGAGTACAGAGCGTTTTCTTCGAGCTCGGGGTCT
TTGGAGTCTGTTTCATCGCCGAAGGGTCCACGCCAACTTGATTCCACTAC
ACCATGTTTTGGGGGGTCTTTCCACGCGTGATCGCGTTTTGTCAGGGCGA
TCACCAAAGCTGTAGGTTCTCCTGGCCATCGGGAATTCCCGGGAAAAAGT
GCTCTGAGCAGGGTGGGGACTGCTGATGGCCCGGCGAAGGAGGAGGGTGC
CGAAAACGAAAAGGTAGGAAAGGCAATGATTGATGCCGTCAAGAAGGGCC
CCGGGTCGAGGATGAAGGTCGCAATTTGGCCATGAACGTTGTGTTGGTAT
AGGTCGATCGATAGGTCGCGGCCCGCTTCGAGAATCCATGTTCGGCATCG
GTGGGAAAACAGGTGCTTCTGAAGCTACGCTTGACAAACGTGCGTCGCGC
CACTTAAAGCACGCGTGACCACAGATAGGGCTAAAAGCCAACCAAAAAAT
CCCCCCAAACCCCCTCGAACCCTTGTGCCCCTCTGTCTTCCCGCGACCAC
TCAGAAGAGTACATTGCCCAACCCCGAGCGAGAGCTCGCCGCTGAAAGGC
AGTCTGGACACGCACCTTCACGCGAGAATCGTCGGAGTGGTGGCGTTTGT
GGTGCTGACAGTCTTGGTGGTGGTGATGGTGGCGGCGATAACGACGAGAT
TTTCCCAGTAGGGGTGGTAGAGACCTTGAGGGAGAGAGCCGCGGCGGCGT
CCCTGGCGGCCGAGGTGGCCAGGAAGGACGGGGACAGGGCCAGGGTCGAG
CTCGAAGCCTTCAAGGACAGGGTGGCGGCGGTCGAGGAGCTTTTGAGGTT
CGAGTTCTACGTACTGTCTCGTCGATTGGATCATCGTGGTTGCCTGCTTT
GTTCTACTGCACTACTTTTCTTGGTTGCCAAACAGAGAAAAATGAAAAAA
TATAATACACCTATCCATATTGCGATAAAATATAATTTAGTGAACAATTT
ATTCTTCCAACCGTAGACCCCGAGAAAAACATTGATTGCCGCAGTGTTTG
GATAGGTCGGTTCCGCTGCTTTCTCATCTTGGCTCGCTTGCAGGCAATTC
GGAATAGATTGAGGAAACGTTCTGGCTTTTGCCATGTGTTGTTTTTGTTG
CCCGGAGGGCGTTTGTTCGACCTCTCTTGCATGTGTTGTTGTTTTTGCCC
CGGGGGCCGTTTGTTCGACCTCTCGCCAAATCTACGTGCTTTCTCTCTCT
CCTGCGCCCGGTAGGACGTACCCGGTGGTAACAGGGTTGGCGGCAGAGCG
AGGTCGATGATGCGGACTGTTTTCGGCGTGCGTGGGGTGGTTGAGTTGTA
GAGAAAAAAATTGATGCATGGAGCTTGTGCTTTCGCTGAACTGACGGTCT
TCGTCAGGGTTTCACTACGACTGACGTTCATACGATGGCCCTTTTTCGTC
ATGTGTGGAGTTCGGTATATGGTCTGCAAGCAGTTGTTCCAACGAGGCGC
GCGACCCTATCGGTATTTTTCACCTGCGTGGTGAAACCTCTAGATTCAGA
GGGAGATTTTTCCCGAACCCATCGCCGTTCATAGTCCGCCGCGTGCGTGT
GTGCGCTCTTGAGCGAAGTAAGTGCAAGTTTTCTGGCGGCGTCGCCCTAT
TCCAGCTCCGGAGCAGTACCGGTCGTCCATGCCCGAAACAACACTACCCG
CACCACAGAAACTTCCGTGCTTCTCCTCCGCCGCGACGTGTCCGGTCGCC
CACAGCAAGTCCAAGGCGGCCGAGGTCGACTCTGCGTCGAGGGCGTCCGA
GGTGGAGCGGACTTGTTCCCGTCTCAGGATGCAGCTGCAAGCGCGCGAGC
GACAGGTATGCACGCACCGCTGCCCATGATCCCGTATTAGGGCTACTGCG
TGGCCAAGAGGCGGCGGGGTTGCCGTTCTTTCCTCGCCTGATTGCTCACC
AGCCCCGTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGCTGTTGTTGTTGTTGTTGTCTTCAACTTCACACCCCTGGACGGAGA
CAAAAGGCGGGATACTGTCGTAGACTGAAACAAACTGACGTTGTATAGGA
TACAGTCCAGGAGGGAGAATTCACCAAGATCGAACTCGAGACCGTGCAAT
CAGATCAAGGCCATTTTATTTTTTCCTACACGAGAACGAGCCCCCCCGGC
GGAGATAGACGAGACGAGAAAAAGGGTAAATGCAAACTGTTTGTACAGGC
CTCGCCATGTCGACGTTCCATCTGTCTCTGTCCCTGCCGCCCTCTTCCTG
GTCCCCGGTACAAGTAGCTACTTTGCTCCGTTTAGCGCTGTGATGCTCTC
CATCTTCCTCTTCTCCCACACCGCCACTGCATACGCAAATCACCCGAAGT
CACTCGCTTCCCTACACCGGCCCGTGTGTGCATGTGTGTGAATCGAATCC
ACTCTTCAACCTGTTGGCATGACGGCTGTCCGTCGAAACGTCACCTGCTA
CAATACCCACATTCTTCCGCCGAAGATCGCCGAGCTGCGAGAAATATCTC
AGGGGAACCTTGCCCGCGCCAGACACCGCCGGAAGCAGTGTGCCTGGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8998:3171..6170+

>mRNA_E_fasciculatus_S2_contig8998.17085.1 ID=mRNA_E_fasciculatus_S2_contig8998.17085.1|Name=mRNA_E_fasciculatus_S2_contig8998.17085.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=672bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8998:3171..6170+ (Ectocarpus fasciculatus EfasUO2)
CTGGTCGAGTCCGGGGACAACCTCTCCCGCGTGAGGAAAGAGGTCGTCGG
CAAGACGAAACGTTTCAGCGAGCCCCAGGAGTCGAGGGCGATCACCAAAG
CTGTAGGTTCTCCTGGCCATCGGGAATTCCCGGGAAAAAGTGCTCTGAGC
AGGGTGGGGACTGCTGATGGCCCGGCGAAGGAGGAGGGTGCCGAAAACGA
AAAGAAGAGTACATTGCCCAACCCCGAGCGAGAGCTCGCCGCTGAAAGGC
AGTCTGGACACGCACCTTCACGCGAGAATCGTCGGAGTGGTGGCGTTTGT
GGTGCTGACAGTCTTGGTGGTGGTGATGGTGGCGGCGATAACGACGAGAT
TTTCCCAGTAGGGGTGGTAGAGACCTTGAGGGAGAGAGCCGCGGCGGCGT
CCCTGGCGGCCGAGGTGGCCAGGAAGGACGGGGACAGGGCCAGGGTCGAG
CTCGAAGCCTTCAAGGACAGGGTGGCGGCGGTCGAGGAGCTTTTGAGCAA
GTCCAAGGCGGCCGAGGTCGACTCTGCGTCGAGGGCGTCCGAGGTGGAGC
GGACTTGTTCCCGTCTCAGGATGCAGCTGCAAGCGCGCGAGCGACAGATC
GCCGAGCTGCGAGAAATATCTCAGGGGAACCTTGCCCGCGCCAGACACCG
CCGGAAGCAGTGTGCCTGGTAA
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