mRNA_E_fasciculatus_S2_contig8997.17084.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8997.17084.1
Unique NamemRNA_E_fasciculatus_S2_contig8997.17084.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8997.17084.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDD2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.620e-30
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 2 
Query:  134 MLSTWNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKGMLQRKLKPLGSYSE 310
            MLS WNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKG+LQRKLKPLGSYSE
Sbjct:    1 MLSKWNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKGILQRKLKPLGSYSE 59
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BLAST of mRNA_E_fasciculatus_S2_contig8997.17084.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ54_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.810e-29
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 2 
Query:  134 MLSTWNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKGMLQRKLKPLGSYS 307
            MLSTWNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKG+LQRKLKPLGSYS
Sbjct:    1 MLSTWNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKGILQRKLKPLGSYS 58
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8997.17084.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.620e-3096.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.810e-2998.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8997contigE_fasciculatus_S2_contig8997:3719..4951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size310
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842551.9344704-UTR-E_fasciculatus_S2_contig8997:3718..38511696842551.9344704-UTR-E_fasciculatus_S2_contig8997:3718..3851Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8997 3719..3851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842551.9446063-CDS-E_fasciculatus_S2_contig8997:3851..39481696842551.9446063-CDS-E_fasciculatus_S2_contig8997:3851..3948Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8997 3852..3948 +
1696842551.954803-CDS-E_fasciculatus_S2_contig8997:4871..49511696842551.954803-CDS-E_fasciculatus_S2_contig8997:4871..4951Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8997 4872..4951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8997.17084.1prot_E_fasciculatus_S2_contig8997.17084.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8997 3852..4951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8997.17084.1

>prot_E_fasciculatus_S2_contig8997.17084.1 ID=prot_E_fasciculatus_S2_contig8997.17084.1|Name=mRNA_E_fasciculatus_S2_contig8997.17084.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=59bp
MLSTWNAENINQVGPSQRGLGGGKSFKPLGDAGSSENPPSASGKGMLQRK
LKPLGSYSE
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mRNA from alignment at E_fasciculatus_S2_contig8997:3719..4951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8997.17084.1 ID=mRNA_E_fasciculatus_S2_contig8997.17084.1|Name=mRNA_E_fasciculatus_S2_contig8997.17084.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1233bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8997:3719..4951+ (Ectocarpus fasciculatus EfasUO2)
GGGACAGGGAGAGAGGTGTACTGATCAAGACAGTGGGTGGGATAGCAAAG
ACACTGGTGGAACATCCCTGCAGTTTGCTCCGCTGCCTTGGGTGCGCCGT
GCCTTGATCGACATCTGACCGACCTACAACATCATGTTGAGCACGTGGAA
TGCCGAGAACATCAACCAAGTCGGTCCTTCTCAGCGTGGGCTAGGAGGAG
GCAAGAGCTTCAAGCCTCTAGGCGATGCAGGTGCGGGGATAACACAGCTG
TAGTGTTCCTTATGTGCGAGTGCTGCTACCCAGGGGTCTGCGCCTACTGC
CAGCGTGTAGGGTAGAGAGCATAACAGAAATATCTGCGGCGCAACGTGTG
CAACATGGGCAGGCTCGTGAGCAAAGGTGCTGTGCTGTGCTGTGCTGTGC
GGTATGTAGCAATCCTGGGCCTCACCCACCTCTGTGGGCGTACAACGAGG
CAAAGAGGTGGAAGTGTTGATGTAATCGGTGTGTAGAGTAGACAGAAGTT
GCTGGGGCGCTGTGGAGCACTGACTGCTTTTACTTGCCAGGGTGCCATGC
CATGCCATGCCATGCCATGCCATGCAGCGGTTCAATACTGTAGTCTAGAC
TTTGTCTGCTGTTGCTGCCTGAGGCTGCCGTAAGAGGCACGGTGACCGTT
TTGAAAGCTCGATTACTCTCCAGTAAATTCAGGGATGGTGCCGGACAATA
CTGCTGTACCATCGTTGGATCCATGTCGTGTCGTGGGGCGCTTTTCGAAA
ATGTGCAATCTGTTTTTGCATCCTCTTCGTCCTGGGGAGCAATCCCGCTT
TCGGGTGGGGGGTGGTATCTTGAGCAACCCACGAGTGTTTCGCGATCATC
AAGCAGTGTGCACGAAGTTTTTCGTCCCAGTTGTTCTGGGTCCAGTCTTT
CGACCTTATTTTCTCATGTATCAGCCGGGGTCCAATACACACGACCTTTT
TTGTTTGTTTGTTTCTATTGTCCTAGCCTAATCCTCAGTACGGACAGAGG
AAGAAGGTACAGCAGTACTGGGCAGAGAAGTTTTTAATGTGAACACGGCA
ACAACAACAATTGTTTTATTTATTGCCCACCTCCCGTCCGGTGCCACTTG
CCACAAACCAACCTTGCCATCGAACGCAATTTATTTCATCGCCATGTCCA
CAGGATCATCAGAGAACCCTCCGTCAGCTTCAGGGAAAGGCATGCTTCAG
CGCAAGCTCAAGCCCCTGGGCAGCTACTCCGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8997:3719..4951+

>mRNA_E_fasciculatus_S2_contig8997.17084.1 ID=mRNA_E_fasciculatus_S2_contig8997.17084.1|Name=mRNA_E_fasciculatus_S2_contig8997.17084.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=177bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8997:3719..4951+ (Ectocarpus fasciculatus EfasUO2)
ATGTTGAGCACGTGGAATGCCGAGAACATCAACCAAGTCGGTCCTTCTCA
GCGTGGGCTAGGAGGAGGCAAGAGCTTCAAGCCTCTAGGCGATGCAGGAT
CATCAGAGAACCCTCCGTCAGCTTCAGGGAAAGGCATGCTTCAGCGCAAG
CTCAAGCCCCTGGGCAGCTACTCCGAA
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