mRNA_E_fasciculatus_S2_contig899.17078.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig899.17078.1
Unique NamemRNA_E_fasciculatus_S2_contig899.17078.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig899.17078.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 4.020e-60
Identity = 108/140 (77.14%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:    1 MPRLAVLISGCSVFLVLSWAMVAIRQANQPQFPSSAPTILPAAAEARKAADGVQQQYPAAKLKTRFQAPEGMDQGGRELDRNGKPKKKKTGGARGITVDRKNIVETVEMDDLRAPPGRLWIPAALAGPINHDSPDNPLFN 420
            MPRLAVLISGCSVFLVLSWAMVAIRQA++PQF SS+PT+LPAA   ++   GV ++  AAKLKTRF+ P+G D G RELDRNGKPKK+   G+RGI+VDRKNIVETVEMDDLRAPPGRLWIPAAL+GPINHDSPDN LFN
Sbjct:    1 MPRLAVLISGCSVFLVLSWAMVAIRQASRPQFHSSSPTVLPAAKAQKEGGVGVHKED-AAKLKTRFKTPDGKDLGDRELDRNGKPKKRM--GSRGISVDRKNIVETVEMDDLRAPPGRLWIPAALSGPINHDSPDNALFN 137
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig899.17078.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.020e-6077.14protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig899contigE_fasciculatus_S2_contig899:17536..17955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size421
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_009540.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842551.475002-CDS-E_fasciculatus_S2_contig899:17535..179551696842551.475002-CDS-E_fasciculatus_S2_contig899:17535..17955Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig899 17536..17955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig899.17078.1prot_E_fasciculatus_S2_contig899.17078.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig899 17536..17955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig899.17078.1

>prot_E_fasciculatus_S2_contig899.17078.1 ID=prot_E_fasciculatus_S2_contig899.17078.1|Name=mRNA_E_fasciculatus_S2_contig899.17078.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp
MPRLAVLISGCSVFLVLSWAMVAIRQANQPQFPSSAPTILPAAAEARKAA
DGVQQQYPAAKLKTRFQAPEGMDQGGRELDRNGKPKKKKTGGARGITVDR
KNIVETVEMDDLRAPPGRLWIPAALAGPINHDSPDNPLFN
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mRNA from alignment at E_fasciculatus_S2_contig899:17536..17955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig899.17078.1 ID=mRNA_E_fasciculatus_S2_contig899.17078.1|Name=mRNA_E_fasciculatus_S2_contig899.17078.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig899:17536..17955+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGCGTCTAGCCGTGCTCATCTCAGGATGCTCTGTGTTCCTGGTGTT
AAGCTGGGCAATGGTCGCGATTCGCCAGGCGAATCAGCCTCAGTTCCCTT
CCTCCGCGCCAACAATTTTGCCGGCAGCAGCGGAAGCGCGGAAAGCAGCA
GATGGTGTACAACAACAATATCCTGCAGCCAAGCTCAAAACTCGGTTCCA
GGCTCCTGAGGGGATGGACCAGGGCGGCCGTGAGCTCGATCGGAATGGGA
AGCCGAAGAAGAAGAAGACGGGGGGGGCGAGGGGCATCACCGTGGACAGA
AAGAACATCGTCGAGACGGTGGAGATGGACGACCTGAGAGCCCCGCCGGG
ACGCCTGTGGATCCCCGCTGCGCTCGCCGGCCCCATAAACCACGACTCGC
CCGACAACCCTCTCTTCAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig899:17536..17955+

>mRNA_E_fasciculatus_S2_contig899.17078.1 ID=mRNA_E_fasciculatus_S2_contig899.17078.1|Name=mRNA_E_fasciculatus_S2_contig899.17078.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig899:17536..17955+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGCGTCTAGCCGTGCTCATCTCAGGATGCTCTGTGTTCCTGGTGTT
AAGCTGGGCAATGGTCGCGATTCGCCAGGCGAATCAGCCTCAGTTCCCTT
CCTCCGCGCCAACAATTTTGCCGGCAGCAGCGGAAGCGCGGAAAGCAGCA
GATGGTGTACAACAACAATATCCTGCAGCCAAGCTCAAAACTCGGTTCCA
GGCTCCTGAGGGGATGGACCAGGGCGGCCGTGAGCTCGATCGGAATGGGA
AGCCGAAGAAGAAGAAGACGGGGGGGGCGAGGGGCATCACCGTGGACAGA
AAGAACATCGTCGAGACGGTGGAGATGGACGACCTGAGAGCCCCGCCGGG
ACGCCTGTGGATCCCCGCTGCGCTCGCCGGCCCCATAAACCACGACTCGC
CCGACAACCCTCTCTTCAAC
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