mRNA_E_fasciculatus_S2_contig8980.17073.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L317_9PHAE) HSP 1 Score: 279 bits (714), Expect = 1.390e-90 Identity = 177/231 (76.62%), Postives = 183/231 (79.22%), Query Frame = 1
Query: 1 LLKRKPEEQTRIARAVVDTDDVLWTLDQQPSEEDAATAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRDGVPPESPPPPAIVPGATPSQLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRE 693
L +R EEQTRIARAVVDTDDVLWTLDQ P E +AATA R XXXXXXXXXXXXXXXXXX IV ATP +LLRLVGGVDISFVKGSEENACASLVVL+FPSL+TVYEAYERVTMNHPY+SGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKV VRE
Sbjct: 6 LEERWLEEQTRIARAVVDTDDVLWTLDQPP-ERNAATARRPTPPPQHGQTQTEPKEMSSAAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XIVTSATPGRLLRLVGGVDISFVKGSEENACASLVVLDFPSLKTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVDVRE 233
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT4_ECTSI) HSP 1 Score: 257 bits (656), Expect = 3.810e-83 Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 1
Query: 307 SQLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRE 693
S+LLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPY+SGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRE
Sbjct: 3 SRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRE 131
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Endonuclease (V-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW13_9STRA) HSP 1 Score: 186 bits (472), Expect = 5.210e-55 Identity = 92/131 (70.23%), Postives = 106/131 (80.92%), Query Frame = 1
Query: 298 ATPSQLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
A P + LR VGGVDISF K S +NACASLVVL FP L V++ + RVTM PY+SGFLAFREV+H+A LV +LR ERPDL PDVVFVDGNG LHPRGAGLA HLGV+ LRT+G+GKTFL +DGLT+ GVR
Sbjct: 43 AAPVRPLRYVGGVDISFTKNSSDNACASLVVLSFPELIVVHQLHARVTMTLPYISGFLAFREVEHIAALVERLRAERPDLLPDVVFVDGNGVLHPRGAGLASHLGVLCNLRTIGIGKTFLHIDGLTRDGVR 173
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Endonuclease (V n=1 Tax=Acanthamoeba castellanii medusavirus TaxID=2080449 RepID=A0A3T1CXH4_9VIRU) HSP 1 Score: 164 bits (415), Expect = 3.650e-47 Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query: 316 LRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
+R VGGVDISFVKG +ACASLVVL +PSL+ V+ V M PY+SGFLAFRE HLARL+ LR ERPDLEP V+FVDGNG LHPRG GLA HLGV++G+ T+G+ KTFL VDGL V+
Sbjct: 28 VRYVGGVDISFVKGDAVSACASLVVLAYPSLELVWSVERMVAMELPYISGFLAFREAPHLARLIDHLRAERPDLEPQVLFVDGNGILHPRGFGLASHLGVLSGIPTIGVAKTFLHVDGLDARSVK 152
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZRE1_9STRA) HSP 1 Score: 165 bits (418), Expect = 5.720e-47 Identity = 84/138 (60.87%), Postives = 103/138 (74.64%), Query Frame = 1
Query: 295 GATPS------QLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
GATPS ++L+ V GVDISF+KGS E+ACAS+VVLE+PSL +YEA+ V++ PY++GFLAFREV L +L LRR RPDL PDV VDGNG LHP+G GLA H GV+ + TVG+GKTFL VDGLTK V+
Sbjct: 31 GATPSDETTDCKVLKRVAGVDISFLKGSSEHACASIVVLEYPSLSVLYEAFAYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPDLLPDVTLVDGNGVLHPQGFGLASHFGVLESVPTVGVGKTFLHVDGLTKADVK 168
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=W2YQG1_PHYPR) HSP 1 Score: 165 bits (417), Expect = 1.090e-46 Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = 1
Query: 298 ATPS------QLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
ATPS +LLR V GVDISF+KGS+E+ACAS+VVL+FPSL +YEA+ V++ PY++GFLAFREV L +L LRR RPDL PDV VDGNG LHP+G GLA H GV+ + T+G+GKTFL VDGLTK V+
Sbjct: 43 ATPSDETSSCKLLRRVAGVDISFLKGSDEHACASIVVLDFPSLTVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPDLLPDVTLVDGNGILHPQGFGLASHFGVLENIPTIGVGKTFLHVDGLTKPDVK 179
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G786_PHYRM) HSP 1 Score: 160 bits (404), Expect = 3.300e-45 Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 301 TPSQLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
T +LLR V GVD+SF+KGS E+ACAS+VVLE+PSL +YEA+ V++ PY++GFLAFREV L +L L R RPDL PDV VDGNG LHP+G GLA H GV+ + T+G+GKTFL VDGLTK V+
Sbjct: 32 TNCKLLRRVAGVDVSFLKGSNEHACASIVVLEYPSLTVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYEDLCRRRPDLLPDVTLVDGNGVLHPQGFGLASHFGVLESIPTIGVGKTFLHVDGLTKPDVK 161
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: DnaJ (subfamily A member 1 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8B4S8_PHYNI) HSP 1 Score: 165 bits (417), Expect = 1.170e-43 Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = 1
Query: 298 ATPS------QLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
ATPS +LLR V GVDISF+KGS+E+ACAS+VVL+FPSL +YEA+ V++ PY++GFLAFREV L +L LRR RPDL PDV VDGNG LHP+G GLA H GV+ + T+G+GKTFL VDGLTK V+
Sbjct: 430 ATPSDETSSCKLLRRVAGVDISFLKGSDEHACASIVVLDFPSLTVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPDLLPDVTLVDGNGILHPQGFGLASHFGVLENIPTIGVGKTFLHVDGLTKPDVK 566
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MXK3_PHYIT) HSP 1 Score: 155 bits (392), Expect = 1.180e-43 Identity = 74/122 (60.66%), Postives = 95/122 (77.87%), Query Frame = 1
Query: 325 VGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
+ GVDISF+KGS+E+ACAS+VVL+FP+L +YEA+ V++ PY++GFLAFREV L +L LRR RP+L PDV VDGNG LHP+G GLA H GV+ + T+G+GKTFL VDGLTK V+
Sbjct: 8 IAGVDISFLKGSDEHACASVVVLDFPALTVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPELLPDVTLVDGNGVLHPQGFGLASHFGVLENISTIGVGKTFLHVDGLTKPDVK 129
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YN11_PHYSP) HSP 1 Score: 164 bits (416), Expect = 1.390e-43 Identity = 79/127 (62.20%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 310 QLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYMSGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVR 690
+ L+ V GVDISF+KGS E+ACAS+VVLE+PSL +YEA+ V++ PY++GFLAFREV L +L LRR RPDL PDV VDGNG LHP+G GLA H GV+ G+ T+G+GKTFL VDGLTK+ V+
Sbjct: 424 KALKRVAGVDISFLKGSNEHACASIVVLEYPSLSVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPDLLPDVTLVDGNGVLHPQGFGLASHFGVLAGIPTIGVGKTFLHVDGLTKLDVK 550 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8980.17073.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8980.17073.1 >prot_E_fasciculatus_S2_contig8980.17073.1 ID=prot_E_fasciculatus_S2_contig8980.17073.1|Name=mRNA_E_fasciculatus_S2_contig8980.17073.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp LLKRKPEEQTRIARAVVDTDDVLWTLDQQPSEEDAATAPRPTPPPQDGQAback to top mRNA from alignment at E_fasciculatus_S2_contig8980:4396..6135+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8980.17073.1 ID=mRNA_E_fasciculatus_S2_contig8980.17073.1|Name=mRNA_E_fasciculatus_S2_contig8980.17073.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1740bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8980:4396..6135+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8980:4396..6135+ >mRNA_E_fasciculatus_S2_contig8980.17073.1 ID=mRNA_E_fasciculatus_S2_contig8980.17073.1|Name=mRNA_E_fasciculatus_S2_contig8980.17073.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8980:4396..6135+ (Ectocarpus fasciculatus EfasUO2)back to top |