mRNA_E_fasciculatus_S2_contig898.17072.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig898.17072.1
Unique NamemRNA_E_fasciculatus_S2_contig898.17072.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: DUF1115 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP9_ECTSI)

HSP 1 Score: 528 bits (1360), Expect = 2.570e-184
Identity = 270/303 (89.11%), Postives = 284/303 (93.73%), Query Frame = 1
Query:   52 MGEEEAKLSLQETLTMQLDEMELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQQAEEIRLQEALAKTPLLSFRCTLPLKEAQLRVRLPHEYPDAPLLVTVEGTPQLTVLARKVLTDAVTDEATRLSRDSRREPQCLEVLGAAMQTSADLADRESTRGQASQAGGCNEISGCGGGGGMSTSTAPCLPHTCSSEGEERDVSHHTNNLGPTKSVLAKPAEPDAEPIFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKV 960
            MGEEEAK+SL E LTMQLDEMELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQ+AEEIRLQEALA TPLLSFRCTLPLKEAQLRVRLPHEYPDAPLLV VEGTPQLTV ARK ++DAVTDEATRLSRD+RREPQCLEVLGAAMQTS DLADREST GQASQAGGC+EISGCGGGG M+TS APCLPHTCSSEGEER +SHH+NN+G TK V++   EPD EP+FLGRRLIYSHHIIATQKRTGI+KAARDLRLGGFSKV GWPGVIVVEGEEGSCEDFVSTLRGWRWKHL VRGEEKV
Sbjct:    1 MGEEEAKMSLHEALTMQLDEMELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQKAEEIRLQEALADTPLLSFRCTLPLKEAQLRVRLPHEYPDAPLLVKVEGTPQLTVSARKAISDAVTDEATRLSRDNRREPQCLEVLGAAMQTSVDLADRESTGGQASQAGGCHEISGCGGGG-MTTSAAPCLPHTCSSEGEERGISHHSNNVGATKRVVSNSGEPDGEPVFLGRRLIYSHHIIATQKRTGIMKAARDLRLGGFSKV-GWPGVIVVEGEEGSCEDFVSTLRGWRWKHLTVRGEEKV 301          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: DUF1115 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV49_9PHAE)

HSP 1 Score: 457 bits (1175), Expect = 1.500e-156
Identity = 236/283 (83.39%), Postives = 254/283 (89.75%), Query Frame = 1
Query:  112 MELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQQAEEIRLQEALAKTPLLSFRCTLPLKEAQLRVRLPHEYPDAPLLVTVEGTPQLTVLARKVLTDAVTDEATRLSRDSRREPQCLEVLGAAMQTSADLADRESTRGQASQAGGCNEISGCGGGGGMSTSTAPCLPHTCSSEGEERDVSHHTNNLGPTKSVLAKPAEPDAEPIFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKV 960
            MELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQ+AEE RL+EALA TPLLSFRCTLPLKEAQLRVRLPH+YPD  LLVT+EGTPQLTV ARK +TDAVTD+ATRLSRD RREPQCLEVLGAAMQTSADLA REST G             CGGGG M++STAPCLP+TCSSEGEERDVSH TN++G TKSV++K A+P+ EP+FLGRRLIYSHHIIATQKR GI+KAARDLRLGGFSKV GWPGVIVVEGEEGSCE+FVSTLRGWRWKHLAVRGEEKV
Sbjct:    1 MELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQKAEETRLKEALADTPLLSFRCTLPLKEAQLRVRLPHDYPDTLLLVTIEGTPQLTVSARKAITDAVTDKATRLSRDRRREPQCLEVLGAAMQTSADLAGRESTAGXXXXXXXXXXXXXCGGGG-MTSSTAPCLPYTCSSEGEERDVSHLTNSVGATKSVISKSAQPEGEPVFLGRRLIYSHHIIATQKRAGIIKAARDLRLGGFSKV-GWPGVIVVEGEEGSCEEFVSTLRGWRWKHLAVRGEEKV 281          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y146_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 8.990e-20
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  739 LGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKVE 963
            LGRRLI+SHHII  +KR  +   A++L LGG+ K+ GWPG+I++EGEE  CE+F+  +R W+W+HL VRGEE V+
Sbjct:  136 LGRRLIWSHHIIGKEKRRDMKAIAKELELGGYCKI-GWPGIIILEGEEEGCEEFIRQIRRWQWQHLVVRGEETVD 209          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: DUF1115 (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z868_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.580e-19
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  673 NNLGPTKSVLAKPAEPDAEPIFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEK 957
            N+     S      + D  P+FLGR+LIYSHHIIA  KR  I   A+D +LGGF K+ GWPG+IV+EGEE +C  F   +R  RW++L +RGEE+
Sbjct:  204 NSSAQHSSAAGTTNDRDKLPLFLGRKLIYSHHIIAKAKRKAISDLAKDYQLGGFFKI-GWPGIIVIEGEEENCNSFCDEIRSMRWQYLVIRGEER 297          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: DUF1115 (domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAK9_THAOC)

HSP 1 Score: 100 bits (249), Expect = 4.110e-19
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  700 LAKPAEPDAEPIFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKV 960
            +++ A  +   + LGRR+IYSHHIIA  KR G+   A    LGG++K+ GWPGV++VEGEE SC+ FV  ++ WRW+ L VRGEE++
Sbjct:  169 VSESAMSNRADLTLGRRIIYSHHIIANSKRRGLHDLASQYNLGGYAKI-GWPGVVLVEGEESSCQSFVDEIKRWRWQQLQVRGEEQI 254          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: DUF1115 (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F204_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.100e-19
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  736 FLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKVESRTEE 978
             + R+LIYSHHIIA  KR  I     D  +GG+ K+ GWPG+I++EGEE SC DF+  +R  RW+HL VRGE + +  T E
Sbjct:    1 MISRKLIYSHHIIAKSKRKAISDLGNDYNIGGYYKI-GWPGIIIIEGEENSCNDFIDEIRSMRWQHLVVRGETEKQHLTFE 80          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: RWD (domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QTX1_PHYPN)

HSP 1 Score: 96.3 bits (238), Expect = 2.610e-18
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  688 TKSVLAKPAEPDAEPIFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKVE 963
            +K+V   P+E  + P  LGRR IY HHIIA+ KR  + + A +LRLGGFSK+ GWPGV++VEG E + +++V  L+  RWK + VRGE+  E
Sbjct:  157 SKAVTVGPSEETSTPPTLGRRAIYFHHIIASNKRRVVKEWATELRLGGFSKI-GWPGVVIVEGAEPNVQEYVRRLQHLRWKQITVRGEQTEE 247          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YPA5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.090e-17
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  733 IFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKVESRTEERWTRNAACL 1005
            + LGRRLIYSHHIIA  KR  I   A    LGG++K+ GWPG+I+VEG E  C  +V  +R +RW++L VRGEE+ E  T+   + NA+ L
Sbjct:   77 LVLGRRLIYSHHIIANSKRKAIADLASQYNLGGYAKI-GWPGIIIVEGNEEDCISYVDEIRTFRWQYLTVRGEEQEEIVTKNNESGNASSL 166          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DP79_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 1.160e-17
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  727 EPIFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKVE 963
            E + LGRR+IYSHHIIA  KRT +   A +  LGG SK+ GWPG I+VEGEE   + +V  L+  RWKHLAVRGEE V+
Sbjct:  189 ERVILGRRVIYSHHIIAQSKRTTVKNLAEENELGGLSKI-GWPGAIIVEGEESKVQAYVDALKKLRWKHLAVRGEEIVK 266          
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Match: RWD (domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FJI8_9ALVE)

HSP 1 Score: 96.3 bits (238), Expect = 1.270e-17
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  640 EGEERDVSHHTNNLGPTKSVLAKPAE-PDAEPIFLGRRLIYSHHIIATQKRTGIVKAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGEEKVESR 969
            E EE D    +++ GP   +   P E   A P  LGRRL+YSHHI A  K+  I++ A +L LGG+SKV G+PGVIVVEG+E   +++VS L+  RWKH  VRGE+  E R
Sbjct:  200 ESEEEDGDGASSSSGPRVVMGTFPVEFRRAGPPVLGRRLLYSHHIRAESKKRAILEWAAELGLGGYSKV-GYPGVIVVEGDEQCVQEYVSRLQRLRWKHFVVRGEQITEGR 309          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig898.17072.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DUF11152.570e-18489.11domain-containing protein n=1 Tax=Ectocarpus silic... [more]
DUF11151.500e-15683.39domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical8.990e-2056.00protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
DUF11152.580e-1949.47domain-containing protein n=1 Tax=Pseudo-nitzschia... [more]
DUF11154.110e-1950.57domain-containing protein n=1 Tax=Thalassiosira oc... [more]
DUF11158.100e-1950.62domain-containing protein n=1 Tax=Fragilariopsis c... [more]
RWD2.610e-1850.00domain-containing protein n=8 Tax=Phytophthora par... [more]
Hypothetical1.090e-1750.55protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.160e-1758.23protein n=1 Tax=Amorphochlora amoebiformis TaxID=1... [more]
RWD1.270e-1748.65domain-containing protein n=1 Tax=Chromera velia C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig898contigE_fasciculatus_S2_contig898:22115..24581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score534.6
Seed ortholog evalue3.1e-149
Seed eggNOG ortholog2880.D8LQP9
Preferred nameRWDD2B
Model size1491
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Protein of unknown function (DUF1115)
EggNOG OGs28IR6@1,2QR2G@2759
Ec32 ortholog descriptionUncharacterised conserved protein UCP038021, RWD
Ec32 orthologEc-24_001830.1
Cds size966
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842550.9148202-UTR-E_fasciculatus_S2_contig898:22114..225881696842550.9148202-UTR-E_fasciculatus_S2_contig898:22114..22588Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig898 22115..22588 -
1696842550.973624-UTR-E_fasciculatus_S2_contig898:24530..245811696842550.973624-UTR-E_fasciculatus_S2_contig898:24530..24581Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig898 24531..24581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842550.930748-CDS-E_fasciculatus_S2_contig898:22588..227621696842550.930748-CDS-E_fasciculatus_S2_contig898:22588..22762Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 22589..22762 -
1696842550.9423761-CDS-E_fasciculatus_S2_contig898:23124..238561696842550.9423761-CDS-E_fasciculatus_S2_contig898:23124..23856Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 23125..23856 -
1696842550.9566302-CDS-E_fasciculatus_S2_contig898:24470..245301696842550.9566302-CDS-E_fasciculatus_S2_contig898:24470..24530Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 24471..24530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig898.17072.1prot_E_fasciculatus_S2_contig898.17072.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig898 22589..24530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig898.17072.1

>prot_E_fasciculatus_S2_contig898.17072.1 ID=prot_E_fasciculatus_S2_contig898.17072.1|Name=mRNA_E_fasciculatus_S2_contig898.17072.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=322bp
MGEEEAKLSLQETLTMQLDEMELLETAYPELTFDTPDARPLLRAALDGSF
ERQHTSDQQAEEIRLQEALAKTPLLSFRCTLPLKEAQLRVRLPHEYPDAP
LLVTVEGTPQLTVLARKVLTDAVTDEATRLSRDSRREPQCLEVLGAAMQT
SADLADRESTRGQASQAGGCNEISGCGGGGGMSTSTAPCLPHTCSSEGEE
RDVSHHTNNLGPTKSVLAKPAEPDAEPIFLGRRLIYSHHIIATQKRTGIV
KAARDLRLGGFSKVVGWPGVIVVEGEEGSCEDFVSTLRGWRWKHLAVRGE
EKVESRTEERWTRNAACLFSW*
back to top

mRNA from alignment at E_fasciculatus_S2_contig898:22115..24581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig898.17072.1 ID=mRNA_E_fasciculatus_S2_contig898.17072.1|Name=mRNA_E_fasciculatus_S2_contig898.17072.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2467bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig898:22115..24581- (Ectocarpus fasciculatus EfasUO2)
TGGGCATGTCTCGATCATTTGATCGGGCGCCTCGATGCAATTGGTGACAG CATGGGCGAAGAGGAGGCAAAACTATCACTACAGGAGACTCTCACAATGC AACTCGACGAGGTTTGACCGCATGCATATTGGAGAATACGCATCAGCTGT TATCACAGAAGTCATCGGCTCATTCATGTTGCTGCCCGTAGTAGTAGTAG TAGAAGTAGATAGATGGAAGGAGTATGACTATCTACAAATGCTGCCCAAA AGACTACATACTGTAGCTTCTGTACTTTGGCAGTGAAGTCAAAGTGAAGT GCTGCTTAGCTGCAGCAGTATGTAGTCCTTGGGCAGCATTTGTACATACA GTAGTAGTCATACAAATCCATCCATGAACTTGTGACATATGCATCCTGGG GAAATTTGGTTGGGTTCGGTGGGTAAGGCGATGAAAACAAAGGCTAGAAA CCCTACTTTACATACACGCTGTAGATACACATCATCAGAAGTTAGTTGCA GAGAGCAGAGGGATGTGTAGAGAGAAGATAAACGGTATTGCCTGTAGTCT AGTGCTGCTGTGCATTTACTGGTTTTACACTTGCATATGCGCGCGTTCAT GGGCGAGGTTTGTTGATGCGGTTGGCCTGATCGGCACCCGACATTGACCT AAAAAATAGGACTGCTTCAACACAATTTTCATTACTCGCGAGTGCTCACC CTCCTACGACGATTTGTTGGGCCAGATGGAACTACTGGAGACGGCGTATC CCGAGTTGACCTTCGACACGCCGGATGCTCGCCCACTCCTGCGCGCGGCG CTTGATGGGTCGTTCGAGAGGCAACATACATCTGACCAACAAGCCGAAGA AATCCGGTTGCAAGAAGCCCTGGCCAAAACTCCTTTGCTATCATTCCGCT GCACCCTGCCGCTCAAAGAAGCCCAGCTTAGAGTTCGGCTGCCGCACGAA TACCCTGACGCTCCCCTCCTTGTCACGGTTGAGGGAACACCGCAGCTCAC GGTGTTGGCGAGGAAGGTATTAACAGATGCGGTTACAGACGAGGCGACTA GGCTGTCGCGGGACAGTAGAAGAGAGCCACAGTGCCTCGAGGTGCTGGGG GCGGCGATGCAGACATCGGCTGATTTGGCTGATCGTGAGTCGACTCGGGG GCAAGCTTCACAAGCAGGAGGTTGCAACGAGATCTCGGGATGCGGGGGCG GCGGCGGTATGAGCACCAGCACAGCTCCTTGCTTGCCGCACACGTGCTCA TCGGAAGGGGAAGAACGGGACGTCTCTCATCATACCAACAACTTGGGACC AACAAAAAGTGTTTTGGCGAAACCAGCGGAGCCTGACGCAGAACCTATTT TCCTGGGCAGGCGCTTAATATATTCTCACCACATCATTGCAACGCAGAAG AGGACGGGGATCGTAAAGGCGGCGAGAGATCTCAGGCTGGGGGGTTTCAG CAAGGTGGTTTTTTCGGCGCTAGCACTAAACGGCGTTACACCGGTTGTGC ATTTAGGCCGATGTGGCTAGAAACAGGGATCGCCTCGTGAGCAACTGTAA GGAATTTGCGAGACAAAGTGAATGCCCGCCAACGGGTTACAGGTACACAA GAACTGCGCAGGTACACGACGAACGGGGTGCATTTGCCTACAAGCAATGG CCCGCTTTTGCTTCCTGTCTACCTCCTTGCTTTCGTTCTTTTTTCCATGC CCCCGAAAGTCTTTCTTTTTTCCGAGGTGTACACAAGTATTACTTCAAAC TTCGTGGGTGCTGATTCTTTACACGTCACTTGATCACTTCAACTTTCGTT GTACCTCTCATCGAAAAAGGTGGGCTGGCCTGGCGTGATCGTGGTTGAAG GCGAAGAAGGGTCCTGTGAAGATTTCGTTAGCACCCTGCGCGGTTGGCGT TGGAAGCACCTTGCAGTTCGCGGAGAAGAAAAAGTCGAATCCCGAACGGA AGAACGTTGGACCAGGAACGCCGCCTGCCTGTTCTCCTGGTAGAACTTGG GGAAAAGGAAGGAGTGTCGGCTCTCGCAAAGCACTGCAGAGAAGCAGGTC TTGGCGAGCTTTTCTCTACCCTTCTTCGATAACGGGTAATACCGCATTCT ACCCCAGTACGAGCTCCCCAGCACCGCCGGGTTCGTTATAATTCATCAAA CCTGTTGACCATGACATCACCCCGGTGGCCGTGCTGTCTGTGACCTTCTC CCGCGATGCCGGAGTCCGGAAACCCTGCCAGCGCCGCTGGACTTGTGTCA TGTACCGTCCGTGAGGATGTCGGGGCATGAACGTCGTCCTAGGATTAGGC TGCATAGATGAGGCCGGTCGCACAGTGCGAAGCCGATGGCATCGCAAGGA ACGGATCTTGAACTGTTCAAGGCTGGCTTAGCCCCCTTGCCCACACTCCA AAAGGCTGGTTCTAGCTTTGACGCACAATGTTTCGACGCACTTCCCACAC GGTACCCCAACAGCTCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig898:22115..24581-

>mRNA_E_fasciculatus_S2_contig898.17072.1 ID=mRNA_E_fasciculatus_S2_contig898.17072.1|Name=mRNA_E_fasciculatus_S2_contig898.17072.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=966bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig898:22115..24581- (Ectocarpus fasciculatus EfasUO2)
ATGGGCGAAGAGGAGGCAAAACTATCACTACAGGAGACTCTCACAATGCA
ACTCGACGAGATGGAACTACTGGAGACGGCGTATCCCGAGTTGACCTTCG
ACACGCCGGATGCTCGCCCACTCCTGCGCGCGGCGCTTGATGGGTCGTTC
GAGAGGCAACATACATCTGACCAACAAGCCGAAGAAATCCGGTTGCAAGA
AGCCCTGGCCAAAACTCCTTTGCTATCATTCCGCTGCACCCTGCCGCTCA
AAGAAGCCCAGCTTAGAGTTCGGCTGCCGCACGAATACCCTGACGCTCCC
CTCCTTGTCACGGTTGAGGGAACACCGCAGCTCACGGTGTTGGCGAGGAA
GGTATTAACAGATGCGGTTACAGACGAGGCGACTAGGCTGTCGCGGGACA
GTAGAAGAGAGCCACAGTGCCTCGAGGTGCTGGGGGCGGCGATGCAGACA
TCGGCTGATTTGGCTGATCGTGAGTCGACTCGGGGGCAAGCTTCACAAGC
AGGAGGTTGCAACGAGATCTCGGGATGCGGGGGCGGCGGCGGTATGAGCA
CCAGCACAGCTCCTTGCTTGCCGCACACGTGCTCATCGGAAGGGGAAGAA
CGGGACGTCTCTCATCATACCAACAACTTGGGACCAACAAAAAGTGTTTT
GGCGAAACCAGCGGAGCCTGACGCAGAACCTATTTTCCTGGGCAGGCGCT
TAATATATTCTCACCACATCATTGCAACGCAGAAGAGGACGGGGATCGTA
AAGGCGGCGAGAGATCTCAGGCTGGGGGGTTTCAGCAAGGTGGTGGGCTG
GCCTGGCGTGATCGTGGTTGAAGGCGAAGAAGGGTCCTGTGAAGATTTCG
TTAGCACCCTGCGCGGTTGGCGTTGGAAGCACCTTGCAGTTCGCGGAGAA
GAAAAAGTCGAATCCCGAACGGAAGAACGTTGGACCAGGAACGCCGCCTG
CCTGTTCTCCTGGTAG
back to top