mRNA_E_fasciculatus_S2_contig898.17071.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig898.17071.1
Unique NamemRNA_E_fasciculatus_S2_contig898.17071.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig898.17071.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQP8_ECTSI)

HSP 1 Score: 444 bits (1141), Expect = 6.100e-150
Identity = 232/260 (89.23%), Postives = 236/260 (90.77%), Query Frame = 1 
Query:   85 MMDWVSSKATRLASLLLLSQACVLCSGFVPGAPPAASPYLAHHTKFGTDTSTTSAAGYDIFRAL--GSKRSGTADAVTSSPRRGSMSRLSMSMSPAPPVKPPKKRTGGGG-NGDELFVRELIEPEKSVILTSWRDYAQRDGSEKFVESIEILNKMVAWRSGVVAARKRRFTLACCKGSSVQAVACVQIGPKNESVRSFLAQEACMSVCLLNVDPSSPKFKAGAHLCREIKDIGKLENMAVTFDPIKDIYSGRFYAATLAM 855
            MMDWVSSKATRL  LLLLSQACVLCSGFVPG  P+ASPYLAHH KF  DTSTTSAAGYD FRAL  GSKRSGTADAVTSSPRRG +SRLSMSMSP+PPVKP          NGDELFVRELIEPEKSVILTSWRDYAQRDG EKF E IEILNKMVAWRSGVVAARKRRFTLACCKGSSVQAVACVQIGPKNESVRSFLAQEACMSVCLLNVDPSSPKFKAGAHLCREIKDIGKLENMAV+FDPIKDIYSGRFYAATLAM
Sbjct:    1 MMDWVSSKATRLVILLLLSQACVLCSGFVPGVSPSASPYLAHHAKFSPDTSTTSAAGYDFFRALTLGSKRSGTADAVTSSPRRGPISRLSMSMSPSPPVKPXXXXXXXXXXNGDELFVRELIEPEKSVILTSWRDYAQRDGGEKFAECIEILNKMVAWRSGVVAARKRRFTLACCKGSSVQAVACVQIGPKNESVRSFLAQEACMSVCLLNVDPSSPKFKAGAHLCREIKDIGKLENMAVSFDPIKDIYSGRFYAATLAM 260
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BLAST of mRNA_E_fasciculatus_S2_contig898.17071.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR80_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.370e-38
Identity = 72/169 (42.60%), Postives = 110/169 (65.09%), Query Frame = 1 
Query:  364 APPVKPPK-KRTGGGGNGDELFVRELIEPEKSVILTSWRDYAQRDGSE----KFVESIEILNKMVAWRSGVVAARKRRFTLACCKGSSVQAVACVQIGPKNESVRSFLAQEACMSVCLLNVDPSSPKFKAGAHLCREIKDIGKLENMAVTFDPIKDIYSGRFYAATLAM 855
            +PP KPP+ K+ GGGGN  + ++R++ + EK ++L  W  Y++R   E    +  E +++  KM AWR G   ARKRRF LA C+G +V AV CVQIGP N S  +F+ Q+  M+V  + V PS  K  AG  L +++K+IG+ + + V F+P+K++Y GRFY A+++M
Sbjct:    5 SPPTKPPELKKYGGGGN--DPYIRDIDDEEKQLVLGGWIGYSRRIAMEEEDPRLEEFMQVCRKMQAWRRGTGGARKRRFALAACQGDNVDAVVCVQIGPDNRSFAAFITQDMVMTVGFIAVSPSRAKLGAGTFLVKQLKEIGRAQGIRVDFEPLKEVYKGRFYLASISM 171
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig898.17071.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.100e-15089.23protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQP8... [more]
Uncharacterized2.370e-3842.60protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig898contigE_fasciculatus_S2_contig898:16892..21453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score446.4
Seed ortholog evalue8.9e-123
Seed eggNOG ortholog2880.D8LQP8
Model size2018
Hectar predicted targeting categorychloroplast
Exons5
EggNOG OGs2EUBT@1,2SWI2@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001820.1
Cds size774
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig898.17071.1prot_E_fasciculatus_S2_contig898.17071.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig898 17322..20293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842550.8151002-UTR-E_fasciculatus_S2_contig898:16891..169321696842550.8151002-UTR-E_fasciculatus_S2_contig898:16891..16932Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig898 16892..16932 +
1696842550.8296928-UTR-E_fasciculatus_S2_contig898:17278..173211696842550.8296928-UTR-E_fasciculatus_S2_contig898:17278..17321Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig898 17279..17321 +
1696842550.8894083-UTR-E_fasciculatus_S2_contig898:20293..214531696842550.8894083-UTR-E_fasciculatus_S2_contig898:20293..21453Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig898 20294..21453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842550.840875-CDS-E_fasciculatus_S2_contig898:17321..176181696842550.840875-CDS-E_fasciculatus_S2_contig898:17321..17618Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 17322..17618 +
1696842550.8547347-CDS-E_fasciculatus_S2_contig898:18926..190851696842550.8547347-CDS-E_fasciculatus_S2_contig898:18926..19085Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 18927..19085 +
1696842550.865226-CDS-E_fasciculatus_S2_contig898:19597..198161696842550.865226-CDS-E_fasciculatus_S2_contig898:19597..19816Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 19598..19816 +
1696842550.8766115-CDS-E_fasciculatus_S2_contig898:20194..202931696842550.8766115-CDS-E_fasciculatus_S2_contig898:20194..20293Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 20195..20293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig898.17071.1

>prot_E_fasciculatus_S2_contig898.17071.1 ID=prot_E_fasciculatus_S2_contig898.17071.1|Name=mRNA_E_fasciculatus_S2_contig898.17071.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=258bp
MMDWVSSKATRLASLLLLSQACVLCSGFVPGAPPAASPYLAHHTKFGTDT
STTSAAGYDIFRALGSKRSGTADAVTSSPRRGSMSRLSMSMSPAPPVKPP
KKRTGGGGNGDELFVRELIEPEKSVILTSWRDYAQRDGSEKFVESIEILN
KMVAWRSGVVAARKRRFTLACCKGSSVQAVACVQIGPKNESVRSFLAQEA
CMSVCLLNVDPSSPKFKAGAHLCREIKDIGKLENMAVTFDPIKDIYSGRF
YAATLAM*
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mRNA from alignment at E_fasciculatus_S2_contig898:16892..21453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig898.17071.1 ID=mRNA_E_fasciculatus_S2_contig898.17071.1|Name=mRNA_E_fasciculatus_S2_contig898.17071.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4562bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig898:16892..21453+ (Ectocarpus fasciculatus EfasUO2)
GTCACCGCCCAGTTCCAGAAGGGCGTGAGGAAGTTGTCGAGGTGCGTGTA
CGCGCCCGGTTTGTACTTGTAGGCGGCGATCATGTCTAGATCTTGCTTCG
ACAGCATCTTCCCGTCGCCGTTCGACTTGCCTCGCCACCGCCCAGTAGCC
TTCGTTTCGCACATGGCACAACCCTTGCGAGCTACGAACTCCGCTTTGCG
TCCGGTGCTGATGCGATGCACAACCACAACCAACGTGCCGGGGTACGTGA
CACGGGCTGCACTGCACCTGTCGTCCAACTTTTCCGAGAGCTCCACCAGC
GGGGGCTCCGCAGTTTGTGAAGCGGCGCAATCGATGTTGCACAGCACGCC
GCCTCGCCCTCCCTGTGCCGGATCGCACCACCAGCAGGAAAAAACGGGTG
CTGCTGCTGTGGTACCCCCATTGCCCAACCATGATGGACTGGGTCAGCTC
CAAGGCCACCAGGCTCGCGAGCCTGTTGCTGCTGTCCCAGGCTTGTGTTC
TCTGCTCGGGGTTCGTGCCAGGGGCGCCACCCGCGGCCTCTCCGTACCTG
GCGCATCACACCAAGTTCGGCACCGACACGTCAACGACCAGCGCAGCAGG
ATACGACATCTTCCGTGCCCTTGGAAGCAAGCGGAGCGGTACCGCTGATG
CCGTCACCAGCTCACCAAGAAGGGGTTCGATGAGCCGGCTATCCATGTCG
ATGTCCCCAGCTCCTCCGGTCAAGCCGGTATGTACACCGCGGCAGTCGGC
GGGGAAGTAGGTGTAGCAGTACCTCGTCAGACCCAACTCGTGAGCGATGC
AAGCAAGAACAGGCGTACATTATGCATACAGCGTTTCTCGCACACCCGAC
CTGATTTCGGGGTGCCCGGAGCGACCTGCTGTAACGTCGGGAACAGCTTT
ACCAGTGTAGAGAACCAACATCGAGCGAACCATGTTCTCCTTGCATTTTA
GAGCTGTAGGCCTGTAGGTAACAGAGCGTTTTCGCTCCAATTTCGTCCTG
AACTGGCCGCCCCCGTAGCGGCGAGCCTCCGGAAGCAATGCTGCTACGTT
TGTTGGACGCGTACCGGTATCGCACGTAGCCTATGCACCTACACATCAGC
GAGTGAGTAATTTTTCTCGCAAGGGGCGATAGGAGCAGAGAGGTGTGAAG
GGACCATCCCTCTCTACCAATTTTCAAACTCGTTTTTTCTTTTTTCAAAT
TCAACGCAACAGCTGGCGGCAGAATAAATTGGACCGGCAACACGCATCGG
CCGACCGCCCAAGGCCTGGAAGAATTCACCGATCGAAGTATGCACATAGG
GAACACAGATCGCACCTTGTGCCCGATCCCAGCTTCTACACGTTGGATGT
ATCAACCGAAATACGCTCCCAGCGCACAAGTAATGCAGCAGTAAGGGTGA
GCTGCGGATCCAATTCCTACGAGAGGGAAGAGACACAAGCTTCAATGGCA
GTACCGCGCGGTATGGGAGAGGAGAGGTTGCCGAGAGTATGCATAGCTTG
GGAGGTGCACTGGGCAAACAAGAAGAGGGGTAGACAACCCACGGAGTGGG
CTATTAGGCCTCAAAGCGCACCTACATGGACCAATGGGTGGAGGGACCAA
GCTGAAAGTCAAAAAGATGGCTGTCGAGAACGTAGACGAAAAGATACAAG
ATACACGAAGACGTGACAATTCAAGTGTCAATGCGGCTCCGAGTGCGAAG
ACTGGGCTCATGTTGTTGTAGAATGTCCGTGTCATGAAAAGGAGAGAGCA
ATATATATGGGTGTGCTGGAATAAGACGCGAAAAAATAGGGGGGAGTTAC
ACAGAGATGGTTGAAGCATGGAATAGCCAGGCGAAAACGGTCGCTATACG
TAACATCGATGGGAGAGATAGGATAGGGAAAAAATTTTTGAGCCAGAGAA
GGAAGGAACGATTGGCCATCGGTGATCGATCCTGTAGGAACAATGCCCCG
TCCTCTCGAGGAACTTTCGGTCATGCGAAACATGACAGTACGCCCCGACC
CCCCACTTGTACATCTATACGATCATCCCACTCAGCCCAAGAAACGCACG
GGCGGCGGGGGGAACGGGGACGAGTTGTTCGTGCGCGAGCTGATCGAACC
GGAGAAGAGCGTTATTCTTACGAGTTGGAGGGACTACGCCCAGCGGGACG
GCAGCGAGAAGTTCGTCGAGTCAATCGAGATCCTCAACAAGATGGTGAGC
ACAGGGAGACAGACTGCTGGTTGGTGCGGAGGGTGGGTGGATAGTGGATA
GGCATGACAGGCCGGTTTCAAGCAGCCGCGTTGTAGAGTGGCAAACAACC
AGGTAGACAAACACCCCGTCAGAGGTGCAAACATGGGGAACAGAGCGAGA
CGGTTGGGGTAGTCTTTTGATGCTCCGGATCCACGGTTGTGCACAAACGG
GACGTTGTCTGAAATCTAGGTGAGATAGTGGTCTGAACAAAAGATACAGA
TCCATCTCTCAGGGGGCATGCTCTCAGGGGGCACGCAGGAAATCAAGATG
CAGGATACCTTAAAAGTTCCCTCCCAGCCATCCCGCACCTTACGCCCTTT
ATGGCACACGCTCACTATGCCAATACTCCTGAACACAAGCACTATGGGTC
CTATTGTACTCGTAGAAGCACATGGCCATGTCCGGCGCATTCGCGTCTGT
TACGTTGTTGCCTTGCTTTTGCTTGAGCGAATGTCGTTTGGTACTTCACA
TTCCAGGTTGCGTGGAGATCAGGGGTGGTTGCGGCACGCAAACGACGATT
CACCCTAGCATGTTGCAAGGGCTCGAGCGTCCAAGCCGTGGCTTGCGTGC
AAATCGGACCGAAAAATGAATCCGTGCGGAGTTTTCTTGCCCAAGAGGCG
TGCATGTCGGTGTGCCTCTTGAACGTCGACCCGTCAAGTCCCAAGTTTAA
GGCTGGGGCCCACCTATGTAGAGAGGTGAGTGAGAACCAGCCGGACAGCC
GTTTCGTCTTTCGTCTTCGCGAAGCAGCAGATCTTTGAAAGGCGTCGAGC
ACCGAGAAAAGAGCGTGATGACGTTCCTCCTGTGCTGCAGAATGCCCTGA
GTGCACCTTGATGTGTCCAACCAGGGCAGAAACTGCAAGGCTATTATCGA
GCCTCCGTTGTAAATTGTGGTCACCAAGCGTAAGGTATGTGTGGCGCAGG
TGAATGTCCCTTGAGAGTCGGCTGCCATACACGTATGTGTCCGGCACACC
CCAAGGCTATGTTTTTTGTCATTTACATGTATTTTGCTCCCCAGCCTGCT
CTCGCAACTAACCCGCCGTTCTCGCCCCAACCGACCAACGCGCATCTTTA
CAGATAAAGGACATTGGGAAGTTGGAGAACATGGCGGTAACGTTCGATCC
GATCAAAGATATTTACTCCGGGCGCTTTTATGCTGCAACTCTCGCCATGT
AGAGGTGGGCGAAGGCATGAGAAAGGATATATTTGACGCCCCAACCGACC
CCCGTGTGGTACACTGGTGGATAGTGCGGGTTTTCGACGGTTGGTCGATC
ACCTCCCCCACACGTGGTGACGCAACTCGGGACACGGGATTGTATGTAGG
GACGTGAGATTGGTGGCAAGCTGCCGCCACGAATGGTTCCCCAGATTCCT
TCTGTTTCTTGTTTTTTGGCTTGAGTAAAAGCCGCGCGTCATGAGTGTGG
GCAACAGCAGCAGCCATTCGCACCGAGCACAAGCAGCGTTGGATGCCCTG
GTGAAAATATGTATGCACATTGGGCTGTTTATTGCACGGCTTATCCATGG
ATAGCGGCTGCCTGGTCTTGCATGTGTCCCGATCATGTTAGACGGCGGCC
ATCGTTGTGTAACGCCTGTGTTTTGTTAGTGAAAAGAGATCCCGCGGCGG
GTGATAGAACCGCCGTGTGATCCCTTCCGTTTGAGCTTCTCGAGCTGTGC
GCCATACTGCTCTTTGACTGCTGCTGGGTGGTCGTGCACGTCTGTTGGGG
TTCGCTTGCCTGCAAGACATTGGATTTTCACCAGAGCAGGTAAATCACAT
ATGGTGTTCGGGTGTACTTTTTAATCTGGGATTAGGGCGGGGGTAATGGC
GCCGCAAGCAGGCCCGGCAGGCCTGGTATCCTCGCACGTGTAGTTCGGGG
TCGCATGTGTAAATCGGAGTTTGTGCGTCGCATGACTTGTCTGGCAGAAG
TATCTGATGTCTAGTGTAACGTTTTTTTTGTTGAAAGTTCAATGTACGTG
ATGAGTTATTGCTGGCGGTGTGTGAGTCAAAAGTCAGACGGGACGCTCCT
GTCAAACATGTCACGTTGTGTGTCGGTAAAAGCCTGCGCAAAAATTGTGT
CTTGGGCAACAGAGCAGCGTGGTGTATGGTGTAGAGGGCGGTGGACAGAA
GAGAGCATGAACGAACTCAAGCGTTGTACCATGGGCGCAGGGATACGACG
CGTGGTGCTTTGGGTGGTAGGGGCCGCGTCCGGCTGCCTACGACGAATTA
TTTCAAGTTTTGTTGTCATATTTGAAAGAATGAAAATCAACCAATATCAT
GTTTTTGCTTGGTTCCAACACATCCAAGGTTTGACATGCATGGGAAGCCC
TTTTTGGCGCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig898:16892..21453+

>mRNA_E_fasciculatus_S2_contig898.17071.1 ID=mRNA_E_fasciculatus_S2_contig898.17071.1|Name=mRNA_E_fasciculatus_S2_contig898.17071.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=774bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig898:16892..21453+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGACTGGGTCAGCTCCAAGGCCACCAGGCTCGCGAGCCTGTTGCT
GCTGTCCCAGGCTTGTGTTCTCTGCTCGGGGTTCGTGCCAGGGGCGCCAC
CCGCGGCCTCTCCGTACCTGGCGCATCACACCAAGTTCGGCACCGACACG
TCAACGACCAGCGCAGCAGGATACGACATCTTCCGTGCCCTTGGAAGCAA
GCGGAGCGGTACCGCTGATGCCGTCACCAGCTCACCAAGAAGGGGTTCGA
TGAGCCGGCTATCCATGTCGATGTCCCCAGCTCCTCCGGTCAAGCCGCCC
AAGAAACGCACGGGCGGCGGGGGGAACGGGGACGAGTTGTTCGTGCGCGA
GCTGATCGAACCGGAGAAGAGCGTTATTCTTACGAGTTGGAGGGACTACG
CCCAGCGGGACGGCAGCGAGAAGTTCGTCGAGTCAATCGAGATCCTCAAC
AAGATGGTTGCGTGGAGATCAGGGGTGGTTGCGGCACGCAAACGACGATT
CACCCTAGCATGTTGCAAGGGCTCGAGCGTCCAAGCCGTGGCTTGCGTGC
AAATCGGACCGAAAAATGAATCCGTGCGGAGTTTTCTTGCCCAAGAGGCG
TGCATGTCGGTGTGCCTCTTGAACGTCGACCCGTCAAGTCCCAAGTTTAA
GGCTGGGGCCCACCTATGTAGAGAGATAAAGGACATTGGGAAGTTGGAGA
ACATGGCGGTAACGTTCGATCCGATCAAAGATATTTACTCCGGGCGCTTT
TATGCTGCAACTCTCGCCATGTAG
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