mRNA_E_fasciculatus_S2_contig898.17069.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig898.17069.1
Unique NamemRNA_E_fasciculatus_S2_contig898.17069.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig898.17069.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP5_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 2.230e-153
Identity = 275/331 (83.08%), Postives = 286/331 (86.40%), Query Frame = 1 
Query:  151 VSGNKLHTVMSVRAEDERTMALLRKECDQSVVTSMEAKIKEKQAMTLVSGLQADIEALQAQVGVLQSALWLEKERASAAVRASRGATGPATRGGTSKAALTMTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGSSGKRRNGVPSKRIGERGGPRRPATAPAQDTQGLRGKLPHCNAGGLYGRSKPWEGGVGGNCSSQHLDGGRGFLASERGAGAGSPDGTTATDGSFADPWASNDYFHGGSGGGGKKSPQGHQQERSVEKFVLDLDGRRGYAGXXXXXXXXXXXXXXXXXXXXXGQTTITPFQRWKRERGIVSPGVAEMFGGQGCCS 1143
            + GNKLHTVMSVRAEDERTMALLRKECDQS+VTSMEAKIKEKQAMTLVSGLQADIEALQ QVGVLQSALWLEKERASAAVRASRGA GP+TRGG SKAALTMT   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFG SGKRRNG+P KRIGERGG RRPATAPA+DTQ LRGKLPH NAG LYGR+KP  GGVGGNCSSQHL GG GFLASE+G GAGSPDGTTATDGSF D WASNDYFHG   G G+KSPQG+QQERS+E+FVLDLDGRRGYAG                     GQTTITPFQRWKRERGIVSPGVAEMFGGQGCCS
Sbjct:    7 IPGNKLHTVMSVRAEDERTMALLRKECDQSMVTSMEAKIKEKQAMTLVSGLQADIEALQTQVGVLQSALWLEKERASAAVRASRGAIGPSTRGGVSKAALTMTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPSGKRRNGIPLKRIGERGGRRRPATAPAKDTQALRGKLPHGNAGDLYGRNKPRGGGVGGNCSSQHLGGGLGFLASEQGGGAGSPDGTTATDGSFTDAWASNDYFHGAGAGAGEKSPQGYQQERSIEQFVLDLDGRRGYAGGGGSGTGGEVESGGG------GQTTITPFQRWKRERGIVSPGVAEMFGGQGCCS 331
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig898.17069.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.230e-15383.08protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig898contigE_fasciculatus_S2_contig898:6225..9633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.8
Seed ortholog evalue1.5e-06
Seed eggNOG ortholog4792.ETI30723
Model size1366
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2D3W4@1,2SSZD@2759,3QI79@4776
Cds size1146
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig898.17069.1prot_E_fasciculatus_S2_contig898.17069.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig898 6225..9413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842550.5889106-CDS-E_fasciculatus_S2_contig898:6224..62841696842550.5889106-CDS-E_fasciculatus_S2_contig898:6224..6284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 6225..6284 +
1696842550.6102862-CDS-E_fasciculatus_S2_contig898:6645..67081696842550.6102862-CDS-E_fasciculatus_S2_contig898:6645..6708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 6646..6708 +
1696842550.6224473-CDS-E_fasciculatus_S2_contig898:7187..72211696842550.6224473-CDS-E_fasciculatus_S2_contig898:7187..7221Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 7188..7221 +
1696842550.638528-CDS-E_fasciculatus_S2_contig898:7636..77041696842550.638528-CDS-E_fasciculatus_S2_contig898:7636..7704Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 7637..7704 +
1696842550.6505876-CDS-E_fasciculatus_S2_contig898:8332..84401696842550.6505876-CDS-E_fasciculatus_S2_contig898:8332..8440Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 8333..8440 +
1696842550.6597102-CDS-E_fasciculatus_S2_contig898:8600..94131696842550.6597102-CDS-E_fasciculatus_S2_contig898:8600..9413Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig898 8601..9413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842550.6696024-UTR-E_fasciculatus_S2_contig898:9413..96331696842550.6696024-UTR-E_fasciculatus_S2_contig898:9413..9633Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig898 9414..9633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig898.17069.1

>prot_E_fasciculatus_S2_contig898.17069.1 ID=prot_E_fasciculatus_S2_contig898.17069.1|Name=mRNA_E_fasciculatus_S2_contig898.17069.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=382bp
MDQSFKLSDGYRNWAAFVEEFRRIEESLQESKQLERVLVNQCNQLKSELV
VSGNKLHTVMSVRAEDERTMALLRKECDQSVVTSMEAKIKEKQAMTLVSG
LQADIEALQAQVGVLQSALWLEKERASAAVRASRGATGPATRGGTSKAAL
TMTSSTSTASAAAAEAAAVASGVLANSSSRGGGGGFGSSGKRRNGVPSKR
IGERGGPRRPATAPAQDTQGLRGKLPHCNAGGLYGRSKPWEGGVGGNCSS
QHLDGGRGFLASERGAGAGSPDGTTATDGSFADPWASNDYFHGGSGGGGK
KSPQGHQQERSVEKFVLDLDGRRGYAGGGGGDGGGGGGPGSEVESSGGGQ
TTITPFQRWKRERGIVSPGVAEMFGGQGCCS*
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mRNA from alignment at E_fasciculatus_S2_contig898:6225..9633+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig898.17069.1 ID=mRNA_E_fasciculatus_S2_contig898.17069.1|Name=mRNA_E_fasciculatus_S2_contig898.17069.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3409bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig898:6225..9633+ (Ectocarpus fasciculatus EfasUO2)
ATGGATCAATCGTTCAAACTCTCCGACGGCTACCGAAATTGGGCTGCATT
CGTCGAAGAGGTATGCATACCAATCTGGTGTCAGCATGTTGTTCACAACA
GCAGCACATTTTGGACAGTGACAAGTTGATACTCCGATGACCTGTCAAAT
TACTTCACCAAAGCTGTTTGCGTCCCATGTCAGTAGTCTATTGTAGATAT
CAAAAAATTGTCGAAATTCCATGTGTCCATTTTCACTGGTGGTACAATAT
GCACTGCTGTAGGCTACGAAATATTGCAACAGCAGCTGTAGTCTGAAGTC
CAAAACCACCTTTGTGTTGGTTAAGCAACACGTTGGTAGACTGTGTGCTG
AACTTCCACCCTGACTTGTTCTGTGATGGCGACTGTATCAATTGACTGCA
TGCACATTTGTGTTGCCACAGTTTCGTAGAATAGAAGAATCGCTGCAGGA
GTCCAAGCAATTGGAGCGGGTCCTCGTGAACCAAGTGAGTGAAAGCTTAA
CTCGGGGTTTGGGCATCATTGCCGTCGTGTGTTAGTAGTTAGTAGTGTGT
CTTGCTGTTACTGGGTTCATGTTTGTGTGCCTCCACAATGAATGCCATCC
TAGCCATCTCAGTGGGATGACAATCACCCAATGTCAACCACCCTACTACA
GAACGGTCTTCCCCTTAAGATTCCAATGGGCAAAGGACAAATTGCGATCA
CCGCAATAGCTGGCCGAAAAGATCGCCAAGAAACGAATGGGCGAGGGGAT
CCATGCCATCCCTGGGACAAGAGCTGGAAGTAGAAACGCCCCACAGTCCA
TACAATACGCTCGGCACGGCTTTTCTCTTGGAGAAAAGGAACAATATTTC
ACCATAACATACTTCTAATGGCTCGTTTCCTACCTCCCCCTGCTTGAGCC
TCTAGCCTGAGAAAGCCCCTTTGTTCCGTTTGACGTTGTCGGCATCTTTG
CGGCGGTCTACAGTGCAATCAGCTAAAGTCCGAGCTTGTCGTCAGCGGTG
AGTGCCCGAACACACGGCCCTTCGCTACTTGTTTTTCTTTTGCTCCGCTC
ACAACGAAGGTAGCATTAATCCACCATCTGAGGACATGACCGTGATACAT
GACAGGGATGATCTTCAAGGCGAAGGCTATCCCACAACGAGTTTGGCGAG
CGAAGGCAATTTGATCGTGGCACGGCCGGCTTCATCGCTGGTAGTGTTTG
GTGGTGCTGTTTGCTTGGTGGTTGTGAGCCTGGTGGTGGTTTTCTGTGCA
CGTGGTTTTGACCTAGACAATGGCGGAAAGGGGAGTCTGGACTTCGCTGT
ACCTTCCCGCCCCTCATTGTATAGATAGCGAGATATATGTTCGCATGATA
ACTCGTCGTGAATTTTGATCTCTGAGCAATCTACCCTCATTCCGCTGGAC
GTCGTTGGAAAGGCAACAAGCTACACACGGTGATGAGCGTGCGCGCAGAG
GACGAAAGGACCATGGCTCTGCTGCGGAAGGTATACCGTTAACTCACCAA
ATAGCTGGGAGGAGAAACAGGATTAACTAATGTATGTATGCGTGCTTGCG
GCCTAGATCATTCTGCTGGGGTAAGCTCAACGCAACATTTGGATTTGGAT
TAATGAGTGCTGAGAATGCCCCTTAATCAAGCCCCGCAGGACCCACGAGC
GCATCTCGACCAACGCAGCCCGCTCGAAACTCATTTTGTGGGGGCTAGGT
TTAACTCCCCCGTAAGCAATGGTCCGAGCGGTAACAGGATTTCTACGAAA
ACACGATAGAGTCGAGTCATGACAAACCAAACAGGAATCCTATGCTTCGT
AAAATTCCGAGGGGAAATTCCGAGGGTGTTGGGGTCACACCTACGAGATG
TCCCTTGGGCTCTACTAGGCAGCCAATTGTATGTCCCTATTGCAGGTGAA
TGGGCCCCACTCTGTTCTAAGACGACCACAATTTGCAGCCAGAAAATAAC
GCTATATTCCACAACAGCAGGACACAATCGGAAGATTATGTGGAACCGAA
CCTTCCTCTTGTGGAAAGTGAGACCAGCGACATGACGTAACGACGCAATG
CTAGTAGGCGTTTCCCGTCATGCTGTCCGGTAATTGTTTTGGGCCACGCG
CCCCACAGGAATGCGACCAATCGGTGGTTACCTCGATGGAGGCGAAGATC
AAGGAAAAGCAGGCCATGACGCTCGTTTCGGGGTTACAGGCGGATATCGA
GGCCCTGCAAGCTCAGGTGATCCGACCGGCTGACTCGAGCTCAGGAAACC
GAAACCGTCACATTCCCACGAAAACCTACGACGGGATCCACCCTGCAGAC
AAACACATGAAGTATCAACGCACCTCCTGCTCGCAACTACGTCTACATGA
TCCGTCGTTGTACACTGCCGCAACAGGTTGGGGTCCTCCAGAGCGCTCTT
TGGTTAGAAAAGGAGCGAGCTAGCGCGGCTGTCAGAGCCAGCAGGGGCGC
GACCGGCCCAGCCACAAGAGGCGGGACGTCGAAGGCGGCACTAACGATGA
CGAGCTCTACCTCGACGGCGTCAGCAGCAGCGGCAGAGGCGGCGGCGGTC
GCATCGGGAGTGCTCGCGAACAGCTCAAGCCGTGGAGGTGGGGGAGGATT
TGGCTCATCAGGGAAACGAAGAAACGGTGTCCCCTCGAAGCGGATAGGGG
AACGAGGCGGTCCTCGTCGGCCGGCAACAGCACCAGCGCAAGACACACAA
GGTCTTCGAGGGAAACTCCCGCACTGCAACGCCGGCGGTCTCTACGGCAG
GAGCAAACCCTGGGAGGGAGGGGTGGGAGGTAACTGCAGCAGCCAGCATC
TCGACGGCGGCCGAGGCTTTCTCGCCAGCGAGCGGGGGGCTGGGGCGGGT
AGCCCAGACGGGACAACGGCGACTGACGGGTCGTTCGCTGACCCCTGGGC
GTCCAACGACTACTTCCACGGCGGCAGCGGCGGCGGCGGTAAAAAGAGCC
CACAAGGCCATCAACAGGAGCGGAGTGTAGAAAAGTTCGTGCTTGACCTC
GACGGTCGCAGAGGATATGCTGGTGGTGGTGGTGGTGATGGTGGTGGTGG
TGGTGGACCCGGTAGCGAGGTAGAAAGCAGTGGTGGAGGCCAAACCACCA
TCACCCCGTTCCAGAGATGGAAAAGAGAGCGAGGAATTGTCTCGCCGGGA
GTTGCCGAGATGTTTGGGGGGCAAGGGTGTTGTTCCTGAGCGCAGAAGCT
GGCGCGGATACGGTGTCTCGCTCTCGATTGTTGAAAGTCTCGTGTGTAGA
GCATGAGGAGGATTGCCGGTGCGAGAAGCAACCCTCCAAAAGGCCGTCTA
TCTCTTCCTCTATGTGTACGTCGTACGTAGCCCCAGCAACATATTGTTTC
AAGCGAACAAGACCATCAACAGCAACACAAAGCCAAGTGTGCACGTGTTG
ATTTTCCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig898:6225..9633+

>mRNA_E_fasciculatus_S2_contig898.17069.1 ID=mRNA_E_fasciculatus_S2_contig898.17069.1|Name=mRNA_E_fasciculatus_S2_contig898.17069.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1146bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig898:6225..9633+ (Ectocarpus fasciculatus EfasUO2)
ATGGATCAATCGTTCAAACTCTCCGACGGCTACCGAAATTGGGCTGCATT
CGTCGAAGAGTTTCGTAGAATAGAAGAATCGCTGCAGGAGTCCAAGCAAT
TGGAGCGGGTCCTCGTGAACCAATGCAATCAGCTAAAGTCCGAGCTTGTC
GTCAGCGGCAACAAGCTACACACGGTGATGAGCGTGCGCGCAGAGGACGA
AAGGACCATGGCTCTGCTGCGGAAGGAATGCGACCAATCGGTGGTTACCT
CGATGGAGGCGAAGATCAAGGAAAAGCAGGCCATGACGCTCGTTTCGGGG
TTACAGGCGGATATCGAGGCCCTGCAAGCTCAGGTTGGGGTCCTCCAGAG
CGCTCTTTGGTTAGAAAAGGAGCGAGCTAGCGCGGCTGTCAGAGCCAGCA
GGGGCGCGACCGGCCCAGCCACAAGAGGCGGGACGTCGAAGGCGGCACTA
ACGATGACGAGCTCTACCTCGACGGCGTCAGCAGCAGCGGCAGAGGCGGC
GGCGGTCGCATCGGGAGTGCTCGCGAACAGCTCAAGCCGTGGAGGTGGGG
GAGGATTTGGCTCATCAGGGAAACGAAGAAACGGTGTCCCCTCGAAGCGG
ATAGGGGAACGAGGCGGTCCTCGTCGGCCGGCAACAGCACCAGCGCAAGA
CACACAAGGTCTTCGAGGGAAACTCCCGCACTGCAACGCCGGCGGTCTCT
ACGGCAGGAGCAAACCCTGGGAGGGAGGGGTGGGAGGTAACTGCAGCAGC
CAGCATCTCGACGGCGGCCGAGGCTTTCTCGCCAGCGAGCGGGGGGCTGG
GGCGGGTAGCCCAGACGGGACAACGGCGACTGACGGGTCGTTCGCTGACC
CCTGGGCGTCCAACGACTACTTCCACGGCGGCAGCGGCGGCGGCGGTAAA
AAGAGCCCACAAGGCCATCAACAGGAGCGGAGTGTAGAAAAGTTCGTGCT
TGACCTCGACGGTCGCAGAGGATATGCTGGTGGTGGTGGTGGTGATGGTG
GTGGTGGTGGTGGACCCGGTAGCGAGGTAGAAAGCAGTGGTGGAGGCCAA
ACCACCATCACCCCGTTCCAGAGATGGAAAAGAGAGCGAGGAATTGTCTC
GCCGGGAGTTGCCGAGATGTTTGGGGGGCAAGGGTGTTGTTCCTGA
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