mRNA_E_fasciculatus_S2_contig8961.17053.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8961.17053.1
Unique NamemRNA_E_fasciculatus_S2_contig8961.17053.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8961.17053.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8961contigE_fasciculatus_S2_contig8961:185..1137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842549.102866-CDS-E_fasciculatus_S2_contig8961:184..2611696842549.102866-CDS-E_fasciculatus_S2_contig8961:184..261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8961 185..261 -
1696842549.114719-CDS-E_fasciculatus_S2_contig8961:1082..11371696842549.114719-CDS-E_fasciculatus_S2_contig8961:1082..1137Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8961 1083..1137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8961.17053.1prot_E_fasciculatus_S2_contig8961.17053.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8961 185..1137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8961.17053.1

>prot_E_fasciculatus_S2_contig8961.17053.1 ID=prot_E_fasciculatus_S2_contig8961.17053.1|Name=mRNA_E_fasciculatus_S2_contig8961.17053.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=44bp
PKRSAPTGITACTYLVRHALNLGSAKTGSDTSPCTNIVLKCLFC
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mRNA from alignment at E_fasciculatus_S2_contig8961:185..1137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8961.17053.1 ID=mRNA_E_fasciculatus_S2_contig8961.17053.1|Name=mRNA_E_fasciculatus_S2_contig8961.17053.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=953bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8961:185..1137- (Ectocarpus fasciculatus EfasUO2)
CCGAAACGGTCGGCGCCCACTGGCATCACTGCTTGCACGTATCTGGTGCG
GCACGGTCATGAACGTCTGGTTTGCTCAATCGCTTGGGCTGCTGGTGAGA
AACATGCCACTAAATCAGAACATGGTCGATTTGCGAGCTAAACGATCATT
TGACGCTACGCAGCACTCCCCACTCTTACCGTTGATAATGGCTCCTGCTG
CCCAGACCCTCGTTCCTCCAACGTGGCAACGAAGACTCCAGGCCGGGACT
GTCGAGTAATGGACGACCAACGTGGCCGCTGTTGTGTGAAGGGGGGAAAG
TTATCAAGAGAGTGTGCGTCTGCGGAGCTTGTGAGGGATGGCCCCGTCGG
GGGGACTGGGCTCCGAGAAGATCTGCTGCCAACTCTACACGCGAGACGTT
TAACGATCGAAAATGAGACTGCACGTGGAGGTCACATTTTGAAGGACAAG
GTGCGGGTGTTCTTAACTTTTTTTGGCATGGGGATGCAAGACCGGGTGAG
ATACTGCTGTAGTGTGCAATGCTGTACGTGCATGGCTTCGTTATTTCATT
AGCATCGTATAGACTTCACCTGCGTGGCCTGCTTAACCCTGCCCCCTGTG
TTATTATTTCGCGAGATGTTGGGCAACGGTGCTTACAGGACGCCCGTGGA
CTCATGCCGCACATTTCAATCCGGCGTGGAAATGTCAGCGGCACGCGAGC
TCACGATCCATCCTCTCTCCCTTTGTTGTAGGCTTTGCAAGTGAGCACTG
TCTGTGGCTTCTGTGGTGGGGTCGGGTGCCGCAGCATCATCCATGATCCA
CCAGGCAAGGCCAGGCCCCTGGTGCACTCGACCTGTCCATCAGCGCCTCG
GAGCGACGCACGCCAGGAAGCCGTAGCTCTGAACCTGGGCAGTGCGAAGA
CAGGCTCAGATACCTCACCGTGCACCAACATCGTCTTGAAGTGCCTCTTC
TGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8961:185..1137-

>mRNA_E_fasciculatus_S2_contig8961.17053.1 ID=mRNA_E_fasciculatus_S2_contig8961.17053.1|Name=mRNA_E_fasciculatus_S2_contig8961.17053.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=132bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8961:185..1137- (Ectocarpus fasciculatus EfasUO2)
CCGAAACGGTCGGCGCCCACTGGCATCACTGCTTGCACGTATCTGGTGCG
GCACGCTCTGAACCTGGGCAGTGCGAAGACAGGCTCAGATACCTCACCGT
GCACCAACATCGTCTTGAAGTGCCTCTTCTGC
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