mRNA_E_fasciculatus_S2_contig896.17052.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig896.17052.1
Unique NamemRNA_E_fasciculatus_S2_contig896.17052.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCK6_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 1.530e-110
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            QLFNSSPDEASYYRGILCREN ASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS
Sbjct:  614 QLFNSSPDEASYYRGILCRENVASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 783
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V562_9STRA)

HSP 1 Score: 275 bits (704), Expect = 5.090e-92
Identity = 133/170 (78.24%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            Q  N SPDE +YYR +L RE  ++SLVM+QPSLLSYSFQGPP P +LDA+SVR DT+LLLDTFFHV++FHGETI AWREQGYQDHEEHA FR LL APQADAQ+IM SR PVPRYIVCDQHKSE RFL+++LNPSVTHNT DGS GQ IFTDDVSLRVFMEHLMKL+ QS
Sbjct:   45 QQINYSPDENAYYRSMLTRECCSNSLVMIQPSLLSYSFQGPPQPVLLDASSVRQDTVLLLDTFFHVLVFHGETIAAWREQGYQDHEEHANFRNLLLAPQADAQVIMDSRFPVPRYIVCDQHKSEGRFLMARLNPSVTHNTNDGSAGQTIFTDDVSLRVFMEHLMKLAVQS 214
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BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH11_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.510e-90
Identity = 131/170 (77.06%), Postives = 146/170 (85.88%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            QLFN+SPDE++YYR +L REN  +SLVM+QPSLLSYSFQG P P +LDAASV PDTILLLDTFFHVV+FHGE I  WR+QGYQDHEEH  F+ LL APQ DAQ IM  R PVPRYIVCDQHKSEARF+I+KLNPS+THNT DGS G+ IFTDDVSLRVFMEHLMKL+ QS
Sbjct:   88 QLFNTSPDESAYYRSVLVRENTTNSLVMIQPSLLSYSFQGTPSPVLLDAASVSPDTILLLDTFFHVVVFHGEKIAMWRDQGYQDHEEHIHFKNLLIAPQTDAQRIMDQRFPVPRYIVCDQHKSEARFVIAKLNPSLTHNTNDGSAGERIFTDDVSLRVFMEHLMKLAVQS 257
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSI2_9STRA)

HSP 1 Score: 275 bits (704), Expect = 5.440e-89
Identity = 134/170 (78.82%), Postives = 149/170 (87.65%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            QLFNSSPDEASYYR IL REN ++SLVM+QP+LLSYSF GPP P +LD+ SVRPDTILLLDTFFHVV+FHGETI AWRE  Y + EEHA+FRQLLEAPQ DAQ+IM SR PVPRYIVCDQHKSEARFL++KLNPSVTH+T +G  G  +FTDDVSLRVFMEHLMKLS QS
Sbjct:  265 QLFNSSPDEASYYRYILSRENTSNSLVMIQPTLLSYSFNGPPQPTLLDSQSVRPDTILLLDTFFHVVVFHGETIAAWREMKYHEQEEHASFRQLLEAPQDDAQLIMDSRFPVPRYIVCDQHKSEARFLMAKLNPSVTHHTGEGGGGAQVFTDDVSLRVFMEHLMKLSVQS 434
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I581_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.150e-88
Identity = 134/171 (78.36%), Postives = 149/171 (87.13%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQA-IFTDDVSLRVFMEHLMKLSTQS 510
            QLFNSSPDEA+YYR +L REN  +SLVM+QP+LLSYSF GPP PA+LDA SVRPDTILLLDTFFHVV+FHGETI AWREQ Y + EEHAAFR LLEAPQADAQ+IM +R PVPRYIVCDQHKSEARFL++KLNPS THNT +G  G   +FTDDVSLRVFMEHLMKL+ QS
Sbjct:  207 QLFNSSPDEAAYYRYVLTRENTTNSLVMIQPTLLSYSFNGPPQPALLDAQSVRPDTILLLDTFFHVVVFHGETIAAWREQKYHEQEEHAAFRDLLEAPQADAQMIMDARFPVPRYIVCDQHKSEARFLMAKLNPSCTHNTPEGGGGGTQVFTDDVSLRVFMEHLMKLAVQS 377
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TWJ3_SYMMI)

HSP 1 Score: 260 bits (664), Expect = 1.260e-85
Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            Q FNSSPDE + YR IL RE  ++SL+MLQPSLLSYSFQGPP P +LDAASVRPDTILLLDTFFHVV+F GETI AW++QGYQ  EEH  F+ LLEAPQ DAQ+IM +R PVPRYIV DQHKSEARFL++ LNPS+TH+++DG  GQ IFTDDVSLRVFMEHLMKLS QS
Sbjct:   66 QNFNSSPDEQAVYRHILTRECTSNSLIMLQPSLLSYSFQGPPQPVLLDAASVRPDTILLLDTFFHVVVFLGETIAAWKQQGYQHQEEHINFKNLLEAPQNDAQMIMSNRFPVPRYIVADQHKSEARFLLAMLNPSITHHSSDGGAGQQIFTDDVSLRVFMEHLMKLSVQS 235
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLG5_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.360e-85
Identity = 130/170 (76.47%), Postives = 145/170 (85.29%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            Q FNSSPDE + YR IL REN  +SL+MLQPSLLSYSF GPP P +LDA SVRPDTILLLDTFFHV++FHGETI AW++QGYQ  EEH  FR LLEAPQ DAQ+IM +R PVPRYIVCDQHKSEARFL++ LNPSVTHN+ D + GQAIFTDDVSLRVFMEHLMKL+ QS
Sbjct:  361 QSFNSSPDEQAVYRHILTRENTTNSLIMLQPSLLSYSFHGPPQPVLLDATSVRPDTILLLDTFFHVIVFHGETIAAWKQQGYQHQEEHVNFRNLLEAPQNDAQMIMNNRFPVPRYIVCDQHKSEARFLLAMLNPSVTHNSADSAAGQAIFTDDVSLRVFMEHLMKLAVQS 530
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTH4_9STRA)

HSP 1 Score: 275 bits (704), Expect = 4.440e-85
Identity = 134/170 (78.82%), Postives = 149/170 (87.65%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            QLFNSSPDEASYYR IL REN ++SLVM+QP+LLSYSF GPP P +LD+ SVRPDTILLLDTFFHVV+FHGETI AWRE  Y + EEHA+FRQLLEAPQ DAQ+IM SR PVPRYIVCDQHKSEARFL++KLNPSVTH+T +G  G  +FTDDVSLRVFMEHLMKLS QS
Sbjct:  653 QLFNSSPDEASYYRYILSRENTSNSLVMIQPTLLSYSFNGPPQPTLLDSQSVRPDTILLLDTFFHVVVFHGETIAAWREMKYHEQEEHASFRQLLEAPQDDAQLIMDSRFPVPRYIVCDQHKSEARFLMAKLNPSVTHHTGEGGGGAQVFTDDVSLRVFMEHLMKLSVQS 822
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZT0_9ARCH)

HSP 1 Score: 258 bits (659), Expect = 4.790e-84
Identity = 125/171 (73.10%), Postives = 145/171 (84.80%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGS-QGQAIFTDDVSLRVFMEHLMKLSTQS 510
            Q FNSSPDE ++YR +LCRE+ ++SL+MLQPSLLSYSFQG P P +LDA SVRPDTILLLD+FFH++IFHGETI AW+ QGY   EEHA FR LL AP  DAQ I++SR P+PRYI+CDQHKSEARFL+S LNPSVTHN++DG   GQ IFTDDVSLRVFMEHLMKL+ QS
Sbjct:  123 QSFNSSPDEQAFYRHVLCRESTSNSLIMLQPSLLSYSFQGVPQPVLLDATSVRPDTILLLDSFFHIIIFHGETIAAWKAQGYHMMEEHANFRNLLNAPLQDAQAILKSRFPIPRYILCDQHKSEARFLLSMLNPSVTHNSSDGGGSGQMIFTDDVSLRVFMEHLMKLAVQS 293
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Match: Protein (transport protein SEC23 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YQE8_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.750e-83
Identity = 129/170 (75.88%), Postives = 146/170 (85.88%), Query Frame = 1 
Query:    1 QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAASVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQADAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIFTDDVSLRVFMEHLMKLSTQS 510
            QLFN+SPDE+SYYR +L REN  +SLVM+QPSLLSYSF GPP P +LDA SV PDTILLLDTFFHVV+FHGE +  WR+QGYQD+ EH  F+ LL APQA+AQ IM+ R PVPRYIVCDQHKSEARF+I+KLNPSVTHNT DGS G+ IFTDDVSLRVFMEHLMKL+ QS
Sbjct:  613 QLFNTSPDESSYYRSVLMRENTTNSLVMIQPSLLSYSFNGPPTPVLLDAESVNPDTILLLDTFFHVVVFHGEKMAMWRDQGYQDNPEHVHFKNLLIAPQAEAQRIMEQRFPVPRYIVCDQHKSEARFVIAKLNPSVTHNTNDGSAGERIFTDDVSLRVFMEHLMKLAVQS 782
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig896.17052.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein1.530e-11099.41transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2... [more]
Protein5.090e-9278.24transport protein SEC23 n=1 Tax=Fibrocapsa japonic... [more]
Protein2.510e-9077.06transport protein SEC23 n=1 Tax=Florenciella parvu... [more]
Protein5.440e-8978.82transport protein SEC23 n=1 Tax=Leptocylindrus dan... [more]
Protein1.150e-8878.36transport protein SEC23 n=1 Tax=Helicotheca tamesi... [more]
Protein1.260e-8575.29transport protein SEC23 n=1 Tax=Symbiodinium micro... [more]
Protein1.360e-8576.47transport protein SEC23 n=1 Tax=Spumella elongata ... [more]
Protein4.440e-8578.82transport protein SEC23 n=1 Tax=Leptocylindrus dan... [more]
Uncharacterized4.790e-8473.10protein (Fragment) n=1 Tax=archaeon TaxID=1906665 ... [more]
Protein1.750e-8375.88transport protein SEC23 n=1 Tax=Dictyocha speculum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig896contigE_fasciculatus_S2_contig896:23509..26094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score343.2
Seed ortholog evalue7e-92
Seed eggNOG ortholog2880.D8LCK6
Preferred nameSEC23A
Model size513
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001501,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003330,GO:0003331,GO:0003400,GO:0003674,GO:0005096,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007163,GO:0007275,GO:0007389,GO:0007399,GO:0007424,GO:0007517,GO:0007591,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008360,GO:0008363,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016203,GO:0016236,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019898,GO:0019941,GO:0022008,GO:0022407,GO:0022409,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030155,GO:0030163,GO:0030198,GO:0030234,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030695,GO:0031090,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033333,GO:0033334,GO:0033339,GO:0033554,GO:0034394,GO:0034613,GO:0034622,GO:0034976,GO:0035017,GO:0035107,GO:0035138,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035293,GO:0035295,GO:0035459,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048471,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048699,GO:0048701,GO:0048702,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060538,GO:0060541,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061061,GO:0061448,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071711,GO:0071840,GO:0072657,GO:0072659,GO:0090110,GO:0090113,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903053,GO:1903055,GO:1903530,GO:1903532,GO:1904888,GO:1990778,GO:2000026
Exons4
EggNOG free text desc.COPII-coated vesicle budding
EggNOG OGsCOG5047@1,KOG1986@2759
Cds size513
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842549.040301-CDS-E_fasciculatus_S2_contig896:23508..236801696842549.040301-CDS-E_fasciculatus_S2_contig896:23508..23680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig896 23509..23680 -
1696842549.0547562-CDS-E_fasciculatus_S2_contig896:24559..246581696842549.0547562-CDS-E_fasciculatus_S2_contig896:24559..24658Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig896 24560..24658 -
1696842549.064026-CDS-E_fasciculatus_S2_contig896:25420..255451696842549.064026-CDS-E_fasciculatus_S2_contig896:25420..25545Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig896 25421..25545 -
1696842549.0729191-CDS-E_fasciculatus_S2_contig896:25977..260941696842549.0729191-CDS-E_fasciculatus_S2_contig896:25977..26094Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig896 25978..26094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig896.17052.1prot_E_fasciculatus_S2_contig896.17052.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig896 23509..26094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig896.17052.1

>prot_E_fasciculatus_S2_contig896.17052.1 ID=prot_E_fasciculatus_S2_contig896.17052.1|Name=mRNA_E_fasciculatus_S2_contig896.17052.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp
QLFNSSPDEASYYRGILCRENAASSLVMLQPSLLSYSFQGPPVPAMLDAA
SVRPDTILLLDTFFHVVIFHGETIGAWREQGYQDHEEHAAFRQLLEAPQA
DAQIIMQSRCPVPRYIVCDQHKSEARFLISKLNPSVTHNTTDGSQGQAIF
TDDVSLRVFMEHLMKLSTQS*
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mRNA from alignment at E_fasciculatus_S2_contig896:23509..26094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig896.17052.1 ID=mRNA_E_fasciculatus_S2_contig896.17052.1|Name=mRNA_E_fasciculatus_S2_contig896.17052.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2586bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig896:23509..26094- (Ectocarpus fasciculatus EfasUO2)
CAGTTGTTCAACTCGTCGCCGGACGAAGCTAGCTACTACAGGGGAATCCT
CTGCCGAGAGAACGCGGCGTCGTCTCTCGTGATGCTGCAGCCCAGCCTCC
TCTCCTACTCGTTCCAGGTATGAATACACACATCCATGGTGTTGTCCAGA
TAATCAATGGGGTTGCAATGTGATTTGGCGTTTCAACCGATGGTCTGGGG
TTCGCGTCCGGCATGGGCGCGATACGTAGCGACGGCATGCCGCCAGGCGG
GCGAAGTTTTGGGACTCATACTGATACCTGCTAGATATACATTTTTTTTA
TAGCTCCGACGGGTGGGCACTCGGTCCTCAAACCGTGTGTACTCCTTCAT
GTACATGCGGTTGGGGACATGGAAAAGGGGATCGGCGGTGACGAATGGTG
TGTGGCAGGGGCTGTTGCGACATCGCAGAAATATGATGGTGTTTTTTTTT
TACTTTGGATGTTGCTGTCTGTCGTTGGCATCGCGATCGAGTTACAGTGG
CTGACCCCCTCGTATGTTTTCCTGTGACCCCCCCCCCCCTCCCCCCAAGG
GCCCGCCGGTCCCCGCGATGCTGGACGCGGCGTCGGTACGACCGGACACG
ATCCTGCTGCTGGACACGTTCTTCCACGTCGTTATCTTCCACGGAGAGAC
CATCGGGGCATGGAGGGAGCAAGGGTGGGTGTTCATTGGAATCTCGCGTG
CTCAGGCAAATAGGCCTGGCGTATTATGTAGAGGCTCGTATGGATAAAAC
ACTAGACTTGCCGTTTTGTGCAAGTCTCGCATAGATCGACGAGAAACGTG
GCTCGCGTTTTCTTTTCAAAGTCTCGCGTGGATGAAACAAACGGCTTCGA
GTCTCGCGGTTTGCTTCGAGTCTCGCGTGCTTAAGCACTAGACTTGGCGT
TTGTTTGGAATCTCGCATGGGTGAACAAAATGCTGATGGTTTTATTGCTG
TCTCGCATATAGCTACACGGAAGACTTCACGCTTTCTTAGGAGTCTCTAT
GCATTAGCAACAAACTTGGCGTTTCTTGAAGTCTCGCATCCGTACACAAG
ATACTTGTCGTGTGTCTATTGTATCTATCGCTCTGGCGCTGAGGGGACCA
TGTGGAGCTCGTTGTGGTCGAAACGGCTAAACGTAGACATGACCCATGTC
GGAAAAAGTGTAGAGATTGATCAATCAGAACAAAACCCGAGTGTTGTGCG
TGCCAGTGCTGCGGGTACTCCTGTGTCGAGGGTCCCCAGCAAGTTAGCGT
GCCGTAAAACCCACGTCGTCCCGCGTGCTCACCCGCGAACGCACGCCCAG
GCAGAATCGATCCCTCTGGCATCTCTGCTGCGAGTCCCCCCGACATGTTG
TACTGCTCACCACTCACTCCGCCCTTCCTTGCGAATCGTGCCGTTTCGGT
GATGCTCGATGATATTGACGGTCTATTGCATCTCAGGTACCAAGACCACG
AAGAACATGCGGCTTTCCGGCAGCTGCTGGAGGCGCCCCAGGCGGACGCG
CAGATCATCATGCAGAGCCGCTGCCCAGTGCCAAGGTGTGTGTGTTTTGG
TTTTATTAGCATCGACCGCGCTAGCCGGCTAGCCAATGAAAATACGTCTG
TCTTTGAAGCGGGATAAAAACCACCAACACTCTAGGCTATGCGTGTGTTT
GTGTGTTTCAACATCAACCGCGCTGTTGCCGGCTGGCCAATGGAAACATG
TGTGGTGTGTACGTGTGTCTTCCGGCCATGCGAACAAGGGTCAAGGGACA
CCTGCTTTTGTTTTTTTTTGTGTGAGGCTGGCGTGTGGGTGGTTGAAAAT
GTCGGGCGGTTTTCGCGTTTACTGTGGCGTTGATGGTTAACGTACATGTC
GGAGGGAGGAGGGGGGGGGCTTTCGGATCCGGCAGGATCTCGAGAAAGTC
AGCGCCGACGGCATTGTATTTTCCCTCCCGCCTCGCCTTACCCCAGAGAC
AGCCGTATCTGCATCCATCACGTGTCACTTGGTACACCTCGATTCACAAG
CTCCACTTGCGTCCCTTTTCTCTGCGTGTGCTGTCTCCGTTACTGCCAAG
GCGCGCGTGTATCTGTAATCGGCACGCCAGCGAGCTCCCTGCCGTCTGTC
CCCGCCGCCTCGGTTGTATTCATTTCTTTGGTGTTGTTGTTGTCACGGCT
CGCGTTGGCGCCCGTACAGAAACGTGTTCGTTCGCAGGCGGTCTCATGCT
CGCCCGGTGTCGGCACGATCTAACGCGCTTATGTATCCATTTTTTGTGTT
TTTATCTCTTGTCTCTCTTACTTACTGTCTTGTCTGTCGCTTTTGATACT
TTTTACAACAACGGACTTGTCACATCCTTTTTTTCCCTGTTGCGGCGCAT
GATACGGCGCGATGCGCCGCGCACTCTCGTTTTCGTTCGCTCGCGCGCGC
GCGCGCCCACACAGGTACATCGTGTGCGATCAGCACAAGTCGGAGGCTCG
CTTCCTCATCTCCAAGCTCAACCCTTCGGTGACTCACAACACGACGGACG
GCTCCCAAGGGCAGGCCATCTTCACCGACGATGTCAGTCTTCGCGTCTTC
ATGGAGCACCTCATGAAGCTGTCCACTCAATCGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig896:23509..26094-

>mRNA_E_fasciculatus_S2_contig896.17052.1 ID=mRNA_E_fasciculatus_S2_contig896.17052.1|Name=mRNA_E_fasciculatus_S2_contig896.17052.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig896:23509..26094- (Ectocarpus fasciculatus EfasUO2)
CAGTTGTTCAACTCGTCGCCGGACGAAGCTAGCTACTACAGGGGAATCCT
CTGCCGAGAGAACGCGGCGTCGTCTCTCGTGATGCTGCAGCCCAGCCTCC
TCTCCTACTCGTTCCAGGGCCCGCCGGTCCCCGCGATGCTGGACGCGGCG
TCGGTACGACCGGACACGATCCTGCTGCTGGACACGTTCTTCCACGTCGT
TATCTTCCACGGAGAGACCATCGGGGCATGGAGGGAGCAAGGGTACCAAG
ACCACGAAGAACATGCGGCTTTCCGGCAGCTGCTGGAGGCGCCCCAGGCG
GACGCGCAGATCATCATGCAGAGCCGCTGCCCAGTGCCAAGGTACATCGT
GTGCGATCAGCACAAGTCGGAGGCTCGCTTCCTCATCTCCAAGCTCAACC
CTTCGGTGACTCACAACACGACGGACGGCTCCCAAGGGCAGGCCATCTTC
ACCGACGATGTCAGTCTTCGCGTCTTCATGGAGCACCTCATGAAGCTGTC
CACTCAATCGTAG
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