mRNA_E_fasciculatus_S2_contig8956.17048.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8956.17048.1
Unique NamemRNA_E_fasciculatus_S2_contig8956.17048.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8956.17048.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G4_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.270e-76
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 2 
Query:  224 VWVCWSTVVAKLEAKEMKKEMDAAERAFHNLGMKPTPENVEAEATRKAAVSFIIKRIQVDREENPEEAGGAAVVSHKVSMLQMAADEDGMQLLVAKPEGVNDTFSRAMMKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQ 676
            VWV WS VVAKL+AKEMK EMDAAERAFHNLGMKPTPENV+AEATRKAAVSFIIKRIQVDRE++PEEAGG AV SHKVSMLQMAADEDGMQLL+ KPEGVNDTFSRAM KRASIQEVAEVM SLRKSLGDVNTAAQAAAASL GATGTVEQ
Sbjct:  230 VWVSWSAVVAKLDAKEMKNEMDAAERAFHNLGMKPTPENVQAEATRKAAVSFIIKRIQVDREDSPEEAGGPAV-SHKVSMLQMAADEDGMQLLMEKPEGVNDTFSRAMSKRASIQEVAEVMASLRKSLGDVNTAAQAAAASLDGATGTVEQ 379
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BLAST of mRNA_E_fasciculatus_S2_contig8956.17048.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ93_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.560e-72
Identity = 136/149 (91.28%), Postives = 140/149 (93.96%), Query Frame = 2 
Query:  281 EMDAAERAFHNLGMKPTPENVEAEATRKAAVSFIIKRIQVDREENPEEAGGAAVVSHKVSMLQMAADEDGMQLLVAKPEGVNDTFSRAMMKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGSXXXXXXASIQGS 727
            +MDAAERAFHNLGMKPTPENV+AEATRKAAVSFIIKRIQVDR+E+PEEAGG AV SHKVSMLQMAADEDGMQLLV KPEGVNDTFSRAM KRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGS X    ASIQGS
Sbjct:  325 QMDAAERAFHNLGMKPTPENVQAEATRKAAVSFIIKRIQVDRDESPEEAGGPAV-SHKVSMLQMAADEDGMQLLVEKPEGVNDTFSRAMTKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGSVXVARRASIQGS 472
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8956.17048.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.270e-7690.73protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.560e-7291.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8956contigE_fasciculatus_S2_contig8956:3549..6243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1309
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005240.2
Cds size459
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8956.17048.1prot_E_fasciculatus_S2_contig8956.17048.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8956 4128..5972 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842548.7867339-UTR-E_fasciculatus_S2_contig8956:3548..41271696842548.7867339-UTR-E_fasciculatus_S2_contig8956:3548..4127Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8956 3549..4127 -
1696842548.844005-UTR-E_fasciculatus_S2_contig8956:5972..62431696842548.844005-UTR-E_fasciculatus_S2_contig8956:5972..6243Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8956 5973..6243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842548.7977364-CDS-E_fasciculatus_S2_contig8956:4127..41811696842548.7977364-CDS-E_fasciculatus_S2_contig8956:4127..4181Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8956 4128..4181 -
1696842548.807247-CDS-E_fasciculatus_S2_contig8956:4767..48791696842548.807247-CDS-E_fasciculatus_S2_contig8956:4767..4879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8956 4768..4879 -
1696842548.8178377-CDS-E_fasciculatus_S2_contig8956:5401..56821696842548.8178377-CDS-E_fasciculatus_S2_contig8956:5401..5682Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8956 5402..5682 -
1696842548.8339639-CDS-E_fasciculatus_S2_contig8956:5960..59721696842548.8339639-CDS-E_fasciculatus_S2_contig8956:5960..5972Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8956 5961..5972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8956.17048.1

>prot_E_fasciculatus_S2_contig8956.17048.1 ID=prot_E_fasciculatus_S2_contig8956.17048.1|Name=mRNA_E_fasciculatus_S2_contig8956.17048.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=153bp
MKKEMDAAERAFHNLGMKPTPENVEAEATRKAAVSFIIKRIQVDREENPE
EAGGAAVVSHKVSMLQMAADEDGMQLLVAKPEGVNDTFSRAMMKRASIQE
VAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGSVEVARRASIQ
GS*
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mRNA from alignment at E_fasciculatus_S2_contig8956:3549..6243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8956.17048.1 ID=mRNA_E_fasciculatus_S2_contig8956.17048.1|Name=mRNA_E_fasciculatus_S2_contig8956.17048.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2695bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8956:3549..6243- (Ectocarpus fasciculatus EfasUO2)
GGTGAGGGTGCACCATATCCCCTCCTTTTCAGAGCGTCTCTTTGACGTGC
ATGTACGTTCCTATATGGTAGTTGGGTATTGTGGAGAAAGAACTCCCGAT
TGAATGTAATGAACTGTGCTCCTGATTCACGTACAATTTCCCGCTATCTC
TTGATCTCTTGCACGTTTCCTACCATGGCAGATACTGATATTCGATGCCA
GCACTTACCAAGAGCTAGCACAGGTGTGGGTGTGCTGGAGTACAGTGGTG
GCGAAGCTTGAAGCCAAGGAGATGAAGAAAGAGGTGTGTGTGTGAGCACA
CAGGTATAGCAGTAGTCAGGCTCAAGACGTGTTCCTACTTACGTGCTCAA
GAACGCAGGCCCTAGCGTACACTCCCCGACTTATTCCCTTCTCACTTCTG
CAAAACACCTCAAGACGAGGTGAAAGAAAGATCGCCCGCATGACAATACC
TCCTGCTCGTCCATACCTCGCGAACCTATCCTGCTGTACACAAATCAACC
ATTTATCGCGCTTTGTTTTAGCGTGAAACTCGTTTGAAATGCGGTGATGC
TAACGCGGCAGATGGACGCGGCGGAGAGGGCGTTCCACAACCTGGGGATG
AAACCGACGCCTGAGAACGTGGAGGCGGAGGCTACGCGCAAGGCCGCGGT
GTCCTTCATCATCAAGAGAATACAGGTGGATCGGGAGGAGAATCCCGAGG
AGGCCGGGGGCGCCGCCGTGGTGTCTCACAAGGTGTCCATGCTGCAGATG
GCCGCGGACGAGGACGGGATGCAGCTGCTCGTGGCTAAGCCGGAGGGGGT
CAACGACACCTTCAGCCGAGCGATGATGAAGCGAGCTTCCATGTGAGGGA
GTCGGCTCGTGTAGCGAGAGGACGCGGAATTGACGGGGGGGGGGGGGCTT
AGCTTGCTCAGGGGGGGTGCGAGAACGGCGGGAAATGCTCGCCAGGTTCA
TGCTTGATTTGAAGAGCACTTGTGAGAATGCCAAGTCTCTATATCAGAAT
ATATGGCTCATGTACAACCAGGATTGGTGTTTGAGTAGGTACGGTGGAGA
CCCCAGTGTTCTATCTAGCGACGCGTGAGGTGGCGTCAAGAACTACATAG
CGTAATAAACGTGGAAGGATGACGCATGAAAGAGCATTCTTCGGCACTAG
GAATTGGTCAATGAAAACCCAACTTTGCTGCGTTCTGGCGTACCTTGCCC
TTGTATTTTACCCCACGTACTTTTGGCAGCCATGAATTTATCGAGTTTCA
AGCACACCGTATCACGCTTGGGTTTCCCCGTGTGTCGTTGTTTGCGATGC
GGTGCGCGCACCTTTCTTTCACGTTTCGCTTTTTCTTCGGTGCGTGGTAC
TCCCTTTGATGCAGCCAAGAGGTCGCCGAGGTGATGACGAGCTTGAGGAA
GAGCCTGGGAGATGTTAACACCGCCGCCCAGGCGGCTGCCGCCAGTCTCG
TCGGGGCAACGGGTACCGTGGAGCAGGTAACACGCTGCTTCTGCTTGCCT
TACATTGATGCGCCTGAAGCGCCCCCAGACCTCGTCTGTCTCATTGATGA
TTAGTAATTGGATAGCACAAACATGCATGTACACGTTGGATTGGATGGAG
CATCAGCACTCTCATGTTCAACGGGGGTCCACTACGCCTGTGTTTTGTCT
ATTTCTTCGTTGGTGCCGGAGAACGCCGGGACAGGTGGATTTTGAAGGCA
TTCAAACATACGGTCACCATTTCCAAGAGAAAGACATCCTGCAACAGGCG
TGTTGAAGTCGATGCCTCACGCTCTACTTCTAGCCACATAGCGATCTGTC
AGAAGAGCTTTACGTCGCATGCTACCCATCGCCGTGGGTATTTTCTCTAT
CGAAACTTGCTTACACTCACCGGACCCGACAGAATAACACACAATGCAGT
GCGAGTGCGCGGTGCTTCTCTGCCGCTATAGTACATGACGACGATAAGCT
AAAAACACACGTGGCTTCCGTGTTGAGCATGAGCATACCACCTTCGTCAT
AAAATGCACCACGCCGCCACGCTCTCTCTGTCTACCGCTACGTCATTTCT
CTCTCATGTTAGGGTCGGCGTGGGTCGGTGGAGGTGGCGCGGCGAGCGTC
GATTCAAGGATCCTGATTCAAAATGGGCGATTCACGTGGGAGAGGCAACG
GGCGTCATCTTTCAAGACTAAATCTCCTAGTGTAGTATCACCCATTTCGC
AAATGAAGTAGAAGCATCATGGGAGTCAGACGGAGCCCGCCAGACAACAA
CGTTAAAATGTATTTACAGTAGAGCGCCGGGGGCTCAGCCTGCAGCAGTG
TTCCGTTCAATTTATTCGAGGTGCCACACATAGACTATGTACTTGAGAGA
GAACGCCCCGAGAGATACATAGAATAGGTGGGTTGTGTGTTGTGCGTGTA
AGCTGTTGTCGAATCCAACGTGTTCATCGTTCTACTCGATCACCTACATG
CCAATGCCCATAGTGCAACGGGTAGTCATTTCTTTGTGTGACCCCCATCG
AAGATACCCCCAGCAGATAAATAGAAAAGACCATAGATCAGGTTAGGATC
GATCTCATTGGGGGAACCGTGGGCAACGGGTTGTTGCCAGGAAGGGAAAA
ACGGGATTTAGTACTCCTACGTAGGCACCAGCATATCAAAATATACAGGT
ACAACACAATGGAGTTCGGTTAGTCTGCTCAAGAGCGAGGGCGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8956:3549..6243-

>mRNA_E_fasciculatus_S2_contig8956.17048.1 ID=mRNA_E_fasciculatus_S2_contig8956.17048.1|Name=mRNA_E_fasciculatus_S2_contig8956.17048.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=459bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8956:3549..6243- (Ectocarpus fasciculatus EfasUO2)
ATGAAGAAAGAGATGGACGCGGCGGAGAGGGCGTTCCACAACCTGGGGAT
GAAACCGACGCCTGAGAACGTGGAGGCGGAGGCTACGCGCAAGGCCGCGG
TGTCCTTCATCATCAAGAGAATACAGGTGGATCGGGAGGAGAATCCCGAG
GAGGCCGGGGGCGCCGCCGTGGTGTCTCACAAGGTGTCCATGCTGCAGAT
GGCCGCGGACGAGGACGGGATGCAGCTGCTCGTGGCTAAGCCGGAGGGGG
TCAACGACACCTTCAGCCGAGCGATGATGAAGCGAGCTTCCATCCAAGAG
GTCGCCGAGGTGATGACGAGCTTGAGGAAGAGCCTGGGAGATGTTAACAC
CGCCGCCCAGGCGGCTGCCGCCAGTCTCGTCGGGGCAACGGGTACCGTGG
AGCAGGGTCGGCGTGGGTCGGTGGAGGTGGCGCGGCGAGCGTCGATTCAA
GGATCCTGA
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