mRNA_E_fasciculatus_S2_contig8943.17038.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U7_ECTSI) HSP 1 Score: 445 bits (1144), Expect = 5.500e-140 Identity = 232/270 (85.93%), Postives = 248/270 (91.85%), Query Frame = 1
Query: 4 NQTNRTLVLVVGAQESSSAGLSASKIIQIIVEAINDGPSLTGPLTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASIGNIEQGGIEQAGMVAVASRNEAPTTTGSRVSFEGTADEVSDALGSLTYTSSMDWNS 813
++T TL LV+G QE SSAGLSASK IQIIV+AINDGPSLTGPL I+AEEDT I V GVAVQDPDCDDAPRGVLEI VAASNGTVQF+GSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTD+IVVTADDLGHSGTG QLSASWSI+V+VSASNDPP+IQAPPELDLI GGVLFVVEDESSPLGVFGVSDIDD FLRVTVSA +GN+ GGIE+ GMVAVAS +E PT TGS VSFEGTADEVSDALGSLTYTSS++WNS
Sbjct: 963 SETRGTLGLVIGTQEPSSAGLSASKTIQIIVDAINDGPSLTGPLAIEAEEDTSITVNGVAVQDPDCDDAPRGVLEITVAASNGTVQFIGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDKIVVTADDLGHSGTGSQLSASWSIDVLVSASNDPPLIQAPPELDLIVGGVLFVVEDESSPLGVFGVSDIDDPFLRVTVSARVGNVGYGGIEEVGMVAVASTDETPTATGSSVSFEGTADEVSDALGSLTYTSSLNWNS 1232
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW5_9PHAE) HSP 1 Score: 444 bits (1141), Expect = 1.390e-139 Identity = 231/268 (86.19%), Postives = 247/268 (92.16%), Query Frame = 1
Query: 10 TNRTLVLVVGAQESSSAGLSASKIIQIIVEAINDGPSLTGPLTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASIGNIEQGGIEQAGMVAVASRNEAPTTTGSRVSFEGTADEVSDALGSLTYTSSMDWNS 813
T+ TL LV+G QE SSAGLSA+K I+IIV+AINDGPSL GPL I+ EEDTPI V GVAVQDPDCDDAPRGVLEI VAASNGTVQF+GSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTG QLSASWSIEV+VSASNDPP+IQAPPELDLIAGGVLFVVEDESSPLGVFGVSD+DD FLRVTVSA +GN+ GGIE+ GMVAVASR+E P TGS VSFEGTADEVSDALGSLTYTSS++WNS
Sbjct: 989 THGTLGLVIGTQEPSSAGLSATKTIEIIVDAINDGPSLIGPLAIEVEEDTPITVNGVAVQDPDCDDAPRGVLEITVAASNGTVQFIGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGSQLSASWSIEVLVSASNDPPLIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDMDDPFLRVTVSARVGNVGYGGIEEVGMVAVASRDETPPATGSSVSFEGTADEVSDALGSLTYTSSLNWNS 1256
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: Cadherin (domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QLQ2_SAPDV) HSP 1 Score: 106 bits (264), Expect = 4.240e-22 Identity = 81/251 (32.27%), Postives = 125/251 (49.80%), Query Frame = 1
Query: 106 NDGPSLTGP-LTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPP--------VIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASIGNIEQGGIEQAGMVAVASRNEAPTTTG------SRVSFEGTADEVSDALGSLTYTSSMDWNS 813
N P +T P L+I +EDTP + G+ V D D D +++ +A +G Q S AGL ++E PG L V+G +N AL +Y G + G D IVVTA+DLG++GTGG AS ++ V++++ DPP + P + L+ G L + + ++S + V D L +++S ++G + AG+ AS T G S + GT D+++ AL L Y S DW S
Sbjct: 5472 NAAPVITLPALSIAIDEDTPYTLHGLVVTDDDAADTFGSEVQVTLACEHGHFQLDTSTAGLDILEEEPGLLHVQGPLELINYALQRATYVGALNYFGQDSIVVTANDLGNTGTGGPQQASATMAVVITSVCDPPTWASTPPALFSTPEDTPLLLSGALRLQDVDASVMDV-------DRVLTLSISVAVGGVLLA--THAGLHVTASS----TNDGVGHLYYSTATIAGTVDDLNAALRGLMYLSPADWTS 5709
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: Cadherin (domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C5K6_SAPPC) HSP 1 Score: 100 bits (249), Expect = 4.010e-20 Identity = 72/243 (29.63%), Postives = 122/243 (50.21%), Query Frame = 1
Query: 106 NDGPSLTGP-LTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPP--------VIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASIGNIEQGGIEQAGMVAVASRNEAPTTTGSRVSFEGTADEVSDALGSLTYTSSMDW 807
N P +T P + I +EDTP A+ G+ + D D D +++ +A +G + AGL +++ PG L V+G VN AL +Y G ++ G D IVVTA+DLG++GTGG AS ++ V +++ DPP + P + L+ G L +++ ++S + V D L +++S ++G + + A A+ + S + GT D+++ AL L Y + DW
Sbjct: 4555 NMPPIITLPAMRILIQEDTPYALQGLVITDADVVDTFGSEVQVTLACDHGHFDLESATAGLDILKHEPGLLHVQGPLELVNYALQRATYVGTRDYFGQDSIVVTANDLGNTGTGGPQQASATMAVAIASVCDPPTWTSTPPTLFSTPEDTPLLLSGALRILDVDASVMDV-------DRVLTLSISVAVGGVLLATHAGLHVTASAANDGVGRLYYSTATVAGTVDDLNAALRGLMYMPAADW 4790
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: retention (module-containing protein n=2 Tax=Aeromonas TaxID=642 RepID=UPI0005A86E22) HSP 1 Score: 92.4 bits (228), Expect = 2.260e-17 Identity = 66/218 (30.28%), Postives = 113/218 (51.83%), Query Frame = 1
Query: 4 NQTNRTLVLVVGAQ--ESSSAGLSASKIIQIIVEAINDGPSLTGPLTIQ-AEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEALPGSLKVRGKTGPVNAALAG-LSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASI 645
N N + L V AQ ++ + G I + + +ND P P Q A+EDTP + G+ V+D D ++P +E+ ++ +GT+ +G+ ++ GSL + G +NA L+G ++Y+G+ +F+G DR+ + DDLG++G+GG LS + + + V A ND PV Q P L V ED + L V D+D ++++ +
Sbjct: 2990 NDANGAVDLKVTAQSLDNGALGPEVGGNIHLDISPVNDAPVNVLPTDPQVAQEDTPFVIRGLQVKDVDAGNSP---IEVRLSVEHGTLNLPAG-SGVTVVGNGTGSLVLTGTLADLNALLSGGVTYQGIQDFNGQDRLTMVTDDLGNTGSGGPLSDTDVLPIEVQAVNDAPVNQVPASLS--------VKEDGALSLSGISVKDVDAGSAPISMTLRV 3195
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: retention (module-containing protein n=1 Tax=Aeromonas enteropelogenes TaxID=29489 RepID=UPI001CBFDC0D) HSP 1 Score: 92.4 bits (228), Expect = 2.260e-17 Identity = 67/218 (30.73%), Postives = 113/218 (51.83%), Query Frame = 1
Query: 4 NQTNRTLVLVVGAQ--ESSSAGLSASKIIQIIVEAINDGPSLTGPLTIQ-AEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEALPGSLKVRGKTGPVNAALAG-LSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASI 645
N N + L V AQ ++ + G I + + +ND P P Q A+EDTP + G+ V+D D ++P +E+ ++ +GT+ +G+ ++ GSL + G +NA L+G ++Y+GV +F+G DR+ + DDLG++G+GG LS + + + V A ND PV Q P L V ED + L V D+D ++++ +
Sbjct: 2996 NDINGAVDLKVTAQSLDNGALGPEVGGNIHLDISPVNDAPVNVLPTDPQVAQEDTPFVIRGLQVKDVDAGNSP---IEVRLSVEHGTLNLPAG-SGVTVVGNGTGSLVLTGTLASLNALLSGGVTYQGVQDFNGQDRLTMVTDDLGNTGSGGPLSDTDVLPIEVQAVNDAPVNQVPASLS--------VKEDGALSLSGISVKDVDAGSAPISMALRV 3201
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: Cadherin (domain-containing protein (Fragment) n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2A2EAP0_9PSED) HSP 1 Score: 90.9 bits (224), Expect = 6.930e-17 Identity = 71/260 (27.31%), Postives = 121/260 (46.54%), Query Frame = 1
Query: 37 GAQESSSAGLSASKIIQIIVEAINDGPSLTGPLTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEALPGSLKVRGKTGPVNAALAG--LSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASIGNIEQGGIEQAGMVAVASRNEAPTTTGSRVSFEGTADEVSDALGSLTYTSSMDWN 810
G S + SK + + V A+ND P + P +I ED +TG+ V D D A G +E V+ S+GT+ G G L+ V G +N LA L++ + +G + + +D G++G+GG L+ + ++ ++V+A ND PV PP + VL + + + V D +RVT++A+ G I GG A ++A T FEGT +++ AL ++++ + +N
Sbjct: 982 GGNTGSGGAQTDSKTVTLQVAAVNDAPVINAPASINVNEDVTTVLTGITVTDVD---AGTGEIEATVSVSSGTLVLNGDNVGSSLV-------LVGGNLQDLNDFLASGLLAFRTDSNATGNAVLTIQVEDFGNTGSGGSLTDTATVTLVVTAVNDAPVNSLPPAQSVDQDSVLVFSSGNGNQISISDV-DAGSGNVRVTLTATNGLISLGGTTGLSFTAGDGTSDATMT------FEGTLADINAALNGMSFSPTGGYN 1224
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: Cadherin (domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=C5JBP6_9BACT) HSP 1 Score: 90.9 bits (224), Expect = 7.480e-17 Identity = 74/246 (30.08%), Postives = 114/246 (46.34%), Query Frame = 1
Query: 103 INDGPSLTGPLTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGS-----VAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDIDDAFLRVTVSASIGNIEQGGIEQAGMVAVASRNEAPTTTGSRVS-----FEGTADEVSDALGSLTYTSSMDWN 810
+N P P + ED + G+ VQDPD + G L + ++ G + G VAG L + G + G V ALAGLSY+G +F+G+DR+ ++ DD G +GTGG L + ++ + V A ND PV P V ED S L ++D DD + V+ S+G G++ +A + TTG S F GT ++ A+G++TY + ++N
Sbjct: 632 VNQAPVHRVPASWVVMEDQAQLLAGLEVQDPD---SGGGQLRVTLSVQFGLLTLAGREGLTFVAGDGLQD---GKMVFTGTLAVVQKALAGLSYQGAGDFNGSDRLTLSTDDQGATGTGGALVTTDAVAITVGAVNDAPVNTVP--------AAQTVNEDTSLALTGLAITDGDDGGGTLQVTLSVGQ---------GVLTLAQTSGLTFTTGDGTSDATLVFTGTKSNINSAIGTVTYLGASNYN 854
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: Tandem-95 (repeat protein n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=UPI0019E56639) HSP 1 Score: 87.8 bits (216), Expect = 8.320e-16 Identity = 76/262 (29.01%), Postives = 122/262 (46.56%), Query Frame = 1
Query: 37 GAQESSSAGLSASKIIQIIVEAINDGPSLTGPLTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEAL---PGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDID-DAFLRVTVSASIGNIEQGGIEQAGMVAVASRNEAPTTTGSRVSFEGTADEVSDALGSLTYTSSMDWN 810
G LS + +I + V +N+ P LT P + ED ++G+ V D D A ++++++ +NGTV + S AG+ + SL G +N LAGLSY G +FSG+D + ++ D ++ G S + +I + V+ ND P++ P G V E+ + VSD+D L V +S+S G + I AG+ A + V F GT V+DAL +L Y ++ D+N
Sbjct: 934 GGNTGLGGALSDAGVITLSVAPVNEPPVLTVPPALTVREDVSSPISGITVADLD---AGASLIQVSLFVANGTVS-LNSTAGVVITTGTGTRDKSLVFTGSLAAINTVLAGLSYLGDRDFSGSDTLTISVSDSLNNTNGIPFSDTETIAITVTPQNDAPILTVP--------GAQTVNENTDLRILGISVSDVDATGDLTVNLSSSSGRVSLSSI--AGLTFDAGDG----SQDDAVIFRGTQAAVNDALRTLIYRANPDFN 1177
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Match: CADG (domain-containing protein (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522W8X1_9PROT) HSP 1 Score: 87.4 bits (215), Expect = 1.150e-15 Identity = 70/228 (30.70%), Postives = 113/228 (49.56%), Query Frame = 1
Query: 19 TLVLVVGAQESSSAGLSASKI-IQIIVEAINDGPSLTGPLTIQAEEDTPIAVTGVAVQDPDCDDAPRGVLEINVAASNGTVQFVGSVAGLYLMEA---LPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGGQLSASWSIEVIVSASNDPPVIQ-----APPELDLIAGGVLFVVEDESSPLGVFGVSDID-DAF--LRVTVSASIGNIEQGG 666
T V V + S +SA + + V A+ND P++T EDTP+A+ G + D D L++ ++A +GT+ +G++ GL ++ G +N ALA LSY+G ++ G+D + T DLGH+G+GG L+A+ + V V++ ND PV+ APP+ F + D S+ +D++ DA ++VTV S G I G
Sbjct: 34 TAVTVSTSVTGGSTAISAGTVTLDTSVTAVNDAPTVTFSSAAPVAEDTPLAMGGFTIADVDA--GSTDTLQVTLSAGHGTLT-MGTLTGLSFSVGDGTSDAAMIFTGTKAEINTALASLSYQGNQDYFGSDEVQATVSDLGHTGSGGTLTATKTASVTVTSVNDAPVVASTGTAAPPD-----SAYTFTLADFSA-----AYADVESDALTAIQVTVLPSQGTITLNG 248 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8943.17038.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8943.17038.1 >prot_E_fasciculatus_S2_contig8943.17038.1 ID=prot_E_fasciculatus_S2_contig8943.17038.1|Name=mRNA_E_fasciculatus_S2_contig8943.17038.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=271bp MNQTNRTLVLVVGAQESSSAGLSASKIIQIIVEAINDGPSLTGPLTIQAEback to top mRNA from alignment at E_fasciculatus_S2_contig8943:1519..2331- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8943.17038.1 ID=mRNA_E_fasciculatus_S2_contig8943.17038.1|Name=mRNA_E_fasciculatus_S2_contig8943.17038.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=813bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8943:1519..2331- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8943:1519..2331- >mRNA_E_fasciculatus_S2_contig8943.17038.1 ID=mRNA_E_fasciculatus_S2_contig8943.17038.1|Name=mRNA_E_fasciculatus_S2_contig8943.17038.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=813bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8943:1519..2331- (Ectocarpus fasciculatus EfasUO2)back to top |