mRNA_E_fasciculatus_S2_contig8941.17037.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8941.17037.1
Unique NamemRNA_E_fasciculatus_S2_contig8941.17037.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8941.17037.1 vs.
Match: Magnesium (chelatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G575_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.390e-32
Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 DRREEEIAHEQLLFGMEYFRWGWLRFLRQLGNKQAADDINRELDAMNEIGRDQEGVAVSSSPPSSHQGQHDGGVSAAEEADSE 249
            DRREEEIAHEQLLFGMEYFRWGWLRFLRQLGNKQAADDIN+ELDAMNEIGRDQ+G+AVSSSP     G+    VSAAE A+SE
Sbjct:  833 DRREEEIAHEQLLFGMEYFRWGWLRFLRQLGNKQAADDINKELDAMNEIGRDQQGMAVSSSPXXXX-GESATSVSAAEAAESE 914
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BLAST of mRNA_E_fasciculatus_S2_contig8941.17037.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU3_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.510e-32
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 DRREEEIAHEQLLFGMEYFRWGWLRFLRQLGNKQAADDINRELDAMNEIGRDQEGVAVSSSPPSSHQGQHDGGVSAAEEADSE 249
            DRREEEIAHEQLLFGMEYFRWGWLRFLRQLGNKQAADDIN+ELDAMNEIGRDQ+G+AVSSS      G++   VSAAE A+SE
Sbjct:  606 DRREEEIAHEQLLFGMEYFRWGWLRFLRQLGNKQAADDINKELDAMNEIGRDQQGMAVSSSXXXXX-GENPASVSAAEAAESE 687
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8941.17037.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Magnesium1.390e-3281.93chelatase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Uncharacterized3.510e-3280.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8941contigE_fasciculatus_S2_contig8941:1081..1840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score130.6
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog2880.D7G575
Preferred nameCHLH2
Model size252
KEGG rclassRC01012
KEGG koko:K03403
KEGG ReactionR03877
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.CobN/Magnesium Chelatase
EggNOG OGs2RFFJ@2759,COG1429@1
EC6.6.1.1
Cds size249
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842547.8734865-CDS-E_fasciculatus_S2_contig8941:1081..12791696842547.8734865-CDS-E_fasciculatus_S2_contig8941:1081..1279Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8941 1082..1279 -
1696842547.893134-CDS-E_fasciculatus_S2_contig8941:1789..18401696842547.893134-CDS-E_fasciculatus_S2_contig8941:1789..1840Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8941 1790..1840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8941.17037.1prot_E_fasciculatus_S2_contig8941.17037.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8941 1082..1840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8941.17037.1

>prot_E_fasciculatus_S2_contig8941.17037.1 ID=prot_E_fasciculatus_S2_contig8941.17037.1|Name=mRNA_E_fasciculatus_S2_contig8941.17037.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp
DRREEEIAHEQLLFGMEYFRWGWLRFLRQLGNKQAADDINRELDAMNEIG
RDQEGVAVSSSPPSSHQGQHDGGVSAAEEADSE
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mRNA from alignment at E_fasciculatus_S2_contig8941:1081..1840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8941.17037.1 ID=mRNA_E_fasciculatus_S2_contig8941.17037.1|Name=mRNA_E_fasciculatus_S2_contig8941.17037.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=760bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8941:1081..1840- (Ectocarpus fasciculatus EfasUO2)
GATCGGCGGGAGGAGGAGATAGCGCACGAGCAGCTGCTGTTTGGGATGGA
GGTGAGCATGTGGAGAGGCGGGGTAGAGAGGTAGAGGGGTTGGCGATACA
TGGGCATGCCCCGCCTCTCTGTACATCACACCCCTTTTCTTGATGAGACT
GATGGTGCACGTTACGGGTAGCCTCGACGGTGTGGTGTTGCGTGCTGTGT
AGCCTTGTGTAGCTGGTCTCGTGCTCTGAGGGACTGCGAGGGAGGGCAGC
TGAAGGGTGATGCTACGCTATGAAATGATGTTTGGTCGTCATCGGCTCTC
GTACCAGTCCGAGAGGTGACATGCACCAATGAGTTGATTGATTCCTCCTC
TGAAGACACCCTTTGGCACCAGCCAACGATCGGCGCTCATCTGTCGGGAG
TGTGTTCCTTGTCTACAGTAGTTGCATACCGTTGTTGGAGGGCAGCACAT
TTGTTTGAAACACTCTTTCGCTATGAGTGAGGTAGGTATATCTACCCCGT
ACGGCCGATATCACTGAGCCCCCCCCCCCACCCCCCACCCCTCGTACCGG
CCCTGCTCCAGTACTTCCGGTGGGGGTGGCTGCGGTTCCTTCGCCAGCTC
GGGAACAAGCAGGCAGCTGACGACATCAACAGAGAGCTCGATGCGATGAA
CGAAATCGGTCGGGATCAAGAGGGGGTCGCCGTCTCGTCATCGCCACCGT
CGTCGCACCAAGGGCAACACGACGGAGGCGTGTCGGCTGCTGAGGAGGCA
GACAGCGAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8941:1081..1840-

>mRNA_E_fasciculatus_S2_contig8941.17037.1 ID=mRNA_E_fasciculatus_S2_contig8941.17037.1|Name=mRNA_E_fasciculatus_S2_contig8941.17037.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8941:1081..1840- (Ectocarpus fasciculatus EfasUO2)
GATCGGCGGGAGGAGGAGATAGCGCACGAGCAGCTGCTGTTTGGGATGGA
GTACTTCCGGTGGGGGTGGCTGCGGTTCCTTCGCCAGCTCGGGAACAAGC
AGGCAGCTGACGACATCAACAGAGAGCTCGATGCGATGAACGAAATCGGT
CGGGATCAAGAGGGGGTCGCCGTCTCGTCATCGCCACCGTCGTCGCACCA
AGGGCAACACGACGGAGGCGTGTCGGCTGCTGAGGAGGCAGACAGCGAA
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