mRNA_E_fasciculatus_S2_contig8940.17036.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8940.17036.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT4_ECTSI) HSP 1 Score: 736 bits (1901), Expect = 5.540e-255 Identity = 503/660 (76.21%), Postives = 516/660 (78.18%), Query Frame = 1
Query: 1 GAEAG-WMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPEDVAAXXXXXXXXXXXXXXAP-----GPSRTKPAAVAATAAPFGMEFQQPVWRPVGGRRGSXXXXXXXXXXXX----RYLRGGEAANVTGAHSFLGGLEEDSRSDTTGWGGFSAASRISASDVDGG-----------GGDDEALRAWEEAEDWVGAGRSIAWAPGEEQEEYAQGEAGGLFAAPRGLGAVHGSRRHRTQSGGGGAGSARRGGIAGARRSAVRDAVARRRLDRLDRGSSLLGDAAQGFPADGRSGVSGDGDR--GDSFLAAEWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFDDEDAEETSAGSSAAWEPEGAVRVPLGGGPRXXXXXXXXXXXXXXXXXXX--RSRNSPSRRDGGQRAGRREAHTGWLGDFGPVHTHTVREVAGDVEEQXXXXXXXXXXXXXXARAWGAAGSRDDR-APPRGHRSRSDESTTSGKGSGGHAEEKGGRGQIGGTDRGVGVGGKGDGSASEDVREGGGVDESTGAARGSNGGGVTNEGPGAGDEGNASVNDXXXXXXXXXLGRAGTGDFNVVAPLDGGLDAYLQLASDGGAAVGGXXXXXXXXXEEXXXEGPGLXXXXXXXYTGATSGSWWEEDRSALEGGVAVPSPT 1902
GAEAG WMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPEDVAAXXXXXXXXXXXXXX GPSR KPA VAATAAPFGMEFQQPVW+PVGGRRGS XXXXXXXXXX R+LRGGEA NVT A SFLGGLE DSRSDTTGWGGFSAASRISASD DGG EALRAWEEAEDWVGAGRSIA APGEEQEE+A+GEAGGLFAAPRGLGAVHGSRR R QSGG AG A R IAGARRSAVRD VARRRLDRLDRGSSL GDA QGFPADGRSGVSGDGDR G S LAAEWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFD ED ++ SAGSSAAWEPEGAVR PLGGGPR RSRN SRRDGGQRAGRREAHTGWLGDFGPVHTHTVREVAGDVEE+ XXXXXXXXXX RAWG A RD +PPR H SD TTS +GSGGHAEEKG RG GVG GG GD SASEDVREG GVDESTGAARGS+GGG T EG G G+ S N XXXXX LG+ TGDFNVVAPLDGGLDAYLQLASDGGA XXXXXXXXX EGPGL YTGATSGSWWEEDRSALEGG +P PT
Sbjct: 318 GAEAGGWMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPEDVAAXXXXXXXXXXXXXXXXXXXXAGPSR-KPATVAATAAPFGMEFQQPVWKPVGGRRGSVAXXXXXXXXXXXXXXRFLRGGEAENVTSAESFLGGLEADSRSDTTGWGGFSAASRISASDGDGGPYPGEGXXXXXXXXXEALRAWEEAEDWVGAGRSIARAPGEEQEEHARGEAGGLFAAPRGLGAVHGSRRRRKQSGG--AGDAGR--IAGARRSAVRDTVARRRLDRLDRGSSL-GDATQGFPADGRSGVSGDGDRDRGGSSLAAEWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFDGEDGDQISAGSSAAWEPEGAVRGPLGGGPRQTHRPGGALRGRYDSGGGGGSRSRNGLSRRDGGQRAGRREAHTGWLGDFGPVHTHTVREVAGDVEEEEEXXXXXXXXXXGDGRAWGTASRRDGGVSPPRDHGG-SDGGTTSRQGSGGHAEEKG-RG-------GVGEGGSGDVSASEDVREGRGVDESTGAARGSDGGGATREGSDPGGGGSTSPN--XXXXXDVGLGQGETGDFNVVAPLDGGLDAYLQLASDGGAXXXXXXXXXXXXXXXGGREGPGLGGGSPGGYTGATSGSWWEEDRSALEGGDVIPGPT 960
BLAST of mRNA_E_fasciculatus_S2_contig8940.17036.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP21_9PHAE) HSP 1 Score: 637 bits (1644), Expect = 2.230e-215 Identity = 456/727 (62.72%), Postives = 472/727 (64.92%), Query Frame = 1
Query: 1 GAEAGWMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPEDVAAXXXXXXXXXXXXXX-----APGPSRTKPAAVAATAAPFGMEFQQPVWRPVGGRRGSXXXXXXXXXXXXRYLRGGEAANVTGAHSFLGGLEEDSRSDTTGWGGFSAASRISASDVDGG--------GGDDEALRAWEEAEDWVGAGRSIAWAPGEEQEEYAQGEAGGLFAAPRGLGAVHGSRRHRTQSGGGGA------------------------------------------GSARRGG-------------------------------IAGARRSAVRDAVARRRLDRLDRGSSLLGDAAQGFPADGRSGVSGDGD----RGDSFLAAEWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFDDEDAEETSAGSSAAWEPEGAVRVPLGGGPRXXXXXXXXXXXXXXXXXXX--RSRNSPSRRDGGQRAGRREAHTGWLGDFGPVHTHTVREVAGDVEEQXXXXXXXXXXXXXXARAWGAAGSRDDRAPPRGHRSRSDESTTSGKGSGGHAEEKGGRGQIGGTDRGVG-VGGKGDGSASEDVREGGGVDESTGAARGSNGGGVTNEGPGAGDEGNASVNDXXXXXXXXXLGRAGTGDFNVVAPLDGGLDAYLQLASDGGAAVGGXXXXXXXXXEEXXXEGPGLXXXXXXXYTGATSGSWWEEDRSALEGGVAVPSPT 1902
G+EAGWMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPEDVAAXXXXXXXXXXXXXX A GPSR KPAAV ATAAPFGMEFQQPVW+ GG RYLR VT A SF+GGLEEDSRSDTT WGGFS SRISASD DGG G DDEALRAWEEAEDWVGAGRSIA APGEEQE+YAQ EAG LFAA RGLGAVHGS R RTQS G G G RRG IAGARRSAVRD VARRRLDRLDRG + GD QGFPADGRSGVSGD D RG LA EWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFD ED+E+ SAGSSAAWEPEGAVRVPLGGG R RSRN SRRD GQRAGRREAHTGWLGDFGP HTHTVREVAGDVEE+ XXXXX RAWG A RD P R SD STTS + S G AEEKGG G+ G D GVG +G+ RE GVDESTGAARGS+GGG T EG G+ GN S N+ LG+A GDFNVVAPLDGGLDAYLQL SDG A G XXXXXXXXX XX EGP L XX YTGATSGSWWEEDRSALEGG VPSPT
Sbjct: 326 GSEAGWMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPEDVAAXXXXXXXXXXXXXXXXXXAAAGPSR-KPAAVPATAAPFGMEFQQPVWKRGGG---------------GRYLR------VTRADSFVGGLEEDSRSDTTRWGGFSETSRISASDGDGGPYPGEGVGGDDDEALRAWEEAEDWVGAGRSIARAPGEEQEDYAQEEAGDLFAAARGLGAVHGSSRRRTQSAGAGGAGXXXXXXXXXXXSGADWKEGTRPAGMWEVSPPAHVVASSRTGRGRRGQGARRESGPAYLRGVQSRIRPQLDAHKDRLRKIAGARRSAVRDTVARRRLDRLDRGGNP-GDVTQGFPADGRSGVSGDRDKDRDRGGYSLATEWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFDGEDSEQISAGSSAAWEPEGAVRVPLGGGLRQTNHPGGALRGRYDSGGGGGSRSRNGLSRRDDGQRAGRREAHTGWLGDFGPAHTHTVREVAGDVEEEEEEGRGXXXXXGD-GRAWGTASRRDGGVSPPRDRGGSDGSTTSRQVSEGPAEEKGGGGKGGRADGGVGGXXXRGEXXXXXXXREXXGVDESTGAARGSDGGGDTQEGSGSNGRGNTSTNENDDADIG--LGQAEMGDFNVVAPLDGGLDAYLQLVSDGRAVAGXXXXXXXXXXXXXXREGPALGXXSPGGYTGATSGSWWEEDRSALEGGDVVPSPT 1026 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8940.17036.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8940.17036.1 >prot_E_fasciculatus_S2_contig8940.17036.1 ID=prot_E_fasciculatus_S2_contig8940.17036.1|Name=mRNA_E_fasciculatus_S2_contig8940.17036.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=629bp MRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPEDVAAAAAQRRRRTITTTback to top mRNA from alignment at E_fasciculatus_S2_contig8940:2730..6347- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8940.17036.1 ID=mRNA_E_fasciculatus_S2_contig8940.17036.1|Name=mRNA_E_fasciculatus_S2_contig8940.17036.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3618bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8940:2730..6347- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8940:2730..6347- >mRNA_E_fasciculatus_S2_contig8940.17036.1 ID=mRNA_E_fasciculatus_S2_contig8940.17036.1|Name=mRNA_E_fasciculatus_S2_contig8940.17036.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1887bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8940:2730..6347- (Ectocarpus fasciculatus EfasUO2)back to top |