mRNA_E_fasciculatus_S2_contig8935.17032.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8935.17032.1
Unique NamemRNA_E_fasciculatus_S2_contig8935.17032.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ9_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 1.330e-135
Identity = 250/323 (77.40%), Postives = 271/323 (83.90%), Query Frame = 1
Query:   22 MAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLYDEPPPANLSPSPSPGNRG 990
            MAGS+MV SY++AVNQSL ILWGATY+LDWFW+SL+LF V PLVFGSYI RALRLAVIFHPR KQ LPWLIPERNHLF L A AVA LIIPIYQDMTL+VWE+I KQ   L + T+VLAGTLACIFPFI       VDDLFNIS+EL+IVT+LFL+L++G++CGLYF+V  WTG NLNFFITAA F VSVVGPLRRLAVDPLAG KQ  T RA LARRE+RS            EDVS SAKATADIRGSSRAVRVASRKLEEGFYG GVDEDXXXXXXXXXXXXXXXXXXXXXXXXX   TSLYDEPPPANLSPSPSPG+ G
Sbjct:    1 MAGSSMVVSYLAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVALLIIPIYQDMTLEVWEVIAKQVDLLASATLVLAGTLACIFPFI-----RKVDDLFNISRELIIVTILFLILAIGIKCGLYFEVDMWTGGNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTGRAVLARRETRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGFYGGGVDEDXXXXXXXXXXXXXXXXXXXXXXXXX---TSLYDEPPPANLSPSPSPGDPG 303          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.650e-112
Identity = 216/323 (66.87%), Postives = 238/323 (73.68%), Query Frame = 1
Query:   22 MAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLYDEPPPANLSPSPSPGNRG 990
            MAGS+MV SYV+AVNQSL ILWGATY+LDWFW+SL+LF V PLVFGSYI RALRLAVIFHPR KQ LPWLIPERNHLF L A  VAFLI+PIYQDMTL+VW+                                  VDDLFNIS+EL+IVT+LFL+L++G++CGLY++V  WTG NLNFFITAA F VSVVGPLR LAVDPLAG KQ   DRA LARR++RS            EDVS SAKATADIRGSSRAVRVASRKLEEG YG GVDE+         XXXXXXXXXXXXXXX    TSLYDEPPPANLSPSPSPG+ G
Sbjct:    1 MAGSSMVVSYVAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSATVVAFLIVPIYQDMTLEVWK----------------------------------VDDLFNISRELIIVTILFLILAIGIKCGLYYEVDMWTGGNLNFFITAAVFGVSVVGPLRLLAVDPLAGSKQRCMDRAVLARRDTRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDENDDDGCDTTPXXXXXXXXXXXXXXXA---TSLYDEPPPANLSPSPSPGDPG 274          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 3.190e-68
Identity = 137/284 (48.24%), Postives = 187/284 (65.85%), Query Frame = 1
Query:    1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSV----GLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDED 840
            RSA LV++ G  ++ + V AVN S++++W +   LDWFWMSL+LFF++P + GSYI RALRLAV+FHPR K+ LPWLIPERN++ +LL  +V  + IPIYQ+ TL+VWE+IPKQT  LTT  +V A TLACI+PFI      +VDDLFNISKEL++VT+  + L+V      E G  ++   W G+N++ FI A  F +S+V PLRRLA+DPLA  K++  DR  L+R    ST+RTAS   S      S  +A ++             +LEEG  G  +D+D
Sbjct:    3 RSAHLVMVEGVCVLLTMVVAVNGSINVVWDS--GLDWFWMSLLLFFISPALKGSYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIYQEYTLEVWEIIPKQTTILTTEALVFAVTLACIYPFI-----RNVDDLFNISKELLLVTVAIVCLAVVQKAAAEWGGVYE-QRWVGNNISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLSRTAPDSTVRTASGVSSGRSRDPSRIRANSEEEA----------RLEEGDLGGVLDKD 268          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ7_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 2.590e-59
Identity = 111/210 (52.86%), Postives = 147/210 (70.00%), Query Frame = 1
Query:   52 VSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLEC-GLYFDVSS--WTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLAR 672
            ++AVN +++I+W +   LDWFW+SL+LFFV+P +FGSYI RALRLAV+FHP+ K+ LPWLIPERN++ +L+ A+   L IP+Y + TL+VWE+IPKQT  L  V++  A   ACI+PFI      +VDDLF+ISKEL IVT   ++L+VG +  G Y  V    W G+NL     A  F VSVV PLRRLA DPLA  K++  DR  L+R
Sbjct:    2 LAAVNGAINIVWDS--GLDWFWVSLLLFFVSPALFGSYICRALRLAVVFHPKAKRALPWLIPERNYVAVLMVASCGMLAIPLYHEYTLEVWEIIPKQTDILIWVSIAFAVVQACIYPFI-----RNVDDLFSISKELAIVTAAVILLAVGQKLEGDYGGVYERRWLGNNLFLLFAAVVFSVSVVDPLRRLAFDPLAATKRNYADRVLLSR 204          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 3.410e-57
Identity = 118/234 (50.43%), Postives = 157/234 (67.09%), Query Frame = 1
Query:    1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLEC----GLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRST 690
            RSA LV + G +++ S +  VN + +I+W +   LDWFW+SL+LFFV+P +FGSYI RALRLAV+F+PR K  LPWLIPERN+L +LL A++  L IPIY + TL+VW+ IPKQT  L     VLA  L CI+PFI      +VDDLFNIS EL+ VT+  +V+++  E     G  F+   W  SN++    A  F +S+V PLRRLA+DPLA  K++  DR  L+R ES ST
Sbjct:   97 RSAHLVTLQGVSLLLSMLVTVNGATTIVWDS--GLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKSALPWLIPERNYLAVLLLASIGILAIPIYHEYTLEVWDAIPKQTSILKAQARVLAVMLVCIYPFI-----RNVDDLFNISTELITVTVTIVVVTIVQEVVDKWGGNFE-QRWLTSNISVVFVAVLFCISIVAPLRRLALDPLAATKRNYADRVLLSRTESHST 322          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 5.270e-54
Identity = 121/242 (50.00%), Postives = 157/242 (64.88%), Query Frame = 1
Query:    1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFI--TAAAFWV----------SVVGPLRRLAVDPLAGIKQSRTDRASLARRESRST 690
            RSA LV + G +++FS +  VN + +I+W +   LDWFW+SL+LFFV+P +FGSYI RALRLAV+F+PR K+ LPWLIPERN+L +LL A++  L IPIYQ+ TL+VW+ IPKQT  L T   VLA  L CI+PFI      +VDDLFNISKEL+ VT+   V++   E   +   S+   S L   +  T   F            SVV PLRRLA+DPLA  K++  DR  L+R ES ST
Sbjct:   19 RSAHLVTLQGVSLLFSMLVTVNDATTIVWDS--GLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKRALPWLIPERNYLAVLLLASIGILAIPIYQEYTLEVWDAIPKQTSILKTQARVLAVMLVCIYPFI-----RNVDDLFNISKELITVTVTIAVVTC--EAHSFVHRSTHVESCLQQHVPPTTKRFPYPMSPSNLSTRSVVAPLRRLALDPLAATKRNYADRVLLSRTESHST 251          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 3.310e-50
Identity = 110/237 (46.41%), Postives = 150/237 (63.29%), Query Frame = 1
Query:    1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSS--WTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTAS 705
            RSA LV++ G A + + +  VN S +++W   +  DWFW+SL+LFF++P +FGSYI RALRLAV+FHPR K+ LPWLIPE N++ +LL A+V  L IPIY + TL VW+ I KQT  L     VLA  LACI+PFI      +VDDLF+IS EL+IVT   ++++     G ++      W  +N++       F VS++ PLRRLA DPLA  + +  +R    R E  ST R AS
Sbjct:   86 RSAYLVMVGGVAGILTMLVTVNDSTTVVWDIGF--DWFWISLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLIPEHNYMVVLLVASVGMLAIPIYHEYTLGVWDAISKQTNILKIEARVLAVALACIYPFI-----RNVDDLFSISTELIIVTATIVLITSEEVDGQWWGPYERRWFANNMSVVFMIILFGVSIIAPLRRLASDPLAATRHNYANRVLPNRTEPHSTARRAS 315          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 2.190e-49
Identity = 106/224 (47.32%), Postives = 142/224 (63.39%), Query Frame = 1
Query:    1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSV-----GLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDR 657
            RSA LV++ G A + + +  VN + +++W   +  DWFW SL LFF++P +FG YI RALRLAV+FHPR K+ LPWLIPERN++ +LL A+V  L IPIY + TL VW+ I KQT  L     VLA  LACI+PFI      +VDDLF+IS EL+IVT    ++++     GL  G Y     W  +NL+       F VS+V PLRRLA DP A  +++  +R
Sbjct:   86 RSAYLVMVGGVAGILTMLVTVNDATTVIWDTGF--DWFWTSLFLFFISPALFGRYICRALRLAVVFHPRVKRALPWLIPERNYMVVLLVASVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFI-----RNVDDLFSISTELIIVTATIGLITIVQEIDGLWGGCY--ERRWLANNLSVLFMIVLFGVSIVAPLRRLASDPFAATRRNYANR 300          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.440e-39
Identity = 79/152 (51.97%), Postives = 107/152 (70.39%), Query Frame = 1
Query:   19 LMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVT 474
            ++ G A + + +  VN + +++W   +  DWFW SL+LFF++P +FGSYI RALRLAV+FHPR K+ LPWL+PERN++ +LL ++V  L IPIY + TL VW+ I KQT  L     VLA  LACI+PFI      +VDDLF+IS EL+IVT
Sbjct:    1 MVGGVAGILTMLVTVNDATTVIWDTGF--DWFWTSLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLVPERNYMVVLLVSSVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFI-----RNVDDLFSISTELIIVT 145          
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.820e-28
Identity = 87/237 (36.71%), Postives = 126/237 (53.16%), Query Frame = 1
Query:    1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLEC-----GLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMR 696
            RSA LV++ G   + + +  +N S++++W     LD+FW+SL+LF V P + GSYI R LRLAV+FHPR K+ LPWLIP          +   +     Y D  L  +                 A  LAC FPFI      +VDDLF+ISKE++IVT   ++L++         G+Y     W   +++    A  F VS+V PLRRLA DPLA  + +  +R  L+R E  +++R
Sbjct:    3 RSAYLVMVEGVCALLTMLVTLNSSINVVWDC--GLDYFWVSLLLFLVVPTLLGSYICRVLRLAVVFHPRAKRALPWLIPGGR-------SDAGY-----YPDDDLSAF-----------------AVALACTFPFI-----RNVDDLFSISKEIIIVTAAVVILAIEQNVVDKWGGVY--ERRWIDKSVSILFVAVLFGVSIVDPLRRLAFDPLAATQHNHANRILLSRTEPHNSVR 201          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized1.330e-13577.40protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
RGS1.650e-11266.87domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS3.190e-6848.24domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Uncharacterized2.590e-5952.86protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RGS3.410e-5750.43domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RGS5.270e-5450.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS3.310e-5046.41domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS2.190e-4947.32domain-containing protein n=2 Tax=Ectocarpus silic... [more]
RGS7.440e-3951.97domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RGS1.820e-2836.71domain-containing protein n=1 Tax=Ectocarpus silic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8935contigE_fasciculatus_S2_contig8935:1317..6065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1107
Hectar predicted targeting categorysignal peptide
Exons7
Cds size1086
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8935.17032.1prot_E_fasciculatus_S2_contig8935.17032.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8935 1317..6044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842547.3623989-CDS-E_fasciculatus_S2_contig8935:1316..17371696842547.3623989-CDS-E_fasciculatus_S2_contig8935:1316..1737Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8935 1317..1737 -
1696842547.374121-CDS-E_fasciculatus_S2_contig8935:2674..27731696842547.374121-CDS-E_fasciculatus_S2_contig8935:2674..2773Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8935 2675..2773 -
1696842547.385298-CDS-E_fasciculatus_S2_contig8935:3061..31521696842547.385298-CDS-E_fasciculatus_S2_contig8935:3061..3152Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8935 3062..3152 -
1696842547.3959618-CDS-E_fasciculatus_S2_contig8935:3514..35811696842547.3959618-CDS-E_fasciculatus_S2_contig8935:3514..3581Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8935 3515..3581 -
1696842547.4073305-CDS-E_fasciculatus_S2_contig8935:4021..41271696842547.4073305-CDS-E_fasciculatus_S2_contig8935:4021..4127Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8935 4022..4127 -
1696842547.4178872-CDS-E_fasciculatus_S2_contig8935:5141..52271696842547.4178872-CDS-E_fasciculatus_S2_contig8935:5141..5227Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8935 5142..5227 -
1696842547.428583-CDS-E_fasciculatus_S2_contig8935:5828..60441696842547.428583-CDS-E_fasciculatus_S2_contig8935:5828..6044Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8935 5829..6044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842547.4388301-UTR-E_fasciculatus_S2_contig8935:6044..60651696842547.4388301-UTR-E_fasciculatus_S2_contig8935:6044..6065Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8935 6045..6065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8935.17032.1

>prot_E_fasciculatus_S2_contig8935.17032.1 ID=prot_E_fasciculatus_S2_contig8935.17032.1|Name=mRNA_E_fasciculatus_S2_contig8935.17032.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=362bp
MAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYIS
RALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQV
WELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIV
TMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVD
PLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGS
SRAVRVASRKLEEGFYGAGVDEDDDDDDDSCDTTPTAPTPAAVAAAVAAV
ATSLYDEPPPANLSPSPSPGNRGGKRGNRGETFLKEGGGGGGGGGGGGGG
GGGGGGEEMVEA
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mRNA from alignment at E_fasciculatus_S2_contig8935:1317..6065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8935.17032.1 ID=mRNA_E_fasciculatus_S2_contig8935.17032.1|Name=mRNA_E_fasciculatus_S2_contig8935.17032.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4749bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8935:1317..6065- (Ectocarpus fasciculatus EfasUO2)
AGATCGGCGCGTCTCGTCCTGATGGCCGGCTCGGCCATGGTGTTTTCGTA CGTGTCGGCCGTCAACCAGTCGCTGTCGATTCTGTGGGGAGCGACCTACG CGCTGGACTGGTTCTGGATGTCCCTGGTGCTGTTCTTCGTCACGCCCCTC GTGTTCGGGAGCTACATCTCCCGCGCGCTCCGCCTGGCCGTGATTTTCCA CCCGAGGGGGAAGCAGACCCTGCCGTGGCTCATCCCGGTAAAATCCTCTC CTATCTGGTTGGGTTTATTCACAACAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAAGAGCAGTAGCAGCAGCTGCAGCACCAGCAAGAGATTTTCGATT CCCGTTGCAGCATGTGTTGGTGCACCTCCCCCTCCTCTCTGGCGTGTCCT GTCTGGGTCCTCTGGCGTCGCGCCCGCCTTCGATACTCGTGCGTGCCTGC TAGTTTGCGCCCCGATAGATGACCGAATCATGTTTTTTATCGCTCTCTCT CTGACCATGAGAACCCACCCACTCACCCCCCAATGCCCTTGGCGCGCCTT GTGCGGAGAGTTTGTGTACGTGTCGTCCGTGTCATGACTTCCGATTCAAG TGCCTAGTAGTATGAGACGTTGATTTCGTGGAGCAGCTAGCTTACTCTCT TCCGTCGTGTATAGACACAGTTGTAGGTCGAAGAGCTCAAAGTACTTTTT TTCTGGCTGGTGGTTGAGTCTGGGTGCGAAGTCCACGATGTACGCCTGCG TGAGCGCATGCATGGCTTTAATTTGCGTGTCAACGTTGTTGTGTTAATTC CCCCCCTCCCCCCCCCCCGGATCAACCCCTTTGTCTAGGAGCGGAACCAC TTGTTCATCCTGTTGGCAGCGGCTGTCGCGTTCTTGATCATCCCGATCTA CCAGGACATGACCCTCCAAGTGTGGTGAGAGGGAAAGGGAAGGATCCAGC TGAGCGAGCGAATCCATGGACGGAGGGATAAGGAAGGGGGGGGGCGTCCA TGCGCTGCCTGTGTAGTTTTTGATCAGTGTCTTCACTCCTTTATGGTACC GCCGATGGTGTTTGTGCAAGCAAAGTGTTTGTTTGGAAGAATCTTCTGTT GTGGTACATGGTTTGTTACATTACGTCCGTTTTTTTGCTGTTTTGCTCGA AGGACGTTTGTTTCATCCAGTGCTCGTGGTGCCCTCGCACCTCGACTCTC TCTCTCTCTCTCCCTCTCTCTGCACCTTCCTCCCCGAAGAAAGTGTCGGT GAGAGAGGCATGTCTGTGCAACTAGTCGGTATGCGAGGAGGTTTTCATTG CTCGAACCCCCAAGTATTTTTGCTACCCGCGTTGCCGTGTTTGGTTAGTT GTGTTGGAGTAGCCAGACGCGCGAGCACATACCGACGGCCGCAGAATGCC CCTCAATGGCTTCATTCTCCGGCCGTAGGTGTGTGCCTGCGCGACCTGAC TGCTTCAATACAACCACACCAAAACAGGGCAACATGGGCACAACAACCAC TTTGGGGTTCGAGCAATGGTGTAACCTCGTCGCATGCCCAAGAGAGGCCC AAACATGCCCTCTCACATCGAAATCCTCTTAGAGGAGAAGGGCGCGCAGA GAGAAAGCACCGAGGGGCGAGGGCACCACGAGCACTTGCTGGCTATCCGG GAATGAGTCGACTAGTCGAAGTGCGTTTATCACCGCCCGATACCTGCAGG CTTGCTGATGATGACTCGACCAACGTGGAGGGCTATTGGAGATTCGTCCG AAATATTCGGACTTAAAATGCCGCACACACGTGAAGGACAGGTGTAGAAG AAGATTTACAGCCATTGTTGCACAAACAAACTATAATATTTGGACAAATG AACAGCTTGTTTCTGATGAATGAATGTTGTACCGGCGTTTTGTATTTTGT TTCCGTTCGCGCGGTGCCCGCTGCCTGCCTGACCCCAGGGAGCTCATCCC GAAGCAGACGGGCGCCCTGACAACCGTCACTGTTGTCCTCGCGGGAACGT TGGCGTGCATCTTCCCCTTTATCTGGCAAGAACCAATAGGCAGCGTCCTG ATCCGGTTTCTACGTTGCGTGTGTATCATGTCGAAGACAAGGGTGAATAT TTTGTTGTTGTGGGTGTGGCAGGGCCAAGTGCACGTGGAAGCAGAGAAGG AGGATAGATACGGTGAGGCTCAGGCACGAAGAGCGTTCAGTCGGTCCAGC TTGCTCCCCCGCAGATCCTCGCCCACCTCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCACCCCACCAACACACACCCCCACCCACCACAACCCNNNNNN NNNNGGGGGCGGAAGGAAGGAGGGGAAGTAGGGAGAGGGGTCGGCCCACA AAGGCGGGATTGGCGCCCGCTCGCGCCCCCCCCACCCCTCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCACTCACCAACCTACAAGAAAAACCGACC GCATGAACACGCTCGCGCTGAAAACAACAGGAAGGTGGACGACCTCTTCA ACATCAGCAAGGAGCTCATGATCGTCACGATGTTGTTCCTCGTTCTTTCC GGTAAGTTTCTTCTGCGGCCGGGCGGGCGCTTCGGAATCTCGGCACAACG ATAGTCGTCGTCGTCGTCGTCGTCGTTGTGTTTTCGGGGGGCCCCGTGGA ATCGTGGCGCCGGCGTCGTAAGGAAGTGCCTGCTGTACGTGTTTTTGTTT CCTTTGTCATTCCTTGGTTGTGATCTTGCTTGTGTCTTTCTTTGACAGCC TTGTTTTAGTCCATAGCCGTTCCTTCCGCAAAGCCTTCGCTTCCCTGTGT TGGCTAAGAACACGTTATTTTGCTGCGGGCCAATTTTTTTGTCAGCACCG CCAACCCACACGCATGTACACCCCCGCCCTATCCCCCCGCCGTGTATGGT CGTGTTGTCTCAGTCGGACTCGAGTGCGGGCTGTATTTCGACGTGAGCAG TTGGACGGGGAGCAACCTCAATTTCTTCATAACGGCTGCGGCGTTCTGGG TCAGGTGGGTCGAGGAGAGAGAGCCAGCCGTCGAGAGACACACATAGCCA GAAAAACACCAAATGTGCGTGCCAGAGAGACAACAATCGGAACAGTAAAT AGGCGCATGGTTATGCAGTACTGTAGCATGGCGCCGCTCCGCGCTGCCGC CGAGGTACTGCGGCGAAGAAAGCTGGATTGGAACGATGCTTGTGCTGACA GGATACGTACCCGCGCTCATCATGCAACACATGCTCCAACACCACCACCA CCACCACCACCACCACCTTGCCTGACCCCGACACCCACGCAGCGTGGTGG GCCCGCTGCGTCGTCTCGCGGTTGACCCCCTGGCGGGGATCAAGCAGAGC CGCACGGATAGAGCGTCACTCGCCCGCCGGGAAAGCCGGAGGTAAGTACG TCATGAGTAGCTACGTGCGTGTGATGGCGTGGGCATGTTTATGTGCGTGT ACGCGCGTGTCATAGTACCGACCGTGCAGACGGGGCTGGTGGTGGCCGCG GGATTGGGTAGCCCGCTAGTCTTCAATGGCGGGAAGTTGGTCTTTAATTT TGTGTGAAGTAAAGCGCAAGATTTGCAAGAACGCATGCTCATTCTCGGGA TCCAACGGGGTGGGCGGGGGAGGTTCGTGTTGTTTTTCTGGTTGTGTGTT TTGGACATGGCATCGACCGCCGCCCCTGCTGTCTTCCGTGTATCCATCTC TCTCTTTCGGAGGGCGTTGTCCATGCGATGTCGGAGTAACGAGCATGAAC ATTCCAGTATCTGAGCGTGTGATGTGGAGAACGGAAACGATTTCGTTGTC TACGATCGGTCGATTCGACGGCAGTGTTCGGGAGAGAGAAGGCGGATGGA TGAGAAGAGGGGGGCGTACGAGTGTTGATGCATCATGTAAGAGGGGCAGA GAGAGCCAAGGCGAACAACATGGACAGCTCATGCTGACGGCACCGACACC CATGCGATGGCCGTGTATTGTGTCGTTATTGCCAATAGTATTGCCAATAG TCTAGCTTCCAAGAACGAAAGGAGCATCCTATTAATAGACTACATCGCCA GTGCTTTACCTGGGCCCACCCCCACCCCCACCCCCACCATGCACAGTTGA AACTTCGTTTCGCGCTTGGTGCCGTACGAGCTTGACCCCGGTGACGCATG CTCCGCCCCAGCACTGGAAGTTGGATCGAATGTCTGCGGCATGCATGACT GCTGTGAGTCTCCCCCCGCCCCCCTCTTCCAACGCTCGGATCCCCCTCCC TTGTCTCTCCGCCCTTTGCGCGCCCGCCCCGTCACATCTCGGCCACCATC ACCACAACCATTGCCGGCCCAAAAAAAGTACGATGCGAACGGCCTCTTCG TGCGTCTCCGACAGCGAGGACGTCTCCTCCTCTGCGAAGGCCACCGCCGA CATCCGGGGAAGCAGCAGGGCGGTCAGGGTGGCGAGCAGGAAGCTGGAGG AAGGGTTTTACGGCGCCGGAGTCGACGAAGACGACGACGATGACGACGAC AGTTGTGATACCACGCCGACCGCGCCCACGCCGGCGGCGGTCGCGGCAGC GGTAGCAGCGGTGGCGACCTCGTTGTACGACGAGCCACCACCAGCGAACC TCTCACCCTCGCCGTCTCCGGGGAATCGGGGGGGAAAACGGGGAAACAGA GGAGAAACTTTTTTAAAAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGATGGTGGAGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8935:1317..6065-

>mRNA_E_fasciculatus_S2_contig8935.17032.1 ID=mRNA_E_fasciculatus_S2_contig8935.17032.1|Name=mRNA_E_fasciculatus_S2_contig8935.17032.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1086bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8935:1317..6065- (Ectocarpus fasciculatus EfasUO2)
ATGGCCGGCTCGGCCATGGTGTTTTCGTACGTGTCGGCCGTCAACCAGTC
GCTGTCGATTCTGTGGGGAGCGACCTACGCGCTGGACTGGTTCTGGATGT
CCCTGGTGCTGTTCTTCGTCACGCCCCTCGTGTTCGGGAGCTACATCTCC
CGCGCGCTCCGCCTGGCCGTGATTTTCCACCCGAGGGGGAAGCAGACCCT
GCCGTGGCTCATCCCGGAGCGGAACCACTTGTTCATCCTGTTGGCAGCGG
CTGTCGCGTTCTTGATCATCCCGATCTACCAGGACATGACCCTCCAAGTG
TGGGAGCTCATCCCGAAGCAGACGGGCGCCCTGACAACCGTCACTGTTGT
CCTCGCGGGAACGTTGGCGTGCATCTTCCCCTTTATCTGGCAAGAACCAA
TAGGCAGCGTGGACGACCTCTTCAACATCAGCAAGGAGCTCATGATCGTC
ACGATGTTGTTCCTCGTTCTTTCCGTCGGACTCGAGTGCGGGCTGTATTT
CGACGTGAGCAGTTGGACGGGGAGCAACCTCAATTTCTTCATAACGGCTG
CGGCGTTCTGGGTCAGCGTGGTGGGCCCGCTGCGTCGTCTCGCGGTTGAC
CCCCTGGCGGGGATCAAGCAGAGCCGCACGGATAGAGCGTCACTCGCCCG
CCGGGAAAGCCGGAGTACGATGCGAACGGCCTCTTCGTGCGTCTCCGACA
GCGAGGACGTCTCCTCCTCTGCGAAGGCCACCGCCGACATCCGGGGAAGC
AGCAGGGCGGTCAGGGTGGCGAGCAGGAAGCTGGAGGAAGGGTTTTACGG
CGCCGGAGTCGACGAAGACGACGACGATGACGACGACAGTTGTGATACCA
CGCCGACCGCGCCCACGCCGGCGGCGGTCGCGGCAGCGGTAGCAGCGGTG
GCGACCTCGTTGTACGACGAGCCACCACCAGCGAACCTCTCACCCTCGCC
GTCTCCGGGGAATCGGGGGGGAAAACGGGGAAACAGAGGAGAAACTTTTT
TAAAAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGAGGAGATGGTGGAGGCG
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