mRNA_E_fasciculatus_S2_contig8935.17032.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ9_ECTSI) HSP 1 Score: 399 bits (1025), Expect = 1.330e-135 Identity = 250/323 (77.40%), Postives = 271/323 (83.90%), Query Frame = 1
Query: 22 MAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLYDEPPPANLSPSPSPGNRG 990
MAGS+MV SY++AVNQSL ILWGATY+LDWFW+SL+LF V PLVFGSYI RALRLAVIFHPR KQ LPWLIPERNHLF L A AVA LIIPIYQDMTL+VWE+I KQ L + T+VLAGTLACIFPFI VDDLFNIS+EL+IVT+LFL+L++G++CGLYF+V WTG NLNFFITAA F VSVVGPLRRLAVDPLAG KQ T RA LARRE+RS EDVS SAKATADIRGSSRAVRVASRKLEEGFYG GVDEDXXXXXXXXXXXXXXXXXXXXXXXXX TSLYDEPPPANLSPSPSPG+ G
Sbjct: 1 MAGSSMVVSYLAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSAMAVALLIIPIYQDMTLEVWEVIAKQVDLLASATLVLAGTLACIFPFI-----RKVDDLFNISRELIIVTILFLILAIGIKCGLYFEVDMWTGGNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTGRAVLARRETRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGFYGGGVDEDXXXXXXXXXXXXXXXXXXXXXXXXX---TSLYDEPPPANLSPSPSPGDPG 303
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE) HSP 1 Score: 345 bits (885), Expect = 1.650e-112 Identity = 216/323 (66.87%), Postives = 238/323 (73.68%), Query Frame = 1
Query: 22 MAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLYDEPPPANLSPSPSPGNRG 990
MAGS+MV SYV+AVNQSL ILWGATY+LDWFW+SL+LF V PLVFGSYI RALRLAVIFHPR KQ LPWLIPERNHLF L A VAFLI+PIYQDMTL+VW+ VDDLFNIS+EL+IVT+LFL+L++G++CGLY++V WTG NLNFFITAA F VSVVGPLR LAVDPLAG KQ DRA LARR++RS EDVS SAKATADIRGSSRAVRVASRKLEEG YG GVDE+ XXXXXXXXXXXXXXX TSLYDEPPPANLSPSPSPG+ G
Sbjct: 1 MAGSSMVVSYVAAVNQSLFILWGATYSLDWFWISLLLFSVLPLVFGSYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSATVVAFLIVPIYQDMTLEVWK----------------------------------VDDLFNISRELIIVTILFLILAIGIKCGLYYEVDMWTGGNLNFFITAAVFGVSVVGPLRLLAVDPLAGSKQRCMDRAVLARRDTRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDENDDDGCDTTPXXXXXXXXXXXXXXXA---TSLYDEPPPANLSPSPSPGDPG 274
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 233 bits (593), Expect = 3.190e-68 Identity = 137/284 (48.24%), Postives = 187/284 (65.85%), Query Frame = 1
Query: 1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSV----GLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDED 840
RSA LV++ G ++ + V AVN S++++W + LDWFWMSL+LFF++P + GSYI RALRLAV+FHPR K+ LPWLIPERN++ +LL +V + IPIYQ+ TL+VWE+IPKQT LTT +V A TLACI+PFI +VDDLFNISKEL++VT+ + L+V E G ++ W G+N++ FI A F +S+V PLRRLA+DPLA K++ DR L+R ST+RTAS S S +A ++ +LEEG G +D+D
Sbjct: 3 RSAHLVMVEGVCVLLTMVVAVNGSINVVWDS--GLDWFWMSLLLFFISPALKGSYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIYQEYTLEVWEIIPKQTTILTTEALVFAVTLACIYPFI-----RNVDDLFNISKELLLVTVAIVCLAVVQKAAAEWGGVYE-QRWVGNNISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLSRTAPDSTVRTASGVSSGRSRDPSRIRANSEEEA----------RLEEGDLGGVLDKD 268
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ7_ECTSI) HSP 1 Score: 200 bits (508), Expect = 2.590e-59 Identity = 111/210 (52.86%), Postives = 147/210 (70.00%), Query Frame = 1
Query: 52 VSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLEC-GLYFDVSS--WTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLAR 672
++AVN +++I+W + LDWFW+SL+LFFV+P +FGSYI RALRLAV+FHP+ K+ LPWLIPERN++ +L+ A+ L IP+Y + TL+VWE+IPKQT L V++ A ACI+PFI +VDDLF+ISKEL IVT ++L+VG + G Y V W G+NL A F VSVV PLRRLA DPLA K++ DR L+R
Sbjct: 2 LAAVNGAINIVWDS--GLDWFWVSLLLFFVSPALFGSYICRALRLAVVFHPKAKRALPWLIPERNYVAVLMVASCGMLAIPLYHEYTLEVWEIIPKQTDILIWVSIAFAVVQACIYPFI-----RNVDDLFSISKELAIVTAAVILLAVGQKLEGDYGGVYERRWLGNNLFLLFAAVVFSVSVVDPLRRLAFDPLAATKRNYADRVLLSR 204
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI) HSP 1 Score: 206 bits (523), Expect = 3.410e-57 Identity = 118/234 (50.43%), Postives = 157/234 (67.09%), Query Frame = 1
Query: 1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLEC----GLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRST 690
RSA LV + G +++ S + VN + +I+W + LDWFW+SL+LFFV+P +FGSYI RALRLAV+F+PR K LPWLIPERN+L +LL A++ L IPIY + TL+VW+ IPKQT L VLA L CI+PFI +VDDLFNIS EL+ VT+ +V+++ E G F+ W SN++ A F +S+V PLRRLA+DPLA K++ DR L+R ES ST
Sbjct: 97 RSAHLVTLQGVSLLLSMLVTVNGATTIVWDS--GLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKSALPWLIPERNYLAVLLLASIGILAIPIYHEYTLEVWDAIPKQTSILKAQARVLAVMLVCIYPFI-----RNVDDLFNISTELITVTVTIVVVTIVQEVVDKWGGNFE-QRWLTSNISVVFVAVLFCISIVAPLRRLALDPLAATKRNYADRVLLSRTESHST 322
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE) HSP 1 Score: 196 bits (497), Expect = 5.270e-54 Identity = 121/242 (50.00%), Postives = 157/242 (64.88%), Query Frame = 1
Query: 1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFI--TAAAFWV----------SVVGPLRRLAVDPLAGIKQSRTDRASLARRESRST 690
RSA LV + G +++FS + VN + +I+W + LDWFW+SL+LFFV+P +FGSYI RALRLAV+F+PR K+ LPWLIPERN+L +LL A++ L IPIYQ+ TL+VW+ IPKQT L T VLA L CI+PFI +VDDLFNISKEL+ VT+ V++ E + S+ S L + T F SVV PLRRLA+DPLA K++ DR L+R ES ST
Sbjct: 19 RSAHLVTLQGVSLLFSMLVTVNDATTIVWDS--GLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKRALPWLIPERNYLAVLLLASIGILAIPIYQEYTLEVWDAIPKQTSILKTQARVLAVMLVCIYPFI-----RNVDDLFNISKELITVTVTIAVVTC--EAHSFVHRSTHVESCLQQHVPPTTKRFPYPMSPSNLSTRSVVAPLRRLALDPLAATKRNYADRVLLSRTESHST 251
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE) HSP 1 Score: 187 bits (474), Expect = 3.310e-50 Identity = 110/237 (46.41%), Postives = 150/237 (63.29%), Query Frame = 1
Query: 1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSS--WTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTAS 705
RSA LV++ G A + + + VN S +++W + DWFW+SL+LFF++P +FGSYI RALRLAV+FHPR K+ LPWLIPE N++ +LL A+V L IPIY + TL VW+ I KQT L VLA LACI+PFI +VDDLF+IS EL+IVT ++++ G ++ W +N++ F VS++ PLRRLA DPLA + + +R R E ST R AS
Sbjct: 86 RSAYLVMVGGVAGILTMLVTVNDSTTVVWDIGF--DWFWISLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLIPEHNYMVVLLVASVGMLAIPIYHEYTLGVWDAISKQTNILKIEARVLAVALACIYPFI-----RNVDDLFSISTELIIVTATIVLITSEEVDGQWWGPYERRWFANNMSVVFMIILFGVSIIAPLRRLASDPLAATRHNYANRVLPNRTEPHSTARRAS 315
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.190e-49 Identity = 106/224 (47.32%), Postives = 142/224 (63.39%), Query Frame = 1
Query: 1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSV-----GLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDR 657
RSA LV++ G A + + + VN + +++W + DWFW SL LFF++P +FG YI RALRLAV+FHPR K+ LPWLIPERN++ +LL A+V L IPIY + TL VW+ I KQT L VLA LACI+PFI +VDDLF+IS EL+IVT ++++ GL G Y W +NL+ F VS+V PLRRLA DP A +++ +R
Sbjct: 86 RSAYLVMVGGVAGILTMLVTVNDATTVIWDTGF--DWFWTSLFLFFISPALFGRYICRALRLAVVFHPRVKRALPWLIPERNYMVVLLVASVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFI-----RNVDDLFSISTELIIVTATIGLITIVQEIDGLWGGCY--ERRWLANNLSVLFMIVLFGVSIVAPLRRLASDPFAATRRNYANR 300
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI) HSP 1 Score: 151 bits (382), Expect = 7.440e-39 Identity = 79/152 (51.97%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 19 LMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVT 474
++ G A + + + VN + +++W + DWFW SL+LFF++P +FGSYI RALRLAV+FHPR K+ LPWL+PERN++ +LL ++V L IPIY + TL VW+ I KQT L VLA LACI+PFI +VDDLF+IS EL+IVT
Sbjct: 1 MVGGVAGILTMLVTVNDATTVIWDTGF--DWFWTSLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLVPERNYMVVLLVSSVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFI-----RNVDDLFSISTELIIVT 145
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.820e-28 Identity = 87/237 (36.71%), Postives = 126/237 (53.16%), Query Frame = 1
Query: 1 RSARLVLMAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISRALRLAVIFHPRGKQTLPWLIPERNHLFILLAAAVAFLIIPIYQDMTLQVWELIPKQTGALTTVTVVLAGTLACIFPFIWQEPIGSVDDLFNISKELMIVTMLFLVLSVGLEC-----GLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMR 696
RSA LV++ G + + + +N S++++W LD+FW+SL+LF V P + GSYI R LRLAV+FHPR K+ LPWLIP + + Y D L + A LAC FPFI +VDDLF+ISKE++IVT ++L++ G+Y W +++ A F VS+V PLRRLA DPLA + + +R L+R E +++R
Sbjct: 3 RSAYLVMVEGVCALLTMLVTLNSSINVVWDC--GLDYFWVSLLLFLVVPTLLGSYICRVLRLAVVFHPRAKRALPWLIPGGR-------SDAGY-----YPDDDLSAF-----------------AVALACTFPFI-----RNVDDLFSISKEIIIVTAAVVILAIEQNVVDKWGGVY--ERRWIDKSVSILFVAVLFGVSIVDPLRRLAFDPLAATQHNHANRILLSRTEPHNSVR 201 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8935.17032.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8935.17032.1 >prot_E_fasciculatus_S2_contig8935.17032.1 ID=prot_E_fasciculatus_S2_contig8935.17032.1|Name=mRNA_E_fasciculatus_S2_contig8935.17032.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=362bp MAGSAMVFSYVSAVNQSLSILWGATYALDWFWMSLVLFFVTPLVFGSYISback to top mRNA from alignment at E_fasciculatus_S2_contig8935:1317..6065- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8935.17032.1 ID=mRNA_E_fasciculatus_S2_contig8935.17032.1|Name=mRNA_E_fasciculatus_S2_contig8935.17032.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4749bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8935:1317..6065- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8935:1317..6065- >mRNA_E_fasciculatus_S2_contig8935.17032.1 ID=mRNA_E_fasciculatus_S2_contig8935.17032.1|Name=mRNA_E_fasciculatus_S2_contig8935.17032.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1086bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8935:1317..6065- (Ectocarpus fasciculatus EfasUO2)back to top |