mRNA_E_fasciculatus_S2_contig8930.17030.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8930.17030.1
Unique Name	mRNA_E_fasciculatus_S2_contig8930.17030.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8930.17030.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 1.390e-152
Identity = 216/230 (93.91%), Postives = 221/230 (96.09%), Query Frame = 1

Query:    1 MVDIRPANLSAARCQHDEMDEDHSTVTATASTSSYQSGGSYSSVADSHHYRQAGMGPAPAERFAPSQDHAGVQFSPTAPSFPGTPGPSESLMACHRYSRVVRVLAILDAIVVLCGASAFTPLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIEWVVVWVFLFTDIAASGLVYFFVVLLCRCSRAEVEHLRDPNTAWASAFFPLSVGATPFGGSPDD 690
            MVDIRPANLSAARCQHDEMDEDHSTVTAT STSSYQSGGSYSSVAD+HHYRQAGMGPA  ER APSQDH GVQFSP APSFPGTP PSESLMACHRYSRVVRVLAILDAI+VLCGASAFTPLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGI+WVVVWVFLFTD+AASGLVYFFVVLLCRCS AEVEHLRDPNTAWASAFFPLSVGATPF GSPD+
Sbjct:    1 MVDIRPANLSAARCQHDEMDEDHSTVTATPSTSSYQSGGSYSSVADTHHYRQAGMGPARTERLAPSQDHTGVQFSPPAPSFPGTPRPSESLMACHRYSRVVRVLAILDAIIVLCGASAFTPLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIKWVVVWVFLFTDVAASGLVYFFVVLLCRCSTAEVEHLRDPNTAWASAFFPLSVGATPFEGSPDN 230

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8930.17030.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAV0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-7
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 1

Query:  175 PAERFAPSQDHAGVQFSPTAPSFPGTPG------PSES-LMACHRYSRVVRVLAILDAIVVLCGASAFTPLILMI-WGPIAGYLASNFRLRAAFTFLF--YYGLRISWDIGWILSGGIEWVVVWVFLFT-DIAASGLVYFFVVLLCRCSRAEVEHLRDPNTAWASAFFPLSVGATPF 672
            P +  AP   +  + F P+ P  P   G      P E+ LM     ++ +R LA+ D ++++     F  L+L++ WGP++G++A   R   A+T+ +  YY LR+S  + ++  G   ++    FLF   +  + +++ F  +L   S AE+E LR+P   W+  +        PF
Sbjct:   62 PVQPGAPGTQYVAI-FPPSVPFDPADLGVAGFMAPHEAKLMEASSLAKTIRWLAVFDGLILVINCGYFPMLLLLLLWGPLSGWMAGT-RYSTAWTYAYCCYYLLRLSTYLSYVFEGYFWFI----FLFALSLYIARVIWRFAKVLDTLSPAEIEQLRNPTAVWSGQYRRQHQNQQPF 232

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8930.17030.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8930.17030.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	1.390e-152	93.91	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7...	[more]
Uncharacterized	1.020e-7	27.12	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8930	contig	E_fasciculatus_S2_contig8930:1299..4371 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	693
Hectar predicted targeting category	other localisation
Exons	6
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-10_005140.1
Cds size	693

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8930.17030.1	prot_E_fasciculatus_S2_contig8930.17030.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8930 1299..4371 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842547.1890674-CDS-E_fasciculatus_S2_contig8930:1298..1352	1696842547.1890674-CDS-E_fasciculatus_S2_contig8930:1298..1352	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8930 1299..1352 +
1696842547.2028399-CDS-E_fasciculatus_S2_contig8930:1607..1710	1696842547.2028399-CDS-E_fasciculatus_S2_contig8930:1607..1710	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8930 1608..1710 +
1696842547.214807-CDS-E_fasciculatus_S2_contig8930:2435..2525	1696842547.214807-CDS-E_fasciculatus_S2_contig8930:2435..2525	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8930 2436..2525 +
1696842547.2257485-CDS-E_fasciculatus_S2_contig8930:2861..2973	1696842547.2257485-CDS-E_fasciculatus_S2_contig8930:2861..2973	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8930 2862..2973 +
1696842547.237118-CDS-E_fasciculatus_S2_contig8930:3552..3696	1696842547.237118-CDS-E_fasciculatus_S2_contig8930:3552..3696	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8930 3553..3696 +
1696842547.2513363-CDS-E_fasciculatus_S2_contig8930:4181..4371	1696842547.2513363-CDS-E_fasciculatus_S2_contig8930:4181..4371	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8930 4182..4371 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8930:1299..4371+
coding sequence from alignment at E_fasciculatus_S2_contig8930:1299..4371+

protein sequence of mRNA_E_fasciculatus_S2_contig8930.17030.1

>prot_E_fasciculatus_S2_contig8930.17030.1 ID=prot_E_fasciculatus_S2_contig8930.17030.1|Name=mRNA_E_fasciculatus_S2_contig8930.17030.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp
MVDIRPANLSAARCQHDEMDEDHSTVTATASTSSYQSGGSYSSVADSHHY
RQAGMGPAPAERFAPSQDHAGVQFSPTAPSFPGTPGPSESLMACHRYSRV
VRVLAILDAIVVLCGASAFTPLILMIWGPIAGYLASNFRLRAAFTFLFYY
GLRISWDIGWILSGGIEWVVVWVFLFTDIAASGLVYFFVVLLCRCSRAEV
EHLRDPNTAWASAFFPLSVGATPFGGSPDD*

mRNA from alignment at E_fasciculatus_S2_contig8930:1299..4371+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8930.17030.1 ID=mRNA_E_fasciculatus_S2_contig8930.17030.1|Name=mRNA_E_fasciculatus_S2_contig8930.17030.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3073bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8930:1299..4371+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGACATCAGGCCTGCAAATCTGTCCGCAGCTCGATGTCAGCACGA
CGAGGTGAAAGGACGCGTCCAAGATTCGCCCCATGGCTTCCTCCTTCTGC
TGATTCTGTGTTGTTGCTGCTGTTAGGGTATCGGGGCAACAGGATTCCGT
TTGGGTTCAATGTGTGCGTCGAGCTCCATTCAAACTCTCTCACCAAAGCA
CCCATCCTACAAGCAGCAGTGGCATATATATGCAGACTGCTGAATGCTGA
CCTACCTCGCGGGATGCCTCTCTCTCGTGGATGCCACGTCCTGATCGGCA
TGCTCATAGATGGATGAAGACCATTCTACTGTGACGGCAACCGCGTCCAC
ATCATCGTACCAGAGCGGGGGGAGTTACAGCAGTGTTGCGGATTCCCACC
ACTATCGACAAGGTGTGGTATGTGGTATGACATCATCTACGTGTATGCAG
CAGCTGACTGCCGTGCATGGTCTAGACTACTTGTAGAAAATGCAGTTGAT
GCTCTGTTGACGGCCACGCTCTTGCACATTGGTATTCATGGAGTAGCGGA
AAGTGATTGCTGCAGTATGACCCTCACCACCCACCAACAGCATTGCCAGC
CCTTCTTGCATGTGGTACATGGTTTTGACAAACAAACGTCTTCCGGATCA
CGCAAGCAAGCAGGGAATTGGGTGTCGACAGCAGTAGTAGACTATACTTG
AAGTACATGGCGGGCACTTTTGCCGACAGGTCGTGGTTGTGTGGAGAAAG
GTACACCCGGCCAAGAGGGCCGAGAGAGATGTATTGAACCTGAGTCGGTG
AAAGTTGGCGTTGAAGTGCATCACGCGCAGAGGGCACCGCCACATTCATC
CCGCCAGCAATTAGAACAGCCCAGATGAGTATCTACAGCAGTAGTCTACA
GCCCAAAAGCGCCGAGAAAACCAAGCAGAACAAATGTTGTCCCACAATCT
ACCGAGGCTACAATCTCCGACCCAATTTCCATCCATCGTACTCGCTCCGA
GCGTATCTCACATTGTCACCGTTGCGCAAAGATAATGCTAACAAGCTTGT
GCGTTTTCGGGCCGGTGAGTCGCACGCCCTCTCCACTGAATGATACTGTC
GTTGTCACCCACTCTTCTTGCGGCCACTACTTTTCAGCGGGAATGGGTCC
TGCCCCTGCGGAACGATTCGCACCTAGTCAAGACCACGCCGGCGTTCAGT
TCTCGCCGACCGCTCCCAGCTTCCCCGGTGAGTGTGGTGCTGCTTGAAGC
ATGGGCCTCCTGTACATCGTACTCTCGACTTGCAACCCGCGGAATGCTGT
TTTATTCGATGTTAAATAACGTGGAGATCCCCTTCAATACCTTCAATAAA
TGGTACAAATCAAGTCTATCGAGGACGATTACAGTGTAGTAGCCTATTTT
CAAGTTGGCGTCGTTAACCACGACAAAGCCCGGCCGGCCAACGGGACGGG
AAGGCAGCCCGCAAATGAATTCCACACATTCCGTGCGTTTGGTTGTCCGT
CCGCCGTTGCCTGGTCGTTGAAATGTTAATGTTGTTCTGTTTCCTGCTTT
CCCGTGGCATCAGGAACGCCGGGACCGAGCGAGTCCCTGATGGCCTGCCA
CCGATACTCGCGAGTGGTGCGGGTGCTGGCCATTCTCGATGCGATCGTGG
TTTTGTGCGGCGCTTCCGCCTTCACGTGAGAAACTGACTGAGATGCTCTT
TGGTCGCAGTGAGGAAAAGGTTTCGAGTGGCTTTGTTTGCCGCCCTGGTC
GGCTGTAGATCACCGATCGCGCCTCACGTGTGGGACGTACGTAACTGTAC
CACCTCTTCGTATGTTCAGTTCGCTTTTTGTTGTGTATGCAGCGCTACAC
GGATCCACAGAGTATCCGTCTATCGGGAGCAGAGTTCAAAGGGTTCGACG
CGAGGGGGAATCACGCCCTGTTTTGCAGGGGTCTAGCGTCACGGGCGTAG
ATTGTGCCATCTCGCGTTGCCTACTTGGCTGTGATGAACATCGATCCTCC
GCCAAGTAGGGGTTCGCAGGCATCGTAGAGAAGGAGACCTAAGGAGATTG
TCAGGCGGGCCGATGTACCGCTACCCACCCTGGTGCAACGACTACATCAT
ACCATCGACCGTTACCCTCAAACTAAATGTCATGGGATGTCATGGGTCTA
TGGAGTTTGACGGACGTTTTTGGCACGTACCTTTCAAATTCGGCCGCACT
ACTGTCTTCTCCAAATGCTGCACGCTCGGCACGCTCGGCACCACTCTCGC
TCAGGCCTTTAATTCTCATGATATGGGGGCCTATCGCGGGTTACCTCGCG
TCCAACTTCCGATTAAGAGCAGCCTTCACGTTCCTCTTCTACTACGGCCT
GAGGATTTCTTGGGACATCGGATGGATACTTAGCGGCGGGATAGAGTGGT
GAGAGGCTACCCAATCGAGCGCATGTATCTACTATTATACCCATGAACCC
GACCACTGGTGACGTACAGCACCAGCGATTGGCAGGCTGTAACATGCGTA
CGCACGCGCGCACACAACCTGTTGTTTCTTGATGTGCGCTGCCTGTAGAG
GCGTGTATCCCGTGGTTGCGGCAGCGGCGTTCGTTGCTTGACATTCTAGC
CGAATCTATTATTCTTCTTCTTCTTCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGAGGACGTTCTTACGCCATTCCCCCGACCGATTAAGCACA
GACCCCCGTTCTATCGACTCGGAAAACCCATTCGGTCAGCTTCCCGCGCT
CCTTTCTCGCTTGCACGGCGGTGATATCCTTCCCAGAAATCTCAACTCTT
TCTTTTTTCGTGCGCTGTTTTTCGATCGACCTGTCACGGTACGTGAACCT
CACGGCACCAACGGCGGCGACACCCCCCGGCAGGGTTGTTGTGTGGGTGT
TTCTGTTCACCGATATAGCCGCATCGGGGCTGGTGTACTTCTTCGTGGTG
CTTCTTTGCCGATGTTCCCGTGCTGAGGTGGAGCATCTGCGAGATCCCAA
CACCGCGTGGGCGTCGGCGTTCTTCCCGCTCTCCGTCGGCGCCACGCCAT
TCGGGGGATCTCCGGACGACTAG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8930:1299..4371+

>mRNA_E_fasciculatus_S2_contig8930.17030.1 ID=mRNA_E_fasciculatus_S2_contig8930.17030.1|Name=mRNA_E_fasciculatus_S2_contig8930.17030.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8930:1299..4371+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGACATCAGGCCTGCAAATCTGTCCGCAGCTCGATGTCAGCACGA
CGAGATGGATGAAGACCATTCTACTGTGACGGCAACCGCGTCCACATCAT
CGTACCAGAGCGGGGGGAGTTACAGCAGTGTTGCGGATTCCCACCACTAT
CGACAAGCGGGAATGGGTCCTGCCCCTGCGGAACGATTCGCACCTAGTCA
AGACCACGCCGGCGTTCAGTTCTCGCCGACCGCTCCCAGCTTCCCCGGAA
CGCCGGGACCGAGCGAGTCCCTGATGGCCTGCCACCGATACTCGCGAGTG
GTGCGGGTGCTGGCCATTCTCGATGCGATCGTGGTTTTGTGCGGCGCTTC
CGCCTTCACGCCTTTAATTCTCATGATATGGGGGCCTATCGCGGGTTACC
TCGCGTCCAACTTCCGATTAAGAGCAGCCTTCACGTTCCTCTTCTACTAC
GGCCTGAGGATTTCTTGGGACATCGGATGGATACTTAGCGGCGGGATAGA
GTGGGTTGTTGTGTGGGTGTTTCTGTTCACCGATATAGCCGCATCGGGGC
TGGTGTACTTCTTCGTGGTGCTTCTTTGCCGATGTTCCCGTGCTGAGGTG
GAGCATCTGCGAGATCCCAACACCGCGTGGGCGTCGGCGTTCTTCCCGCT
CTCCGTCGGCGCCACGCCATTCGGGGGATCTCCGGACGACTAG