mRNA_E_fasciculatus_S2_contig8930.17029.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8930.17029.1
Unique NamemRNA_E_fasciculatus_S2_contig8930.17029.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.530e-22
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDAA 150
            KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT GDAA
Sbjct:   10 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAA 59          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: SAP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.010e-20
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDAA 150
            KVSELK ELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT GDAA
Sbjct:   10 KVSELKTELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAA 59          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: heterogeneous (nuclear ribonucleoprotein U-like protein 1 isoform X1 n=2 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4CA98)

HSP 1 Score: 54.3 bits (129), Expect = 3.260e-7
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDA 147
            KV EL+AELASR LD KGNKA L +RLQ ALD+E  G  S  TP  G+A
Sbjct:    7 KVVELRAELASRGLDTKGNKAALVERLQEALDKETGGVPSEKTPDNGNA 55          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G614_PHATC)

HSP 1 Score: 53.1 bits (126), Expect = 5.170e-7
Identity = 28/45 (62.22%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT 135
            KV+EL+ EL  R L V GNK DL  RLQA LDEEEFG I  P  T
Sbjct:   10 KVAELRTELERRGLPVSGNKPDLINRLQARLDEEEFGLIDAPATT 54          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z395_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.130e-6
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFG 111
            KV++LKAELA R+LD  G K DL QRLQAALDEEEFG
Sbjct:   10 KVADLKAELAKRNLDSTGLKQDLIQRLQAALDEEEFG 46          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: Hypothetical (protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ56_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.780e-6
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGA--ISMPTPTAGD 144
            KV+EL+A LASR L   G KADL+ RLQA LDEEEFG   ++ P P+ G+
Sbjct:   10 KVAELRAALASRGLPSDGLKADLSNRLQARLDEEEFGMDEVTPPPPSTGE 59          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: Hypothetical (protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3T5_CYCTE)

HSP 1 Score: 50.4 bits (119), Expect = 7.080e-6
Identity = 27/45 (60.00%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT 135
            KVSEL+A L  R L  +G KADL  RLQA LDEEEFG +  P  T
Sbjct:   33 KVSELRAALQKRGLSTEGLKADLVNRLQARLDEEEFGMVVAPQST 77          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLW8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.240e-6
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFG 111
            KV +LK ELA R+LD  G KADL QRLQ ALD+EEFG
Sbjct:   16 KVQDLKDELAKRNLDTNGLKADLQQRLQTALDDEEFG 52          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: SAP (domain-containing protein n=2 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9C943_9AVES)

HSP 1 Score: 47.0 bits (110), Expect = 1.130e-5
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTP 132
            KVSELK EL  R L  KG KADL +RLQAALD+EE G      P
Sbjct:   12 KVSELKEELKKRRLSDKGLKADLMERLQAALDQEEAGXXXXVNP 55          
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Match: Uncharacterized (protein n=3 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RLX3_CIMLE)

HSP 1 Score: 49.3 bits (116), Expect = 1.920e-5
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGA-----ISMPTPT 135
            KV EL+AEL+SR LD KGNKA L +RL+ AL+EEE G+     +S P  T
Sbjct:    7 KVVELRAELSSRGLDTKGNKAALVERLEKALEEEEKGSDGKHEVSQPAQT 56          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8930.17029.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SAP8.530e-2298.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SAP2.010e-2096.00domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
heterogeneous3.260e-763.27nuclear ribonucleoprotein U-like protein 1 isoform... [more]
Predicted5.170e-762.22protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]
SAP1.130e-675.68domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical3.780e-658.00protein n=2 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical7.080e-660.00protein n=2 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Hypothetical7.240e-670.27protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
SAP1.130e-561.36domain-containing protein n=2 Tax=Galloanserae Tax... [more]
Uncharacterized1.920e-556.00protein n=3 Tax=Cimex lectularius TaxID=79782 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8930contigE_fasciculatus_S2_contig8930:266..415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842547.137494-CDS-E_fasciculatus_S2_contig8930:265..4151696842547.137494-CDS-E_fasciculatus_S2_contig8930:265..415Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8930 266..415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8930.17029.1prot_E_fasciculatus_S2_contig8930.17029.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8930 266..415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8930.17029.1

>prot_E_fasciculatus_S2_contig8930.17029.1 ID=prot_E_fasciculatus_S2_contig8930.17029.1|Name=mRNA_E_fasciculatus_S2_contig8930.17029.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=50bp
KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDAA
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mRNA from alignment at E_fasciculatus_S2_contig8930:266..415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8930.17029.1 ID=mRNA_E_fasciculatus_S2_contig8930.17029.1|Name=mRNA_E_fasciculatus_S2_contig8930.17029.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=150bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8930:266..415- (Ectocarpus fasciculatus EfasUO2)
AAGGTTTCCGAGCTGAAAGCCGAGCTGGCAAGCAGGAGTCTGGATGTCAA GGGCAACAAGGCAGACTTGGCCCAGCGGCTGCAGGCGGCCCTCGACGAGG AGGAGTTTGGCGCCATCAGCATGCCTACACCGACCGCCGGCGATGCTGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8930:266..415-

>mRNA_E_fasciculatus_S2_contig8930.17029.1 ID=mRNA_E_fasciculatus_S2_contig8930.17029.1|Name=mRNA_E_fasciculatus_S2_contig8930.17029.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=150bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8930:266..415- (Ectocarpus fasciculatus EfasUO2)
AAGGTTTCCGAGCTGAAAGCCGAGCTGGCAAGCAGGAGTCTGGATGTCAA
GGGCAACAAGGCAGACTTGGCCCAGCGGCTGCAGGCGGCCCTCGACGAGG
AGGAGTTTGGCGCCATCAGCATGCCTACACCGACCGCCGGCGATGCTGCA
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