mRNA_E_fasciculatus_S2_contig8925.17025.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8925.17025.1
Unique NamemRNA_E_fasciculatus_S2_contig8925.17025.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A7S0ICQ7_MICPS)

HSP 1 Score: 201 bits (512), Expect = 4.490e-65
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:   34 KNTTSHNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            K+T S+NMSGRGKGGK LGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    5 KHTNSNNMSGRGKGGKXLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 114
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.520e-65
Identity = 106/113 (93.81%), Postives = 107/113 (94.69%), Query Frame = 1 
Query:   25 FSKKNTTSHNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            F   N  + NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 FVSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENA7_NOCCA)

HSP 1 Score: 200 bits (509), Expect = 2.160e-64
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:   19 LLFSKKNTTSHNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            L FS+K      MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 LSFSRKFKFPEKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLB0_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.060e-64
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:   19 LLFSKKNTTSHNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            LL S+ N T+  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    7 LLPSRDNLTA--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 119
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4HYH3_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.480e-64
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   37 NTTSHNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            NT  + MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   15 NTNQNIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 123
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.690e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   55 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 198 bits (504), Expect = 5.250e-64
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   55 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3UKU6_LOXAF)

HSP 1 Score: 198 bits (504), Expect = 5.420e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:   52 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 104
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A0B6YRU8_9EUPU)

HSP 1 Score: 198 bits (504), Expect = 5.770e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:   52 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Match: Histone (H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 198 bits (504), Expect = 6.560e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:   52 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 363
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    7 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8925.17025.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Histone4.490e-6595.45H4 n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A7S0I... [more]
Histone4.520e-6593.81H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V... [more]
Histone2.160e-6491.30H4 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=1... [more]
Histone3.060e-6493.04H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1... [more]
Histone3.480e-6495.41H4 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4... [more]
Histone3.690e-64100.00H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024... [more]
Histone5.250e-6499.03H4 n=13 Tax=cellular organisms TaxID=131567 RepID=... [more]
Histone5.420e-6498.08H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3UKU6_LOXA... [more]
Histone5.770e-6498.08H4 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=... [more]
Histone6.560e-6498.08H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEE... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8925contigE_fasciculatus_S2_contig8925:5014..5379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score202.6
Seed ortholog evalue1.1e-49
Seed eggNOG ortholog2880.D7G188
Model size366
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
Cds size366
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842546.7322073-CDS-E_fasciculatus_S2_contig8925:5013..53791696842546.7322073-CDS-E_fasciculatus_S2_contig8925:5013..5379Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8925 5014..5379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8925.17025.1prot_E_fasciculatus_S2_contig8925.17025.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8925 5014..5379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8925.17025.1

>prot_E_fasciculatus_S2_contig8925.17025.1 ID=prot_E_fasciculatus_S2_contig8925.17025.1|Name=mRNA_E_fasciculatus_S2_contig8925.17025.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp
AHNNNSLLFSKKNTTSHNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITK
PAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTV
TAMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at E_fasciculatus_S2_contig8925:5014..5379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8925.17025.1 ID=mRNA_E_fasciculatus_S2_contig8925.17025.1|Name=mRNA_E_fasciculatus_S2_contig8925.17025.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8925:5014..5379+ (Ectocarpus fasciculatus EfasUO2)
GCTCACAACAACAACTCTCTCCTCTTCTCCAAGAAGAACACTACCTCACA
CAACATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGCG
CCAAGCGCCACCGCAAGGTACTTCGCGACAACATCCAGGGCATCACCAAG
CCCGCCATCCGCCGCCTGGCTCGCCGTGGCGGTGTAAAGCGTATCTCGGG
ACTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTCCTCGAGAACG
TCATCCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTG
ACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGCCGCACCCTCTA
CGGTTTCGGCGGCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8925:5014..5379+

>mRNA_E_fasciculatus_S2_contig8925.17025.1 ID=mRNA_E_fasciculatus_S2_contig8925.17025.1|Name=mRNA_E_fasciculatus_S2_contig8925.17025.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8925:5014..5379+ (Ectocarpus fasciculatus EfasUO2)
GCTCACAACAACAACTCTCTCCTCTTCTCCAAGAAGAACACTACCTCACA
CAACATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGCG
CCAAGCGCCACCGCAAGGTACTTCGCGACAACATCCAGGGCATCACCAAG
CCCGCCATCCGCCGCCTGGCTCGCCGTGGCGGTGTAAAGCGTATCTCGGG
ACTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTCCTCGAGAACG
TCATCCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTG
ACGGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGCCGCACCCTCTA
CGGTTTCGGCGGCTAA
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