mRNA_E_fasciculatus_S2_contig8919.17019.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8919.17019.1
Unique NamemRNA_E_fasciculatus_S2_contig8919.17019.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIJ3_9PHAE)

HSP 1 Score: 509 bits (1310), Expect = 7.740e-175
Identity = 279/336 (83.04%), Postives = 293/336 (87.20%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFGDGGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADG--GDAAS--AAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGE----EEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSLR 1044
            MDVK+RTHEFSFTFGD GDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCG+LASKLCTGG VVITDGG+EFT+SAMDALR NL++NSCNLLA SPARNG+NAA G  GDAA+  AAAAG GA+VALEKLTWGEH AFLERNGGG DRT   VND D+   RGGFDFVVAADVIYEEEGVSPLL TVVDILRLRAGERSD++H DHC S S  AV      EEQ PPQ  S  P  SSSLRCQAS+P A PSL PAP ESTFLLAFARRNISIERVL EAE+LGLAWRVPDDFEPASASENIYLMSLR
Sbjct:   47 MDVKKRTHEFSFTFGDDGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGILASKLCTGGTVVITDGGEEFTNSAMDALRANLIKNSCNLLAHSPARNGSNAAVGCGGDAAAVGAAAAGRGARVALEKLTWGEHEAFLERNGGGSDRTTDGVNDGDN---RGGFDFVVAADVIYEEEGVSPLLRTVVDILRLRAGERSDSKHPDHCPSPSHEAVAPKDETEEQDPPQPESSGPASSSSLRCQASAPPALPSLVPAPTESTFLLAFARRNISIERVLGEAESLGLAWRVPDDFEPASASENIYLMSLR 379          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Putative (methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7F5_9STRA)

HSP 1 Score: 148 bits (373), Expect = 8.260e-37
Identity = 97/228 (42.54%), Postives = 127/228 (55.70%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFGDG------GDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGER 726
            MD   R   F+F F         G  + V + L+GV+PELGQTLASTGLTVW AA+ +A +++  R   A + V+ELGAGLGLCG+L +KL  GG+VV+TDGGDEFTD A+ AL   + RN                     + +AAA     + A+E+LTWG+H AFL+ +                   R GFD V+AADVIYE E V PLL TV  +L+ +   R
Sbjct:   46 MDTIPRNENFTFNFTSDAPQTQPGAGDAVTVELSGVSPELGQTLASTGLTVWTAARHLAHYLFHIRDQIAARTVIELGAGLGLCGILCAKL--GGSVVVTDGGDEFTDEALGALVEQVERNR--------------------SVTAAAF----ECAVERLTWGDHDAFLKAH-------------------REGFDVVIAADVIYEAEAVVPLLSTVTALLQAKPRAR 228          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Nicotinamide (N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPS1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.280e-25
Identity = 96/341 (28.15%), Postives = 140/341 (41.06%), Query Frame = 1
Query:   67 VKERTHEFSFTFG---DGGDDEQVCIA--LAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWF-----AGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSLR*RGRG 1059
            V +R   F + +G   +G D    C+   L G   ELGQ L  TGLT+WRA +++ R++WE+R          +R++ELG GLGLCG++A++L   G VV+TDG           +  N ++N C                               VA   L WGE+   +                    E + GFD V+AADVIYEE+ + PLL TV     LR G+                                                         ++ FLL++ARRN+SI+RVL  A ++GL   V D F  ++  E++Y M L+ +  G
Sbjct:   40 VMDRDECFEYVYGAAREGTDKVHDCVRVRLHGWKKELGQQLECTGLTMWRAGEDLGRYLWENRAMLFKQGQGRQRILELGCGLGLCGLVAAQLNPKGVVVLTDGDALTMQKVCRNIDENSLKNRC------------------------------CVAARTLQWGENKKIIS-------------------EFKEGFDLVLAADVIYEEKAIGPLLSTVT--ATLRKGQ---------------------------------------------------------DALFLLSYARRNVSIDRVLAAASSMGLTCEVDDKFSCSAEGEHVYRMRLQRKEEG 272          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BI17_HYAAE)

HSP 1 Score: 111 bits (278), Expect = 1.260e-23
Identity = 100/330 (30.30%), Postives = 135/330 (40.91%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFG---DGGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSL 1041
            +D++ +   F F FG   +GG+   + I L G+  ++GQTL STGLT+WRA   ++ +M+EHR  FAGK V+ELG+GLGL G+LAS L T   VVITDG D+  +  +   + N V                                  +V   KL WG     L+            VND+        FD V+ ADVIYE+E V+ L  T   +L+                                     PG     RC                 S FLLA+ +RN+SI+ VLE A + G  W  P         E IY   L
Sbjct:   75 LDIEPKEDSFEFKFGSTENGGEAAPIFIRLNGLRRDIGQTLQSTGLTLWRAGDFLSSYMYEHRGRFAGKSVIELGSGLGLIGILASYL-TDVQVVITDGDDDTIELLVANCQLNKVEE--------------------------------RVQCRKLLWG---VDLDH-----------VNDK--------FDIVLGADVIYEQEHVASLFETAKHLLK-------------------------------------PG-----RCSVDG--------SCKAASEFLLAYTKRNVSIDYVLETATSFGFEWEEP------LTDEGIYTFRL 293          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Lysine (methyltransferase n=16 Tax=Phytophthora TaxID=4783 RepID=A0A833WMX4_PHYIN)

HSP 1 Score: 110 bits (275), Expect = 1.770e-23
Identity = 100/329 (30.40%), Postives = 140/329 (42.55%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFGDGGDDE--QVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSL 1041
            +D++ +   F F FG  GD+E  ++ I L G+  ++GQTL STGLT+WRA   ++ +M++ R  FAGK ++ELG+GLGL G+LAS L T   VVITDG D+  +         LV N C L                        G G +V   KL WG                  D++  +D+     FD V+ AD+IYE+E V  L  T   +L+   G RS         +   AA                                         S FLLA+ +RN+SI+ VL+ A+  G  W  P +       E IY   L
Sbjct:   48 LDIEPKEDSFEFKFGKNGDEEDAEITIRLNGLRRDIGQTLQSTGLTLWRAGDFLSEYMYQDRGRFAGKSIIELGSGLGLIGILASYL-TDKKVVITDGDDDTIEL--------LVAN-CKLN-----------------------GVGDRVECRKLLWG-----------------VDLHQIEDK-----FDVVLGADIIYEQEHVVSLFKTAKYLLK--PGRRS-------VGNGGKAA-----------------------------------------SEFLLAYTKRNVSIDYVLDTAKGFGFEWEEPTN------DEGIYTFRL 265          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF07_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.100e-23
Identity = 100/330 (30.30%), Postives = 136/330 (41.21%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFG--DGGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSLR 1044
            +D++ +   F F FG  D  +D +V I L G+  ++GQTL STGLT+WRA   ++ +M+ +R  F GK VVELG+GLGLCG+LAS L T   VVITDG D+  +         LV N C L         N+ AD              +V   KL WG     ++                        FD V+ AD+IYE+E V  L  T   +LR   G  S             AA                                         S FLLA+ +RN+SI+ VL+ A + G  W  P      +  E +Y   L+
Sbjct:   47 LDIEPKEDSFVFKFGKTDDAEDAEVTIRLNGLRRDIGQTLQSTGLTLWRAGDFLSDYMYANRATFVGKSVVELGSGLGLCGILASYL-TDKRVVITDGDDDTVEL--------LVAN-CKL---------NDVAD--------------KVECRKLLWGVDLEQIQHK----------------------FDIVLGADIIYEQEHVVSLFQTAQYLLR--PGHTS-------VEGGGQAA-----------------------------------------SVFLLAYTKRNVSIDYVLDTATSFGFEWEEP------TTDEGVYTYRLK 265          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YRN5_PHYSP)

HSP 1 Score: 107 bits (266), Expect = 2.850e-22
Identity = 96/329 (29.18%), Postives = 137/329 (41.64%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFGD--GGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSL 1041
            +DV+ R   F F FG    G D ++ I L G+  ++GQTL STGLT+WRA   ++ FM+++R  FAGK V+ELG+GLGL G+LAS L T   V+ITDG D+  +  +   + N V +                                +V  +KL WG                  D++   D+     FD ++ AD+IYE+E V  L  T   +L+   G RS  +          AA                                         S FLLA+ +RN+SI+ VL  A++ G  W  P +       E IY   L
Sbjct:   48 LDVEPREDSFEFKFGQTQDGADAEITIRLNGLRRDIGQTLQSTGLTLWRAGDFLSDFMYQNRGRFAGKSVIELGSGLGLIGILASYL-TDEQVLITDGDDDTIELLVANCKLNEVED--------------------------------RVQCQKLLWG-----------------VDLDKIQDK-----FDIILGADIIYEQEHVVSLFETAKYLLK--PGRRSGED-------GGKAA-----------------------------------------SEFLLAYTKRNVSIDYVLNTAKSFGFEWEEPTN------DEGIYTYRL 265          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJ79_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.740e-22
Identity = 96/332 (28.92%), Postives = 136/332 (40.96%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFGDGGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLC---TGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDF-EPASASENIYLMSLR 1044
             ++K+R   F  ++     + +    L G+  ELGQTL STGLT+WRAA+ + +F+ ++  +F GK + ELGAGLGL  VL  KL    +GG++VITD GDE T   +  L  N V N C   +                                L WGE+  FL           +   D+        F+ V+AADVIYE+  V PLL TV  ILR                                                              +  F+LAFARRN+SI++V   AE  GL WR+ D+  E  +  E ++  + +
Sbjct:   52 FEIKDRDDIFKMSYASKDGERKTEFELKGIKKELGQTLDSTGLTIWRAAEHLCQFIIDNPPFFRGKTICELGAGLGLVAVLIEKLGYVESGGSLVITD-GDEPT---LQLLIENKVDNECFFESS------------------------------YLYWGENEDFL-----------SSYPDK--------FEVVIAADVIYEDCQVEPLLDTVAAILR-------------------------------------------------------------PDGEFILAFARRNVSIDKVHRAAEQRGLEWRIVDEHAEGVAGVEPVFAYTWK 269          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTL6_BRELC)

HSP 1 Score: 111 bits (277), Expect = 9.390e-22
Identity = 97/329 (29.48%), Postives = 140/329 (42.55%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFGDGGD--DEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSL 1041
            +D++ +   F F F   GD  D ++ I L G+  ++GQTL STGLT+WRA   M+ FM++ R  F GK ++ELG+GLGL  +LAS L T   VV TDG D+  +         L+R +C L          N  +G             +V   KL WG                  ++++ DD+     FD V+ ADVIYE+E V  L  T   +++                                                  PS    LS + + S FLLA+ +RN+SI+ VL+ A+N G  W+ P +       E IY   L
Sbjct:  770 LDIEPKEDSFEFKFCKNGDKADAEIIIRLNGLRRDIGQTLQSTGLTLWRAGDFMSEFMYQDRSRFTGKSIIELGSGLGLISILASHL-TNKQVVATDGDDDTIE---------LLRANCKL----------NGVEG-------------RVQCRKLLWG-----------------VNLDEFDDK-----FDIVLGADVIYEQEHVVSLFKTAKHLMK--------------------------------------------------PSYQSRLSVSKIASEFLLAYTKRNVSIDYVLDTAKNFGFEWKSPIN------DEGIYTFYL 987          
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEV1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.760e-22
Identity = 96/327 (29.36%), Postives = 137/327 (41.90%), Query Frame = 1
Query:   61 MDVKERTHEFSFTFGDGGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEFTDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVALEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYEEEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQXXSPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEAENLGLAWRVPDDFEPASASENIYLMSL 1041
            +D++ +   F F FG    + ++ I L G+  ++GQTL STGLT+WRA   ++ +M ++R  FAGK ++ELG+GLGL G+LAS L T   VVITDG D+  +         L+  +C L         N   D              +V   KL WG                  D++  +D+     FD V+ AD+IYE+E V  L  T   +L+           R    SA  AA                                         S FLLA+ +RN+SI+ VL+ A+N G  W  P +       E IY   L
Sbjct:   50 LDIEPKEDSFEFKFGTSKGEAEIIIRLNGLRRDIGQTLQSTGLTLWRAGDFLSDYMSQNRGRFAGKSIIELGSGLGLVGILASYL-TDQHVVITDGDDDTIE---------LLTANCQL---------NKVED--------------RVQCRKLLWG-----------------IDLDQIEDK-----FDIVLGADIIYEQEHVVSLFETAKYLLKPG---------RQLVESADKAA-----------------------------------------SEFLLAYTKRNVSIDYVLDTAKNFGFEWDEPIN------DEGIYTFRL 265          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8919.17019.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.740e-17583.04protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Putative8.260e-3742.54methyltransferase-domain-containing protein n=1 Ta... [more]
Nicotinamide1.280e-2528.15N-methyltransferase, putative n=1 Tax=Nannochlorop... [more]
Uncharacterized1.260e-2330.30protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Lysine1.770e-2330.40methyltransferase n=16 Tax=Phytophthora TaxID=4783... [more]
Uncharacterized6.100e-2330.30protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized2.850e-2229.18protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YR... [more]
Hypothetical5.740e-2228.92protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Uncharacterized9.390e-2229.48protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Uncharacterized9.760e-2229.36protein n=1 Tax=Peronospora effusa TaxID=542832 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8919contigE_fasciculatus_S2_contig8919:1330..5354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score487.3
Seed ortholog evalue5.8e-135
Seed eggNOG ortholog2880.D8LKR9
Model size1767
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2497@1,KOG2497@2759
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-07_004540.1
Cds size987
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8919.17019.1prot_E_fasciculatus_S2_contig8919.17019.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8919 1390..4634 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842546.0956485-UTR-E_fasciculatus_S2_contig8919:1329..13891696842546.0956485-UTR-E_fasciculatus_S2_contig8919:1329..1389Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8919 1330..1389 +
1696842546.1658952-UTR-E_fasciculatus_S2_contig8919:4634..53541696842546.1658952-UTR-E_fasciculatus_S2_contig8919:4634..5354Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8919 4635..5354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842546.1116152-CDS-E_fasciculatus_S2_contig8919:1389..14551696842546.1116152-CDS-E_fasciculatus_S2_contig8919:1389..1455Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8919 1390..1455 +
1696842546.123816-CDS-E_fasciculatus_S2_contig8919:1939..20521696842546.123816-CDS-E_fasciculatus_S2_contig8919:1939..2052Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8919 1940..2052 +
1696842546.1343052-CDS-E_fasciculatus_S2_contig8919:2520..26111696842546.1343052-CDS-E_fasciculatus_S2_contig8919:2520..2611Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8919 2521..2611 +
1696842546.144756-CDS-E_fasciculatus_S2_contig8919:3056..33811696842546.144756-CDS-E_fasciculatus_S2_contig8919:3056..3381Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8919 3057..3381 +
1696842546.1552038-CDS-E_fasciculatus_S2_contig8919:4242..46341696842546.1552038-CDS-E_fasciculatus_S2_contig8919:4242..4634Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8919 4243..4634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8919.17019.1

>prot_E_fasciculatus_S2_contig8919.17019.1 ID=prot_E_fasciculatus_S2_contig8919.17019.1|Name=mRNA_E_fasciculatus_S2_contig8919.17019.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=329bp
MDVKERTHEFSFTFGDGGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQ
EMARFMWEHRRWFAGKRVVELGAGLGLCGVLASKLCTGGAVVITDGGDEF
TDSAMDALRTNLVRNSCNLLAQSPARNGNNAADGGDAASAAAAGSGAQVA
LEKLTWGEHGAFLERNGGGCDRTAADVNDRDDQEGRGGFDFVVAADVIYE
EEGVSPLLHTVVDILRLRAGERSDNEHRDHCHSASPAAVGEEEQQPPQPE
SPEPGPSSSLRCQASSPSAPPSLSPAPVESTFLLAFARRNISIERVLEEA
ENLGLAWRVPDDFEPASASENIYLMSLR*
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mRNA from alignment at E_fasciculatus_S2_contig8919:1330..5354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8919.17019.1 ID=mRNA_E_fasciculatus_S2_contig8919.17019.1|Name=mRNA_E_fasciculatus_S2_contig8919.17019.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4025bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8919:1330..5354+ (Ectocarpus fasciculatus EfasUO2)
GTAGGTCCGGAAGGAGACGGCGACGGCGATGTCGACGTGCGGCTCCAGGT GCAGGAGCGTATGGATGTCAAGGAGAGGACGCACGAGTTTTCCTTCACTT TTGGGGACGGCGGTGACGACGAGCAGGTGACGATCGCCGCCACAGTTGAC GATGATGACTATTTTGTTCAGCCGCACTACGTACTGCTGTGGGTCAACTG TCAACGGCGCAGTTCTGGGCCGAAACGTGCGATGTACCAATTCATGTGGC CTTGGGCGGGCATCTGGGTAGAAATGTTTGGAAGCATTTGGTTCGCTGTT GGCTTGTGCGCGTTCAGCCGTGTAAATTGTTGTATCGGAAGTCGTCGAAC CTCTTCCCCTGTGAACTTAAGCGAGAATGCAGGCGAAGCTGGGGCGCATT GTGTGGGATCGTTTTCTGCGGGACCGCACAAAGCACCCATCACCACCACC AACAATATTCTGTCTCAGTTGTTGACGGTGAGACTAGTCTGTTGCTTACG TCACTCGCCGATCCCCGATCATGTGAGCAAGCGGATCACTGGCAATGCTG CTGCCCACGTTTGAACTCTACACGCATGTGTGCGCGTGATGCGGTCCTTC TTGGCGTCAGGTTTGCATTGCCCTGGCTGGCGTCAACCCTGAGCTGGGAC AGACGCTGGCCAGCACTGGGCTTACGGTGTGGAGGGCTGCCCAGGAGATG GCGCGCTTCATGTGGGAGCACAGGTATCTGACACCGATCCGTTTCTTGTG ACCAGCCCCTCAAATAGATGGGAATGCTCTTTACGCCGGAGGGTCGTGGG CGAGTATTTTGGGTTCGCCTATGATGTGTATCTGACACTTCATCACAAAC AAGGGGGGCAGGGGGGGCGATGGCTTGTGAGTAGGGAAAGAGGTGGGGGC ATCTTGATGCTTTCGGTTCGAAGGCGGGACGGCAGGGCCATCACCTGGCG AGCTGTTGTTGACAGGCGTGCGCAGCAACAACCCACAGCACGTGTAGGTA CTCGGGGTTGACCACAACACCGTGAACCCTTGGAACGCTTGACAAGCGTA CCAGCACCTATAGACATGGCCATCGCCGTAGCACCACTATTCGCCGATCA ACAGTGACTCAACCACAACCCCCCCTGATTTTGTTCCTTCATGTATCCCG CTGTTACGGCGGGTTGTCACCTCACCCTGCGCTTTGTGCAGACGGTGGTT TGCAGGCAAACGGGTGGTCGAGCTGGGTGCAGGATTGGGCCTGTGCGGCG TTCTTGCGTCCAAGCTTTGCACCGGCGGAGCGGTAAGCGTTGTCGTGCAA GTTTTGCCCAAGCTGTATTGTATGAGGTGCTTACTGCTTGGAGGCTGCAT GCCATTCGATCCCTCTCGGCGGCATCTGTCGGGTAGTAGCCTCGGCCGCG GGTAGTAACCTTCATACAGGGCAGTGTCGCTTGACTGCATTCGATCGGGG CGATGATTTATTCTGCTCTTGCCGTGAGGTGTTAATCGCCCGTTGTGCCG ATAAGGGTTAAGCTCTCCGATCTGCGTCGTGTCCTCTTTACCTCGCATCG TCCTCTGCTCTTGTAATTTTGTTGCTATTGTTGTTGTTGTTTACGATGAA GATGATGTTGGATGCCTCGATACACGTGGTCAGCGGGAGAGTCGTCAGCT AGCTCAAGGTTGCTCTTTGTCAACCTCGCGCCCCGGTAAACTCAGATGAA CCAATCGTTGCCCACGCCGTGACATAGGTGGTGATAACTGACGGTGGAGA CGAGTTCACAGACTCGGCCATGGATGCACTCAGAACAAACTTGGTAAGGA ACTCGTGTAACCTGCTGGCTCAGTCGCCGGCGAGAAACGGCAACAATGCT GCCGATGGTGGTGATGCTGCTTCTGCGGCGGCGGCCGGGAGTGGGGCGCA GGTGGCGTTGGAGAAGCTAACGTGGGGAGAACACGGGGCTTTCTTGGAGC GGAACGGGGGTGGATGCGACCGAACCGCCGCCGACGTCAATGATAGAGAT GACCAAGAAGGGCGGGGAGGGTTCGACTTCGTCGTAGCGGCCGATGTCAT ATGTGAGAAACCATGTACACCAACGGTAGGCGTTGTCCCGCACCATGGTT GGCATGACGACACACTTAACTGTGATGTTGCCGAGGCCGAGCTGATTCTG ACGGGGGTGGAGATGGTGGATTTGGTATACCGCCATGTAGGACAGGAATA AGCCCTCGTGGACAGCGCCGGTTGGGGGATTTGGAGATGCACACGGAGGG GATCTCTCCATTTTCTTTTTTTGCGACGGTCGATCACATGTCGTCATGGT TTTGCCCTCGTGCACACACTCTCGCGTGGTGTATGATTTGGGGAACTTGG TCGATGACTGTTACGCTTGATTTCGCAGCACAAACCTGAATATGATCGAA ACTTCAAACACTATGAAACAGAGATGTACGGTATACCCTCGTGTCCGCCC CCTTGTCATAGTTCTCGACAACGGGGAAGCGGTGGTGTCATACGATATGC TTTTTCAAATGTTTTCAGCAACTCGTCTTGTCGGCGCGCTCGTCTAGAGG CTGCGGCGCTTAACCGGGAAGTACCCTGCAGTGTACGTGGCTAGAAAGAC GCTCTTCTTGCGCGTGCACTCCGAAGACTCTCTCTTTCTTGTCTGTGTGT CCCGGGCTTCCGTTGTCGGCCCTGGATCCTGGTACTGAAACATGGACGGC GCGGCCGTGGACCCGGTACTTCTTGTGGAAGAATCATCCCTTTTTCTGTG ACCTCGAGTGATTGAACGATTTGTGATTTGTGGTTTTGCGTGCGAAGGAG GGCTGGATGAAGAACACTATTTGCCTGTACCACCTTTGACCCCCGCGCGC ATCGTCCTCTTTTCACTTTCTTACACGTTTTGCAAAACTTTCGTCACGAT GCAAATCCACCAGACGAGGAAGAAGGGGTCAGCCCGCTGCTGCACACCGT GGTCGACATCCTCCGGCTAAGAGCAGGAGAACGCAGCGACAATGAGCACC GCGACCACTGCCACAGCGCTTCTCCAGCGGCAGTGGGAGAGGAAGAGCAA CAGCCGCCGCAGCCCGAGTCACCGGAGCCTGGACCCTCATCTTCTCTCCG TTGCCAAGCCTCGTCGCCTTCGGCGCCGCCATCCCTGTCTCCGGCTCCGG TGGAGTCGACGTTTTTGCTGGCATTCGCCCGCCGCAACATTTCGATCGAG CGCGTCCTGGAGGAGGCAGAGAACCTCGGCCTCGCGTGGAGGGTCCCCGA CGACTTCGAACCCGCCAGCGCCTCCGAGAATATTTACCTCATGAGTCTTC GGTGACGGGGTCGGGGAGGCCGTTGGTTCGATGCTTGCGAGACAGCGGAA AGGGATTCTACTCTACAGTCGTTGTTGCGTGTGGTGTGAGTGGTTGGTTG AAAAAATTGTGTTGTTTTCCTCGTCTTGCCTCGATGACCTCTTGTTGCAG CAGTGTGCTAGTTCCGCGTACCGTTGGTTGGGCGACATGGGCTTCAAACT CGTAGTACTGTAGTTGTTGGGTCGTCAAGCGTACATGACGGGTGCTCACG AGAGAGCTCGTGGACGCAACTACTGAGGTACTGAACGGGGTCATTACTTG TAGTCACGACCCCCGAGGTAAATGGTGTCAGACGCTAGCGGAAGTTTTCT TTACTCTGCTCCGGTTGCCACCACGCAGTAACCACTATTCGTTTCGGTAG CTGTAATGGTGTTTATGGTGCCGGGATATGGTAAGGCGGTGTGCTGAACA CCATCTAGACTAAACCTTCAACGTATGGCTAGGTTGGGACCACGTCCGTG TAGACTCTTTTTTTCGGCCAAACACGCGTGCTACATTCTGAATCTGCCAA TACATTGATCAGCAGGTTTTTCAGGACCGGGAGGACGAGTATCCTCATAT TGTAGTTGAGTCTTGTGATTAGAGGAAACTTGCGTTAGCCTGGCAAGCTC TTGTACAAGCGGCGGCATTTTCGTCGTTTTGCGAAGTGACTTTTTTGCAC ATGGTCAAGTACCACTCATCGCGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8919:1330..5354+

>mRNA_E_fasciculatus_S2_contig8919.17019.1 ID=mRNA_E_fasciculatus_S2_contig8919.17019.1|Name=mRNA_E_fasciculatus_S2_contig8919.17019.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=987bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8919:1330..5354+ (Ectocarpus fasciculatus EfasUO2)
ATGGATGTCAAGGAGAGGACGCACGAGTTTTCCTTCACTTTTGGGGACGG
CGGTGACGACGAGCAGGTTTGCATTGCCCTGGCTGGCGTCAACCCTGAGC
TGGGACAGACGCTGGCCAGCACTGGGCTTACGGTGTGGAGGGCTGCCCAG
GAGATGGCGCGCTTCATGTGGGAGCACAGACGGTGGTTTGCAGGCAAACG
GGTGGTCGAGCTGGGTGCAGGATTGGGCCTGTGCGGCGTTCTTGCGTCCA
AGCTTTGCACCGGCGGAGCGGTGGTGATAACTGACGGTGGAGACGAGTTC
ACAGACTCGGCCATGGATGCACTCAGAACAAACTTGGTAAGGAACTCGTG
TAACCTGCTGGCTCAGTCGCCGGCGAGAAACGGCAACAATGCTGCCGATG
GTGGTGATGCTGCTTCTGCGGCGGCGGCCGGGAGTGGGGCGCAGGTGGCG
TTGGAGAAGCTAACGTGGGGAGAACACGGGGCTTTCTTGGAGCGGAACGG
GGGTGGATGCGACCGAACCGCCGCCGACGTCAATGATAGAGATGACCAAG
AAGGGCGGGGAGGGTTCGACTTCGTCGTAGCGGCCGATGTCATATACGAG
GAAGAAGGGGTCAGCCCGCTGCTGCACACCGTGGTCGACATCCTCCGGCT
AAGAGCAGGAGAACGCAGCGACAATGAGCACCGCGACCACTGCCACAGCG
CTTCTCCAGCGGCAGTGGGAGAGGAAGAGCAACAGCCGCCGCAGCCCGAG
TCACCGGAGCCTGGACCCTCATCTTCTCTCCGTTGCCAAGCCTCGTCGCC
TTCGGCGCCGCCATCCCTGTCTCCGGCTCCGGTGGAGTCGACGTTTTTGC
TGGCATTCGCCCGCCGCAACATTTCGATCGAGCGCGTCCTGGAGGAGGCA
GAGAACCTCGGCCTCGCGTGGAGGGTCCCCGACGACTTCGAACCCGCCAG
CGCCTCCGAGAATATTTACCTCATGAGTCTTCGGTGA
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