mRNA_E_fasciculatus_S2_contig8914.17017.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8914.17017.1
Unique NamemRNA_E_fasciculatus_S2_contig8914.17017.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8914.17017.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ1_9PHAE)

HSP 1 Score: 485 bits (1248), Expect = 9.250e-150
Identity = 452/566 (79.86%), Postives = 461/566 (81.45%), Query Frame = 1
Query:  901 MGGVGVSFDDPDTVEHQLRYESRP-SSSXXXXXXXXXXXXXXXXXXDGREDATAFPPVPREPVGGNTEAGPGVPRSPGRDMSETGGSXXXXXX-------------GP-TASGGRGLDHECRATHANVHVDADGXXXXXXXXXXXXXXXXXXXXXXXXXXXDVXXXXEGGDREMETAKPISPSGTGAAVPRAQTIESTLESIASGRNTGAALVAMGKWAAHRRLLLRPPGVGAAEPLSPLFDSAALPAVFEKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEGLLEEARAGLDDLLRWAMPNLNGGAPDGDNPGALAVGRHCWELVTSVRRLCSHGDGVPLAPDAARLLSQKLVDELRAHRKEALRVEQRAAAAXXXXXXXXXXXXXXXXXXXXXGVPGKRGLPMEELFRQSRELRLEATSALGQVCIVTSSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDPDLSRALLRAGHPFSLALAVAANEGGEGXXXXXXXXXXXXXXXDGDCSAVESKPSSDGV 2553
            MGGVGVSFDDPDTVEHQLRYESRP SS         XXXXXXXXXX  RED TA PPVP   VGG  EAG  VP SPGRDMS+TG  XXXXXX             GP TA GGRGLDHECRA HAN HVDAD  XXXXXXXXXXXXXXXXXXXXXXXXXX    XXEGGDREMET+KPIS SG  A VPRAQTIE TLESIASG+NTGAALVAMGKWAAHRRLL RPPGVGAAEPLSPLFDSAALPAVFEKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXX          +EEGLL EARAGLD+LLRWAMPNL+GG PDGDNPGA AV  HCWELVTSVRRLCSHGDGVPL PDAARLLSQKLVDELRAHRKEALRVEQRAAAA   XXXXXXXXXXXX   XXXGV GKRGLPMEELFRQ RELRLEA SALGQVCI+TSSM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     SEDPD SRALLRA HPFSLAL VAA+EGGE XXXXXXXXXXXXXXXDGDCSAVESKPSS+ V
Sbjct:    1 MGGVGVSFDDPDTVEHQLRYESRPYSSESPAHSGSGXXXXXXXXXXXXREDTTASPPVPCGDVGGRAEAGAAVPHSPGRDMSDTGSXXXXXXXXXXXXXXXXDGHLGPATAGGGRGLDHECRAAHANGHVDADNGXXXXXXXXXXXXXXXXXXXXXXXXXX----XXEGGDREMETSKPISASG--ATVPRAQTIEGTLESIASGKNTGAALVAMGKWAAHRRLLRRPPGVGAAEPLSPLFDSAALPAVFEKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQG-------NEEGLLGEARAGLDNLLRWAMPNLDGGTPDGDNPGAQAVVWHCWELVTSVRRLCSHGDGVPLTPDAARLLSQKLVDELRAHRKEALRVEQRAAAAAGMXXXXXXXXXXXXGIGXXXGVSGKRGLPMEELFRQ-RELRLEAASALGQVCIITSSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------SEDPDFSRALLRAAHPFSLAL-VAADEGGE-XXXXXXXXXXXXXXXDGDCSAVESKPSSERV 529          
BLAST of mRNA_E_fasciculatus_S2_contig8914.17017.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK5_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 7.310e-146
Identity = 380/582 (65.29%), Postives = 392/582 (67.35%), Query Frame = 1
Query:  739 MALLASVGLGSSGYSGEEAWDVRSRDAVARTLLTVCRRGYNAQDVKKVIEGMWEMGGVGVSFDDPDTVEHQLRYESRPSSSXXXXXXXXXXXXXXXXXXDGREDATAFPPVPREPVGGNTEAGPGVPRSPGRDMSE---------TGGSXXXXXXGP-TASGGRGLDHECRATHANVHVDADGXXXXXXXXXXXXXXXXXXXXXXXXXXXDVXXXXEGGDREMETAKPISPSGTGAAVPRAQTIESTLESIASGRNTGAALVAMGKWAAHRRLLLRPPGVGAAEPLSPLFDSAALPAVFEKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEGLLEEARAGLDDLLRWAMPNLNGGAPDGDNPGALAVGRHCWELVTSVRRLCSHGDGVPLAPDAARLLSQKLVDELRAHRKEALRVEQRAAAAXXXXXXXXXXXXXXXXXXXXXGVPGKRGLPMEELFRQSRELRLEATSALGQVCIVTSSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDPDLSRALLRAGHPFSLALAVAANEGG 2454
            MALL SVGLGSSGYSG+EAWDVRSRDAVARTLLTVCRRGYNAQDVKKVIEG+   GG                                          +GRED TA P VP   VGG  E+GP VP S GRDM++         +GG       GP TASGGRGLDHECRA HAN HVDAD  XXXXXXXXXXXXXXXXXXXXXXXXXX      EGGDREMETAKPIS SG  A VPRAQTIE TLESIASG+NTGAALVAMGKWAAHRRLLLRPPG                                                              DEEGLL EARAGLDDLLRWAMPNL+GGAPDGDNPGA AVG HCWELVTSVRRLCSHGDGVPL PDAARLLSQKLVDELRAHRKEALRVEQRAAAA      XXXXX          GVPGKRG+PM+ELFRQ RELRLEA SALGQVCIVTSSM   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           SEDPDLSRALLRA HP SLAL VAA+EGG
Sbjct:    1 MALLDSVGLGSSGYSGQEAWDVRSRDAVARTLLTVCRRGYNAQDVKKVIEGIGNNGG-----------------------------------------GEGREDTTASPLVPCGDVGGGAESGPAVPHSLGRDMNDNGSGGGSGVSGGRGGDGHAGPATASGGRGLDHECRAAHANGHVDADDGXXXXXXXXXXXXXXXXXXXXXXXXXX------EGGDREMETAKPISASG--ATVPRAQTIEGTLESIASGKNTGAALVAMGKWAAHRRLLLRPPG-------------------------------------------------------------GDEEGLLGEARAGLDDLLRWAMPNLDGGAPDGDNPGAQAVGWHCWELVTSVRRLCSHGDGVPLTPDAARLLSQKLVDELRAHRKEALRVEQRAAAAAGISAMXXXXXAKCNGIGGGGGVPGKRGIPMQELFRQ-RELRLEAASALGQVCIVTSSMATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------SEDPDLSRALLRAAHPLSLAL-VAADEGG 459          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8914.17017.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.250e-15079.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.310e-14665.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8914contigE_fasciculatus_S2_contig8914:236..6365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size2652
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_004360.1
Cds size2652
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8914.17017.1prot_E_fasciculatus_S2_contig8914.17017.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8914 236..6365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842545.894904-CDS-E_fasciculatus_S2_contig8914:235..10271696842545.894904-CDS-E_fasciculatus_S2_contig8914:235..1027Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8914 236..1027 +
1696842545.9097245-CDS-E_fasciculatus_S2_contig8914:1781..18821696842545.9097245-CDS-E_fasciculatus_S2_contig8914:1781..1882Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8914 1782..1882 +
1696842545.927046-CDS-E_fasciculatus_S2_contig8914:2425..29751696842545.927046-CDS-E_fasciculatus_S2_contig8914:2425..2975Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8914 2426..2975 +
1696842545.9361825-CDS-E_fasciculatus_S2_contig8914:3393..37531696842545.9361825-CDS-E_fasciculatus_S2_contig8914:3393..3753Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8914 3394..3753 +
1696842545.946208-CDS-E_fasciculatus_S2_contig8914:4661..48111696842545.946208-CDS-E_fasciculatus_S2_contig8914:4661..4811Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8914 4662..4811 +
1696842545.9565005-CDS-E_fasciculatus_S2_contig8914:5107..52831696842545.9565005-CDS-E_fasciculatus_S2_contig8914:5107..5283Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8914 5108..5283 +
1696842545.9664834-CDS-E_fasciculatus_S2_contig8914:5842..63651696842545.9664834-CDS-E_fasciculatus_S2_contig8914:5842..6365Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8914 5843..6365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8914.17017.1

>prot_E_fasciculatus_S2_contig8914.17017.1 ID=prot_E_fasciculatus_S2_contig8914.17017.1|Name=mRNA_E_fasciculatus_S2_contig8914.17017.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=884bp
VLDVDNGSEDEAEAGSVSPTGRPPSGSGGGGGSETTGAAVAAGKEMVEKK
NNTQQPNSPARLAAAPSFEQEQKQQQHGKEGARGVPGEEEGVAARGGAES
GGGGDSAASDSEETDSDDGDCRAGGAEAAGTANATTAAMPSATKTTTTTT
TPATTTDNAAGEEEMAPSTEVAARGQGLAAGEGGGGGGGRGGIGGATAGS
ESEVGEKVLKDSKAAASASNLVTGRLSSGGSSGQGGESLDPADLDDMALL
ASVGLGSSGYSGEEAWDVRSRDAVARTLLTVCRRGYNAQDVKKVIEGMWE
MGGVGVSFDDPDTVEHQLRYESRPSSSASSAQSGGGGGGDGGGGGDGRED
ATAFPPVPREPVGGNTEAGPGVPRSPGRDMSETGGSGGSGGDGPTASGGR
GLDHECRATHANVHVDADGGGGSGGCRASSSRQHSGGDGGGGGGGGDVGG
GGEGGDREMETAKPISPSGTGAAVPRAQTIESTLESIASGRNTGAALVAM
GKWAAHRRLLLRPPGVGAAEPLSPLFDSAALPAVFEKLLLLASATTRTMS
AGGGSGGDVGSGQQQQQQQQQQQQQQGDEEGLLEEARAGLDDLLRWAMPN
LNGGAPDGDNPGALAVGRHCWELVTSVRRLCSHGDGVPLAPDAARLLSQK
LVDELRAHRKEALRVEQRAAAAAGMSAMAAAASAKCKGIGGGGGVPGKRG
LPMEELFRQSRELRLEATSALGQVCIVTSSMAAPPPPSSSSRPQPPPAAD
NNNNDNNGNSSSMSHQQRQQPPPPPPPPPPPPPPPGPPPSEDPDLSRALL
RAGHPFSLALAVAANEGGEGGEEEGGGGGGEGGGGDGDCSAVESKPSSDG
VGVDGVDGGSSGSSGGVVSDVGVDVCGGVDVGGG
back to top

mRNA from alignment at E_fasciculatus_S2_contig8914:236..6365+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8914.17017.1 ID=mRNA_E_fasciculatus_S2_contig8914.17017.1|Name=mRNA_E_fasciculatus_S2_contig8914.17017.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6130bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8914:236..6365+ (Ectocarpus fasciculatus EfasUO2)
GTCCTCGACGTGGACAACGGCTCGGAAGATGAAGCGGAGGCTGGGTCCGT TTCGCCCACCGGTCGTCCACCCAGCGGTAGCGGCGGCGGCGGCGGCAGCG AGACGACGGGGGCGGCGGTGGCGGCAGGGAAGGAGATGGTCGAGAAGAAA AACAACACCCAGCAGCCCAACAGCCCAGCCAGGCTCGCCGCTGCTCCTTC TTTCGAGCAGGAACAGAAGCAGCAGCAGCACGGGAAGGAAGGGGCACGGG GCGTTCCTGGCGAGGAGGAAGGCGTGGCGGCGAGAGGCGGTGCTGAGAGC GGGGGGGGCGGGGATTCCGCTGCATCTGACTCCGAAGAGACCGATAGTGA TGATGGTGACTGCCGGGCAGGGGGTGCAGAGGCGGCCGGCACCGCCAACG CGACAACAGCAGCAATGCCGTCGGCAACAAAAACAACAACAACAACAACA ACGCCTGCTACTACCACCGACAATGCCGCAGGAGAAGAGGAAATGGCACC ATCAACTGAGGTTGCAGCAAGAGGCCAAGGCTTGGCGGCTGGAGAAGGAG GAGGAGGAGGAGGGGGGAGGGGGGGGATAGGAGGAGCCACAGCAGGATCA GAATCGGAAGTTGGTGAAAAGGTACTGAAGGATAGCAAGGCGGCTGCCTC CGCCTCTAATCTCGTCACGGGGCGCCTTTCTTCGGGCGGGAGTTCCGGTC AAGGGGGAGAGTCGCTTGACCCTGCCGACCTCGACGACATGGCGTTGCTG GCTTCGGTCGGACTGGGCTCGTCTGGGTACTCTGGAGAGGAGGTACGAAA GTAGTACTCTTACGCCGGAATCTGTTCTTAATATTTCGCTTGCCTGTGAG GCCTGTGACAACCCGTTGAATCTGCGTCCCGCTTATGACCGAGAGCTACT TTCGTGTTCAGAGACATACCTAACTCTAGTTGGGCCCCGTTCTTTATATC ATCAGCATTTAGGTTTTAACACGGGGGTATTCCCTGGCACCTTCGCTCCT TTCATATCATTTAATGTTCGCAACTCGTTCATGAGGCCTAAGCTGACGTA TTGGACTTTAAACGACGTGTGTGTGTCTGTAGAAATGTTGTCTTGGCCAC CTCGTGCGTTTGGGGGGGCATGTCAAGACAATTTTCGGGGGCAACCGTGT CCGATGTTGGGAGTCCGGATGAGAGGGTAGCTAAGCACTGAGCAATTGGA GTCACCATGGGGGCCAGCACTATTCTTGAGAAATGTCTCGGGTTTCTGGT TGTTTGGGGGGAGGCTTCGGCATGGTCACGCAGCGCCTGTACGTCCGTGC CACAACCATGCTTGACACTCGCTAGATTTGTGCCATCGCCTACTGCAATC ACTGCTACTCCTTTTACTGTTGCGGGAGCCTGTTGTGGCCGGTGCGTCTT TCGGTGTCAACGTCGTTGTGACATTGTGTTGCCTGTCCTCTTCTCGTCTT GCTGCAATTTCTAGCATCTCTCCCATACTGTCCGCACTCTCGTTTTCCCC TCTCCTTCGCATGTTCGATTCCTTTTTGTGTTTTTCAACGCTCTAGGCTT GGGACGTGCGCAGCAGGGACGCCGTTGCACGCACTCTGCTCACGGTTTGC AGGAGGGGCTACAACGCGCAGGATGTCAAGAAGGTTATCGAGGGAATGTG AGAGCATCTACTATTTGCCTGCAACCGTTTGTCTCGTCCCTCCTCCGTGC CTTTTCATCCCCCCTTCCTCTGTTTCATAATGTTTTGTGGTTTTCTCGAG GGCACGTCAAGATGGGCGAAATGGTATTGCTTGTGGAAACGGGCCGCAGT CTTTGGCTGGCTGTCTGACCATTTTTTACAGGTCCGTTTTTTCTACCTTC CTATCTTTCAGTTGTTCTGTTTCTGTTTTTCTCTTGTCTCTAAATTGCGG TGAAATATTCCCTGCCTTGCTCACCTCCCTTTCGCTCACCCCCCCCCCCC CTCCACATTCTACCCTGTCTCATTTTTCTTTTTTGCCCCCTCCNNNNNNN NNNTTCCTTTTTTTTATTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTAAA TTGGGGTAAAATTTTCCCTGCCTTGCTCCCCCCCCTTTCGCCCCCCCCCC CCCCCCCGGTACTTCTACCCTGTCTCGTTCTGTCATTCGGCCCCCTCCGG CGACGCCCCTCGTGCACTCTACTGCTGTTTCTCTCTGAAGGTGGGAGATG GGCGGTGTTGGCGTCTCCTTTGACGACCCTGACACCGTTGAACACCAGCT CCGATACGAGTCGCGTCCTTCTTCTTCCGCCTCTTCCGCTCAAAGCGGTG GCGGCGGCGGTGGCGACGGCGGCGGCGGCGGCGATGGTCGCGAAGACGCC ACAGCTTTTCCCCCTGTTCCTCGCGAACCCGTGGGTGGAAACACGGAGGC GGGGCCGGGTGTGCCCCGCTCCCCTGGCAGAGACATGAGTGAAACCGGCG GTAGCGGCGGCAGCGGCGGGGACGGACCCACGGCCAGCGGAGGGCGGGGT CTCGATCATGAGTGCCGCGCGACGCACGCCAACGTTCACGTCGACGCTGA TGGCGGCGGCGGCAGCGGCGGATGCCGTGCCTCGTCTTCGAGACAGCACA GCGGTGGTGACGGCGGCGGCGGTGGCGGTGGCGGTGATGTTGGCGGTGGC GGGGAGGGTGGTGACAGGGAGATGGAGACAGCGAAACCAATTTCGCCAAG CGGCACTGGGGCCGCGGTTCCTCGTGCGCAGACGATAGAGGTGAGAGACG GATTTTGGAGATCAGACTCCGCAGTCTTTTTAGGTGCAGGATGTTGTGCA TGCTTGGTTCGGGGGAGGAGACTGGCGGTTCGGTTATTTTCTTCGACTCT GCCAGCGGCTGGTTGTGGTTTGTTTGTCATGAAAGCAAGACGAAGGAGGA CAAGGGGGAGGAGGATGAAGAAAAGAGAGAGAGTGATCGGACGGAGAATA GGCAAGCTTGAGTACATCAATCCTTGCAATGCACCACCACACAGCACACG TTCACCATCAAGGAACGGCTCTACAAGCGGAAACGATCGGTTAGAAAAGA CAAAGCCTCAACCCGGTGGAACCGAGGTCCCATGACTGAGCACGCCGACC AATCGCGACAGACCGACGCCCCCCCCCCTCCACCAAACTCTTGATTCAAA CCGACCAGAGTACACTGGAATCGATCGCATCAGGAAGAAACACAGGGGCG GCCCTGGTCGCGATGGGAAAGTGGGCCGCCCACCGCCGCCTCCTCCTGCG GCCGCCGGGGGTAGGCGCCGCCGAGCCGCTGTCCCCCCTGTTTGACTCCG CCGCGCTGCCAGCCGTTTTCGAGAAGCTGCTTCTCCTCGCTTCGGCAACG ACAAGAACGATGTCCGCCGGTGGTGGTAGCGGTGGTGATGTTGGAAGTGG CCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGATG AGGAGGGTTTGTTGGAGGAGGCGAGGGCCGGGTTGGACGATCTGCTGCGC TGGGCGATGCCCAACCTGGTGAGCGAGGCGTGCTCTTGGGTCTCAGCAGT GTTTTTCTTGTCAAGTTGGTGCGGTGTATGTATGCATAGCGTTGATCTTG AGTCTTGAAAGGCTTTTCGTATGCAGGCGGGTCTTTTTATGCTTGTTGTG TTTGCTTTTAGCGGCGGGTAACGAAGGTTGGTTTTTTCGCTTTGGAGTTT TTTCGTCGTGGCTTGAGAGGGTAGCACGGCAGATGCACGGACTGCAAAGC ACAGCCGTGAGTTTCGAGTGCCGTTCTGCCGGCAAGACTCTCGTCTAGCT TTGGTGCGGGCGCGTGCTGAAAGCACTTTCCCACCACCGTCGAGTCGTGC TAGGCCGTAACCGGCATTTGCTAATTACAATTGGTTTGTGCCCTGTATAT AGCACCAAACGAGAGAAGTAGAGGCGGAGGGAAGGTCACCACGAATCGAG CGCTCACAGCAACACAAGAAGAGGGCAGCCTTGCATTGTCTCTTTTCTGT CTTGTACAACTGCATCCCAAAAATAAATTATAGCCTACCTCAACATCGTA CGGTCACGGGTGAGGCTCCGAGCAACCCGCAGTCATCAGCAGATACTGCC CCCATCGCCCCGTATCCTTTCCACCTACATGTCCCCCCTTGTGGAACGAT AGGATAGGCAGGATAAGGAAACTTGTTTGAGCCACCATTTGGCAAAGCAA GAAGGAACGATTGGTCAATGATGATCGGTTCTGTGGGGGAGAACAATGCT CTGTCCTCTCGAGGACACGTGGTCAGTGGTCTAACGACTAAGGCATGCAG TATTTTTGTACGCCCCCCCCCCCCAATACTCCGTCCTCTCGAGGAGGCGT TGCCAACGGTCTAACAACTACGACATGCAACAACATGAGTACCCCGCCCC CCCCCCCCCCCGTGTCATGAGAGCAGAATGGCGGTGCCCCCGACGGTGAT AACCCAGGCGCTCTAGCGGTGGGCCGTCACTGCTGGGAGTTGGTAACCTC TGTCCGGCGTTTGTGTTCGCACGGGGACGGGGTTCCCCTGGCCCCGGATG CCGCGCGCCTGCTGTCCCAGAAGCTGGTAAGTTTCTTTGGCGAGGGTTTA CTTTATTCTTACTGTACGTCGTGTGACCCACGAGGAATCCCTGTGAGCGA AATCTCACGGAAAGTTATTCTGCTGCTCGTGCTTTTTAGGGTGAGGCTGT GACAGTTTTTTCTCCATTTCCGATCGTCTGTTTTATTTCTCTTTCTCATT TTTTTTCCTGTTGTTCTTGTCGTCACACCACCACCACCACCATCATTTGC CTTCGGTTAATGAACCAAACACTTTCTTTCTATAATTTCTCCCTTATTTT GTTGTTGTTGGTGGTGGCGTAGGTGGACGAGCTGCGGGCTCACCGGAAGG AAGCCCTTCGGGTGGAGCAGAGAGCCGCCGCCGCCGCTGGGATGTCCGCG ATGGCAGCGGCGGCCTCGGCTAAATGCAAGGGCATCGGCGGTGGCGGTGG CGTACCAGGAAAACGGGGCCTTCCGATGGAGGAGCTCTTCCGGCAAAGGT ACACTTGATTGAGCTAAGACAATGGGGTATTCTTGACTGAGAAACAGTAG TCAGTACGGCCGCGCGTTGGAGAAAACTCTGTCCCCATCTGCTATTGACT GATTGATGCGACCCCCTCTAAGTACACTGGTACTATTTGTGCTCCCCATC CCGTCCTGTGTTTTGTAGCGGCATATTGCTACAAAAAAGGGGGGAGCTTT CGTGTAGTGATCATACGCTTACGCTTCGATGGCGAGATTTTGTTTCTATC CAACGGAAATCACCTTAGCGATTTGCAGGGCCTCTCAAGGTGTATCTGTT TTTCACATGCATCGTTTTTTTCATTCTTTCTTTCTCTGTCTCCGCCCCTC TCCCAATCTAAACGAGCATGCATACGTTTTCAAACTCCGTATACATCCGT GAAAGTTTAACTGAGTTTTTTGGGTTCGGGCTCCTACTGTCTCTCTCGCT CCCTCCCTCGCCCTCGTACTCACTCTCACATACATCCCTATCGATATCCC CCCCACCCATCTCTCCGTCACCCTCCTCTTCTTCTCCCTGTGCCAAATTT TCGAGAGCAGAGAGCTGAGACTCGAGGCGACCTCGGCGTTAGGCCAGGTC TGCATCGTCACTTCCTCGATGGCGGCGCCCCCTCCGCCTTCCTCTTCATC ACGCCCCCAACCGCCGCCCGCCGCGGACAACAACAACAACGACAACAACG GTAACTCTTCCTCGATGTCGCACCAACAGCGGCAGCAGCCCCCCCCGCCG CCACCGCCGCCGCCACCGCCACCGCCACCGCCTGGACCGCCGCCGTCGGA AGATCCGGATCTTTCTAGGGCCCTGCTGCGGGCGGGGCACCCCTTCTCCC TCGCTCTGGCTGTTGCTGCGAACGAAGGAGGGGAAGGTGGAGAGGAGGAG GGCGGTGGGGGGGGGGGGGAAGGAGGGGGAGGAGACGGTGACTGCTCTGC GGTTGAGTCGAAACCGTCGTCGGACGGTGTTGGTGTTGATGGTGTGGATG GTGGTAGTAGTGGTAGTAGTGGTGGTGTTGTTAGTGATGTTGGTGTTGAT GTTTGTGGTGGTGTTGATGTTGGTGGGGGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8914:236..6365+

>mRNA_E_fasciculatus_S2_contig8914.17017.1 ID=mRNA_E_fasciculatus_S2_contig8914.17017.1|Name=mRNA_E_fasciculatus_S2_contig8914.17017.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2652bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8914:236..6365+ (Ectocarpus fasciculatus EfasUO2)
GTCCTCGACGTGGACAACGGCTCGGAAGATGAAGCGGAGGCTGGGTCCGT
TTCGCCCACCGGTCGTCCACCCAGCGGTAGCGGCGGCGGCGGCGGCAGCG
AGACGACGGGGGCGGCGGTGGCGGCAGGGAAGGAGATGGTCGAGAAGAAA
AACAACACCCAGCAGCCCAACAGCCCAGCCAGGCTCGCCGCTGCTCCTTC
TTTCGAGCAGGAACAGAAGCAGCAGCAGCACGGGAAGGAAGGGGCACGGG
GCGTTCCTGGCGAGGAGGAAGGCGTGGCGGCGAGAGGCGGTGCTGAGAGC
GGGGGGGGCGGGGATTCCGCTGCATCTGACTCCGAAGAGACCGATAGTGA
TGATGGTGACTGCCGGGCAGGGGGTGCAGAGGCGGCCGGCACCGCCAACG
CGACAACAGCAGCAATGCCGTCGGCAACAAAAACAACAACAACAACAACA
ACGCCTGCTACTACCACCGACAATGCCGCAGGAGAAGAGGAAATGGCACC
ATCAACTGAGGTTGCAGCAAGAGGCCAAGGCTTGGCGGCTGGAGAAGGAG
GAGGAGGAGGAGGGGGGAGGGGGGGGATAGGAGGAGCCACAGCAGGATCA
GAATCGGAAGTTGGTGAAAAGGTACTGAAGGATAGCAAGGCGGCTGCCTC
CGCCTCTAATCTCGTCACGGGGCGCCTTTCTTCGGGCGGGAGTTCCGGTC
AAGGGGGAGAGTCGCTTGACCCTGCCGACCTCGACGACATGGCGTTGCTG
GCTTCGGTCGGACTGGGCTCGTCTGGGTACTCTGGAGAGGAGGCTTGGGA
CGTGCGCAGCAGGGACGCCGTTGCACGCACTCTGCTCACGGTTTGCAGGA
GGGGCTACAACGCGCAGGATGTCAAGAAGGTTATCGAGGGAATGTGGGAG
ATGGGCGGTGTTGGCGTCTCCTTTGACGACCCTGACACCGTTGAACACCA
GCTCCGATACGAGTCGCGTCCTTCTTCTTCCGCCTCTTCCGCTCAAAGCG
GTGGCGGCGGCGGTGGCGACGGCGGCGGCGGCGGCGATGGTCGCGAAGAC
GCCACAGCTTTTCCCCCTGTTCCTCGCGAACCCGTGGGTGGAAACACGGA
GGCGGGGCCGGGTGTGCCCCGCTCCCCTGGCAGAGACATGAGTGAAACCG
GCGGTAGCGGCGGCAGCGGCGGGGACGGACCCACGGCCAGCGGAGGGCGG
GGTCTCGATCATGAGTGCCGCGCGACGCACGCCAACGTTCACGTCGACGC
TGATGGCGGCGGCGGCAGCGGCGGATGCCGTGCCTCGTCTTCGAGACAGC
ACAGCGGTGGTGACGGCGGCGGCGGTGGCGGTGGCGGTGATGTTGGCGGT
GGCGGGGAGGGTGGTGACAGGGAGATGGAGACAGCGAAACCAATTTCGCC
AAGCGGCACTGGGGCCGCGGTTCCTCGTGCGCAGACGATAGAGAGTACAC
TGGAATCGATCGCATCAGGAAGAAACACAGGGGCGGCCCTGGTCGCGATG
GGAAAGTGGGCCGCCCACCGCCGCCTCCTCCTGCGGCCGCCGGGGGTAGG
CGCCGCCGAGCCGCTGTCCCCCCTGTTTGACTCCGCCGCGCTGCCAGCCG
TTTTCGAGAAGCTGCTTCTCCTCGCTTCGGCAACGACAAGAACGATGTCC
GCCGGTGGTGGTAGCGGTGGTGATGTTGGAAGTGGCCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGATGAGGAGGGTTTGTTGG
AGGAGGCGAGGGCCGGGTTGGACGATCTGCTGCGCTGGGCGATGCCCAAC
CTGAATGGCGGTGCCCCCGACGGTGATAACCCAGGCGCTCTAGCGGTGGG
CCGTCACTGCTGGGAGTTGGTAACCTCTGTCCGGCGTTTGTGTTCGCACG
GGGACGGGGTTCCCCTGGCCCCGGATGCCGCGCGCCTGCTGTCCCAGAAG
CTGGTGGACGAGCTGCGGGCTCACCGGAAGGAAGCCCTTCGGGTGGAGCA
GAGAGCCGCCGCCGCCGCTGGGATGTCCGCGATGGCAGCGGCGGCCTCGG
CTAAATGCAAGGGCATCGGCGGTGGCGGTGGCGTACCAGGAAAACGGGGC
CTTCCGATGGAGGAGCTCTTCCGGCAAAGCAGAGAGCTGAGACTCGAGGC
GACCTCGGCGTTAGGCCAGGTCTGCATCGTCACTTCCTCGATGGCGGCGC
CCCCTCCGCCTTCCTCTTCATCACGCCCCCAACCGCCGCCCGCCGCGGAC
AACAACAACAACGACAACAACGGTAACTCTTCCTCGATGTCGCACCAACA
GCGGCAGCAGCCCCCCCCGCCGCCACCGCCGCCGCCACCGCCACCGCCAC
CGCCTGGACCGCCGCCGTCGGAAGATCCGGATCTTTCTAGGGCCCTGCTG
CGGGCGGGGCACCCCTTCTCCCTCGCTCTGGCTGTTGCTGCGAACGAAGG
AGGGGAAGGTGGAGAGGAGGAGGGCGGTGGGGGGGGGGGGGAAGGAGGGG
GAGGAGACGGTGACTGCTCTGCGGTTGAGTCGAAACCGTCGTCGGACGGT
GTTGGTGTTGATGGTGTGGATGGTGGTAGTAGTGGTAGTAGTGGTGGTGT
TGTTAGTGATGTTGGTGTTGATGTTTGTGGTGGTGTTGATGTTGGTGGGG
GT
back to top