mRNA_E_fasciculatus_S2_contig890.17004.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig890.17004.1
Unique NamemRNA_E_fasciculatus_S2_contig890.17004.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G036_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 9.790e-57
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1
Query:    1 MQDKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPS 276
            MQDKL APPEFDGPVRDRKCTD+IFTLAIIIMWITMT VGISSVQQGDVRELLAPTDYEGNLCGFDDGY++  KLYYANNVGSGVC  +CPS
Sbjct:    1 MQDKLTAPPEFDGPVRDRKCTDIIFTLAIIIMWITMTVVGISSVQQGDVRELLAPTDYEGNLCGFDDGYEDRGKLYYANNVGSGVCEKSCPS 92          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.530e-52
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 1
Query:    1 MQDKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETDL 288
            MQDKL A PEFDGPVR+RKCTD+IF LAIIIMWITMTAVGISS+QQGDVRELLAPTDYEGNLCGFDDGY++  KLYYANNVGSGVCV TCPS TDL
Sbjct:    4 MQDKLTASPEFDGPVRERKCTDIIFMLAIIIMWITMTAVGISSIQQGDVRELLAPTDYEGNLCGFDDGYEDLGKLYYANNVGSGVCVGTCPSTTDL 99          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAM1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.030e-27
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    7 DKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSS---KLYYANNVGSGVCVSTCP 273
            DKL AP ++DGPV DR CTD++  L +  MWI MT VGI +V +GD R+++ P DY+GN+CG D G  + S   KLYY NN G+GVCV  CP
Sbjct:   10 DKLEAPADWDGPVEDRHCTDILLLLLLWGMWIAMTGVGIYAVTEGDYRKVVYPLDYDGNICGTDFGSIDMSDHEKLYYVNNYGAGVCVKECP 101          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK)

HSP 1 Score: 103 bits (258), Expect = 7.600e-24
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 MQDKLHAPP---EFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETD 285
            + ++L AP    E++GP  +RKCTDV+F +AI+  W+ MT VG+ S+Q GD   L    DY GN+CG  + Y + SK+YY    GSGVCVS CPS TD
Sbjct:   18 LGERLKAPAGRDEYEGPTANRKCTDVLFFIAIVATWVCMTIVGVDSIQNGDYAVLTNGIDYNGNICGTGN-YSDYSKMYYVGYSGSGVCVSACPSTTD 114          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN0_PHATC)

HSP 1 Score: 103 bits (256), Expect = 1.460e-23
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    7 DKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLY--YANNVGSGVCVSTCPSET 282
            DKL AP +FDGP +DR CTD++  LA+I MW+ MT VGI +V  GD R +L P DY+GN+CG D G   +   Y  Y N+   GVCV  CP  T
Sbjct:    8 DKLVAPADFDGPTKDRHCTDILMLLALIAMWVAMTGVGIYAVTNGDYRLVLYPLDYDGNVCGTDFGLDMTEFPYLLYVNSYTGGVCVKECPDLT 101          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5U8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.760e-23
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    7 DKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDG---YKNSSKLYYANNVGSGVCVSTCPSETDL 288
            +KL APP+F GPV++R+CTDV+ +L +++ W  MT +G  +V  GD R ++ P DY+GN+CG + G    ++   LYY N+  +GVCV  CPS  DL
Sbjct:    9 EKLQAPPDFSGPVQNRRCTDVLCSLLLVLTWAAMTGLGFYAVSNGDYRVIVYPMDYDGNICGTNYGNIDMEDYPFLYYVNSYSAGVCVKECPSIEDL 105          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 6.140e-22
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   10 KLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETDLE 291
            KL AP + +G   DR+CTDV+F L +I+ W+ MT +G+  +  G+   LL   DY+G +CG DDG K+ SKLYY    G+GVCV  CP+ T+ +
Sbjct:   17 KLAAPDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTNFD 109          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 7.490e-21
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   19 APPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETDLE 291
            AP + +G   DR+CTDV+F L +I+ W+ MT +G+  +  G+   LL   DY+G +CG DDG K+ SKLYY    G+GVCV  CP+ T+ +
Sbjct:    4 APDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTNFD 93          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2F1_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 1.880e-20
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   13 LHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETD 285
            + A  +FDGPV++R+CTD+++   ++++WI MT +G  +V  GD+  +L P DY+G  CG  D Y++   LYY    G+GVCV +CP  TD
Sbjct:   12 IQAGHDFDGPVKNRRCTDLLWLGLLLVVWICMTVIGKQAVDNGDIDLILHPVDYQGRSCGVGD-YEDKPDLYYVRFDGTGVCVESCPQTTD 101          
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R109_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.890e-20
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   10 KLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKL---YYANNVGSGVCVSTCPS 276
            KL AP +FDGP ++R+CTDV  +L ++I WI MT +G  +V  GD R +L P DY+GN+CG D G  + +     Y+ N    GVCV  CPS
Sbjct:   13 KLIAPADFDGPTKNRRCTDVFCSLLLVIAWIAMTGIGAYAVTNGDYRFVLFPIDYDGNICGTDFGDVDMTDFEYFYFINIFTGGVCVKECPS 104          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.790e-5789.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Choline1.530e-5287.50transporter-like protein n=1 Tax=Ectocarpus sp. CC... [more]
Choline9.030e-2754.35transporter-like protein (Fragment) n=1 Tax=Amphip... [more]
Choline7.600e-2448.98transporter-like protein n=1 Tax=Heterosigma akash... [more]
Choline1.460e-2351.06transporter-like protein n=2 Tax=Phaeodactylum tri... [more]
Choline2.760e-2345.36transporter-like protein n=1 Tax=Odontella aurita ... [more]
Choline6.140e-2245.74transporter-like protein n=1 Tax=Ectocarpus silicu... [more]
Choline7.490e-2145.05transporter-like protein n=1 Tax=Ectocarpus sp. CC... [more]
Choline1.880e-2042.86transporter-like protein n=1 Tax=Heterosigma akash... [more]
Choline1.890e-2046.74transporter-like protein n=2 Tax=Ditylum brightwel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig890contigE_fasciculatus_S2_contig890:1462..3153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score178.3
Seed ortholog evalue1.7e-42
Seed eggNOG ortholog2880.D7G036
Model size294
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG OGs2D6PU@1,2T2K5@2759
Ec32 ortholog descriptionCholine transporter-like
Ec32 orthologEc-12_007070.1
Cds size294
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842544.6995015-CDS-E_fasciculatus_S2_contig890:1461..15771696842544.6995015-CDS-E_fasciculatus_S2_contig890:1461..1577Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig890 1462..1577 -
1696842544.7112522-CDS-E_fasciculatus_S2_contig890:2740..27801696842544.7112522-CDS-E_fasciculatus_S2_contig890:2740..2780Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig890 2741..2780 -
1696842544.7215216-CDS-E_fasciculatus_S2_contig890:3015..31531696842544.7215216-CDS-E_fasciculatus_S2_contig890:3015..3153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig890 3016..3153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig890.17004.1prot_E_fasciculatus_S2_contig890.17004.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig890 1462..3153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig890.17004.1

>prot_E_fasciculatus_S2_contig890.17004.1 ID=prot_E_fasciculatus_S2_contig890.17004.1|Name=mRNA_E_fasciculatus_S2_contig890.17004.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
MQDKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVR
ELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETDLE*
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mRNA from alignment at E_fasciculatus_S2_contig890:1462..3153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig890.17004.1 ID=mRNA_E_fasciculatus_S2_contig890.17004.1|Name=mRNA_E_fasciculatus_S2_contig890.17004.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1692bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig890:1462..3153- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGATAAGCTCCATGCGCCGCCAGAGTTCGACGGCCCGGTGAGGGA TCGAAAGTGCACCGATGTCATCTTCACGCTGGCCATCATCATCATGTGGA TTACGATGACCGCGGTGGGCATCTCCAGCGTCCAACAGGTACGGAGTGAT AACAGTCAGTCAACGTGACGCTAGTTGTCAACATCACTGCGGTCGTGGAC AGACAAGAGAGCGGTCATTTACAGCGGTAGTGCTATCTCGGAAGGCATTC GAGTCAAGCCACCAAAATTATTACGCGTTTTCTCGTGTTCGTTCCCGAAC TGAACGCTCCGTCCGGCTTGCGCGTCGTTTTGCGCCCGCCTCCTCTTTCC TCCCTGCTCTCTCTCTCTCTCAGGGCGATGTGAGAGAGCTCTTGGCACCC ACCGACTACGAAGGTATGGGCATCGGCGGGTTTTTGAACAGCAGCAGGTG GTGTTTTACCCGGCAAAGGCCGCTGTTAATGATATTGCTGTTCCCTCCAG GGGCAAAAACACGAAACAGCAGAGCGCTACCTACGAGCTCACGCTGGACG AAGGCCACATTTTTTTGTTAGCCTGGCTGCAGGTCAAAAGCTGAAACTCG TTTACATTCCAAGAACAGGTGTGCACAGGCAGCAGCAGTGCAGGTTGCCC GTCGAGACACGCATGCACCCAGTGCGGTCGAAAGTGTTCATTTGTTGGTT GCCATGGTCTCGTACGCAAGCGCTCCCTCTACAAGTCATTTTGAAACTTT TGGACCTTTTGACTTTCTCGTTGTCTTTATATTCTTTCCCAAATTCCTTG CGTTACGTGTAATTGTTCCATTTCACAACGGCACATCCGCGTGCACGCGT GCCCGCTGTACATGCACTCTACTATGACGCGTATTTTTGTCATCAGCAGC CGCATTAATCATATGTGCCTCGCCCGTTCAAAATGCATTGTCTCGTCGCC TCGCAACCATCCTTGTGTTTCCCTGCGTAGTCCCGTTATGCATTTTGCGG GCCACATTTTCCAACGTACATGATGAGCGTGCCTGTACGTTGGGCGATGC GGTTTGTCGTTCACAGCTAAACATGTGTCTTTGTAGCTGGTCTCTTTTAC ACCTTCACTACCGATGTAGACGACACCCCAGAGATGCTGCGGTAAGCAAC CGAGGGTACATACACGTATGCATGCCGTCACTGAAAGACTACCACGGTAC TCGTTCGAGACAGTACCGAAGCCGAAGCGATATGTACGTTGAAGCAGCGA ATGGGGGAGTAACATGCTCGACATTACTACTGGCTTATTTCAATTCTAAA CCTACATGTACACACGAAGGGTCGGTGATGCCAGCTAGCACTACTGCTGT AGTCACAAAACCACCACCTCCTTCCAGAGTAATACTTGAGATCCTTCCGG AGTAATACTCGAGGAACGCATACCTGCAAAATTCCTCCCTCTCACACACC AGGTTGTTCCTCTTTTCTATGTATGATAGACCAGCAACGAACGGACGGTC TCAGGCTAGGCGGGCTAACGCCTGAACAACAACACACGGTTTCGTTTGGT GCTGCTTGCTCTCCTTTCCGTTTCAGGCAACCTTTGTGGTTTTGATGACG GCTACAAGAACTCCAGCAAGCTCTACTACGCCAACAACGTGGGCTCCGGG GTTTGCGTGTCTACATGCCCGTCAGAGACTGACTTGGAGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig890:1462..3153-

>mRNA_E_fasciculatus_S2_contig890.17004.1 ID=mRNA_E_fasciculatus_S2_contig890.17004.1|Name=mRNA_E_fasciculatus_S2_contig890.17004.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig890:1462..3153- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGATAAGCTCCATGCGCCGCCAGAGTTCGACGGCCCGGTGAGGGA
TCGAAAGTGCACCGATGTCATCTTCACGCTGGCCATCATCATCATGTGGA
TTACGATGACCGCGGTGGGCATCTCCAGCGTCCAACAGGGCGATGTGAGA
GAGCTCTTGGCACCCACCGACTACGAAGGCAACCTTTGTGGTTTTGATGA
CGGCTACAAGAACTCCAGCAAGCTCTACTACGCCAACAACGTGGGCTCCG
GGGTTTGCGTGTCTACATGCCCGTCAGAGACTGACTTGGAGTAA
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