mRNA_E_fasciculatus_S2_contig890.17004.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G036_ECTSI) HSP 1 Score: 179 bits (453), Expect = 9.790e-57 Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1
Query: 1 MQDKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPS 276
MQDKL APPEFDGPVRDRKCTD+IFTLAIIIMWITMT VGISSVQQGDVRELLAPTDYEGNLCGFDDGY++ KLYYANNVGSGVC +CPS
Sbjct: 1 MQDKLTAPPEFDGPVRDRKCTDIIFTLAIIIMWITMTVVGISSVQQGDVRELLAPTDYEGNLCGFDDGYEDRGKLYYANNVGSGVCEKSCPS 92
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.530e-52 Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 1
Query: 1 MQDKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETDL 288
MQDKL A PEFDGPVR+RKCTD+IF LAIIIMWITMTAVGISS+QQGDVRELLAPTDYEGNLCGFDDGY++ KLYYANNVGSGVCV TCPS TDL
Sbjct: 4 MQDKLTASPEFDGPVRERKCTDIIFMLAIIIMWITMTAVGISSIQQGDVRELLAPTDYEGNLCGFDDGYEDLGKLYYANNVGSGVCVGTCPSTTDL 99
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAM1_9STRA) HSP 1 Score: 110 bits (274), Expect = 9.030e-27 Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1
Query: 7 DKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSS---KLYYANNVGSGVCVSTCP 273
DKL AP ++DGPV DR CTD++ L + MWI MT VGI +V +GD R+++ P DY+GN+CG D G + S KLYY NN G+GVCV CP
Sbjct: 10 DKLEAPADWDGPVEDRHCTDILLLLLLWGMWIAMTGVGIYAVTEGDYRKVVYPLDYDGNICGTDFGSIDMSDHEKLYYVNNYGAGVCVKECP 101
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK) HSP 1 Score: 103 bits (258), Expect = 7.600e-24 Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 1 MQDKLHAPP---EFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETD 285
+ ++L AP E++GP +RKCTDV+F +AI+ W+ MT VG+ S+Q GD L DY GN+CG + Y + SK+YY GSGVCVS CPS TD
Sbjct: 18 LGERLKAPAGRDEYEGPTANRKCTDVLFFIAIVATWVCMTIVGVDSIQNGDYAVLTNGIDYNGNICGTGN-YSDYSKMYYVGYSGSGVCVSACPSTTD 114
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN0_PHATC) HSP 1 Score: 103 bits (256), Expect = 1.460e-23 Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 7 DKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLY--YANNVGSGVCVSTCPSET 282
DKL AP +FDGP +DR CTD++ LA+I MW+ MT VGI +V GD R +L P DY+GN+CG D G + Y Y N+ GVCV CP T
Sbjct: 8 DKLVAPADFDGPTKDRHCTDILMLLALIAMWVAMTGVGIYAVTNGDYRLVLYPLDYDGNVCGTDFGLDMTEFPYLLYVNSYTGGVCVKECPDLT 101
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5U8_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.760e-23 Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 7 DKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDG---YKNSSKLYYANNVGSGVCVSTCPSETDL 288
+KL APP+F GPV++R+CTDV+ +L +++ W MT +G +V GD R ++ P DY+GN+CG + G ++ LYY N+ +GVCV CPS DL
Sbjct: 9 EKLQAPPDFSGPVQNRRCTDVLCSLLLVLTWAAMTGLGFYAVSNGDYRVIVYPMDYDGNICGTNYGNIDMEDYPFLYYVNSYSAGVCVKECPSIEDL 105
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 6.140e-22 Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 10 KLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETDLE 291
KL AP + +G DR+CTDV+F L +I+ W+ MT +G+ + G+ LL DY+G +CG DDG K+ SKLYY G+GVCV CP+ T+ +
Sbjct: 17 KLAAPDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTNFD 109
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 7.490e-21 Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 1
Query: 19 APPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETDLE 291
AP + +G DR+CTDV+F L +I+ W+ MT +G+ + G+ LL DY+G +CG DDG K+ SKLYY G+GVCV CP+ T+ +
Sbjct: 4 APDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTNFD 93
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2F1_HETAK) HSP 1 Score: 94.4 bits (233), Expect = 1.880e-20 Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 13 LHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKLYYANNVGSGVCVSTCPSETD 285
+ A +FDGPV++R+CTD+++ ++++WI MT +G +V GD+ +L P DY+G CG D Y++ LYY G+GVCV +CP TD
Sbjct: 12 IQAGHDFDGPVKNRRCTDLLWLGLLLVVWICMTVIGKQAVDNGDIDLILHPVDYQGRSCGVGD-YEDKPDLYYVRFDGTGVCVESCPQTTD 101
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Match: Choline (transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R109_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.890e-20 Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 10 KLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRELLAPTDYEGNLCGFDDGYKNSSKL---YYANNVGSGVCVSTCPS 276
KL AP +FDGP ++R+CTDV +L ++I WI MT +G +V GD R +L P DY+GN+CG D G + + Y+ N GVCV CPS
Sbjct: 13 KLIAPADFDGPTKNRRCTDVFCSLLLVIAWIAMTGIGAYAVTNGDYRFVLFPIDYDGNICGTDFGDVDMTDFEYFYFINIFTGGVCVKECPS 104 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig890.17004.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig890.17004.1 >prot_E_fasciculatus_S2_contig890.17004.1 ID=prot_E_fasciculatus_S2_contig890.17004.1|Name=mRNA_E_fasciculatus_S2_contig890.17004.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp MQDKLHAPPEFDGPVRDRKCTDVIFTLAIIIMWITMTAVGISSVQQGDVRback to top mRNA from alignment at E_fasciculatus_S2_contig890:1462..3153- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig890.17004.1 ID=mRNA_E_fasciculatus_S2_contig890.17004.1|Name=mRNA_E_fasciculatus_S2_contig890.17004.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1692bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig890:1462..3153- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig890:1462..3153- >mRNA_E_fasciculatus_S2_contig890.17004.1 ID=mRNA_E_fasciculatus_S2_contig890.17004.1|Name=mRNA_E_fasciculatus_S2_contig890.17004.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig890:1462..3153- (Ectocarpus fasciculatus EfasUO2)back to top |