mRNA_E_fasciculatus_S2_contig89.17003.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig89.17003.1
Unique NamemRNA_E_fasciculatus_S2_contig89.17003.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig89.17003.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig89contigE_fasciculatus_S2_contig89:47136..51013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size672
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_000820.1
Cds size672
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig89.17003.1prot_E_fasciculatus_S2_contig89.17003.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig89 47136..51013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842544.5955825-CDS-E_fasciculatus_S2_contig89:47135..473281696842544.5955825-CDS-E_fasciculatus_S2_contig89:47135..47328Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig89 47136..47328 +
1696842544.6077738-CDS-E_fasciculatus_S2_contig89:48290..483881696842544.6077738-CDS-E_fasciculatus_S2_contig89:48290..48388Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig89 48291..48388 +
1696842544.6200492-CDS-E_fasciculatus_S2_contig89:48803..488651696842544.6200492-CDS-E_fasciculatus_S2_contig89:48803..48865Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig89 48804..48865 +
1696842544.6317644-CDS-E_fasciculatus_S2_contig89:49450..495311696842544.6317644-CDS-E_fasciculatus_S2_contig89:49450..49531Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig89 49451..49531 +
1696842544.6494596-CDS-E_fasciculatus_S2_contig89:50254..503821696842544.6494596-CDS-E_fasciculatus_S2_contig89:50254..50382Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig89 50255..50382 +
1696842544.66236-CDS-E_fasciculatus_S2_contig89:50903..510131696842544.66236-CDS-E_fasciculatus_S2_contig89:50903..51013Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig89 50904..51013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig89.17003.1

>prot_E_fasciculatus_S2_contig89.17003.1 ID=prot_E_fasciculatus_S2_contig89.17003.1|Name=mRNA_E_fasciculatus_S2_contig89.17003.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=224bp
MPTSMHKRRPFESSPEGALMSCARGTRRRCRHRSARTTWRQTMAPVSSRA
LLCYVAAIFCRSVRGTIGTYYASNCYEVGGGNMGPLYLECTGCQYTEAFE
CLQTLRGNTSHNVPSGCGMNILTVQPDPTCCPVFEDPDNQRSLDSSTSAY
PDALLCLENAGCEGDNLHTNLKEECVFNLCNEEFACVAAYSGSWRLSPAV
GTAVVLALAVARIPTSLGFGPGG*
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mRNA from alignment at E_fasciculatus_S2_contig89:47136..51013+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig89.17003.1 ID=mRNA_E_fasciculatus_S2_contig89.17003.1|Name=mRNA_E_fasciculatus_S2_contig89.17003.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3878bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig89:47136..51013+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGACGAGTATGCACAAACGCCGGCCGTTTGAAAGCTCTCCAGAGGG
AGCATTGATGTCGTGTGCCCGTGGAACAAGGCGGCGATGTCGTCACCGCT
CGGCGAGGACCACTTGGAGGCAAACCATGGCCCCTGTTTCTTCACGGGCT
TTATTGTGTTACGTTGCAGCAATATTCTGCCGATCTGTACGAGGTGAGCG
ACAGCATGTATTGGTGTTGATGTGTTTAAATCCTAGGTATGTACGTAGTC
TCGGCACAAACTCTCCGCACGTCCCACCTGTAGACGGTGGACTATTGCAG
TGTAGATGGGAGACACGGGCGCCCATACCAGAGAATACCTGTACACAGAC
TGCAGCCTACAATCTTCATCGGGATCCGGCACATCCTCCACCTCTTGGAT
CCAAACAGCATGGTAGTCAACATGGCCAAATGAATGTGTAATTTACTACA
GAACTGTATTGTCGTATAGATTCGTAGACTACAGTTACTGTAGTTCTGTA
CACCTACAATCACCGGCATCCGGCACATCCTCCACCTCTTGGATCCAAAA
AGCTGCCATACGGTAGTCAACATGGGCAAATGAATATGTAAATACGACCT
GTAGACTACATGTCGTGTAGATTCGTAGACTACAAGTTCTTCTGTGTACT
GCTGTCGTACGGCTCCGTAGACTGCGTATTGTAGTACGAACCTACGGCAG
CACATGCATATGCATGCGGCATGTTGTAGCATCCGCGAAAATACTCGACG
GCTATGCCGTGCACGAAGTCTACGACAGATCGGGCGTAGACCCTGTACTA
AACCGAGGGGGTTGCTTGGCTGTGTTCGGAGGTGCGGTTGGTATGCGTCC
ACATGTGTAATAGCTCGAACGGGTATGTATGTACAATACTCTTTCTGTGT
TTGTATTTGTTTTCCCTAACGAAAATGTGTAGACAAGCAGCGTTTTCTGT
GTGCGTCGGCCCATCAACCGACCATAGCGTGATTCTAGTATCCTCGTTGC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTTCAACTCTTTCTCCAGTATCCGTGAGCTTCTTGTTCTTTCTTG
CACCCCGTCCGAATAACGACTAGATAACCCGCTGCCTTTTACACCGTTCT
CCCAGGCACCATCGGCACGTACTATGCGTCCAACTGCTACGAGGTGGGCG
GCGGGAATATGGGCCCTTTGTATCTCGAATGCACCGGCTGCCAGTACACT
GAGGTAAGCGTGTATTACGGGGCTGAGTGTTTCATCTAAAGGGTTACCGA
CTCAAGTACACGGTAAGTTCGTGGGGTCAAGATTACGTTTGGTCGCTCAG
ATGGCATACCGGAGATCGTTACGTGGGCAGCCAACAACAACAACGACGAT
GACAACGAAGGGTATGACACGACGACGACGACAACAACAACGACGACGAC
AGCAGTAACAGCAGAAACAACCAACAACTCCAACAGCAACAACATCAACA
ACATTATCAGCACAGCTGCAGTCATTTTTCCAGGTGTGCTTGTGGAGTAG
TAGACACTCGTCTGGGCAGAACGGTTGTTGGGTACCTGTGGCCAACCAGC
CTCGTACATGTTCTGCATTTGGCCACAAGTAATTTCAACGTCCCCGATTT
GACCGCTGTCTTGCTCAGGCGTTCGAGTGTCTGCAAACGCTGAGGGGAAA
CACATCCCATAACGTGCCAAGCGGCTGCGGGTGAGAGGGTCACTACGAGT
GAAGCAAAACCTTACTCGTAGTTCTCAGGCTACTCGCCGAAAAGAGTGTG
GTTTGTGGGTTGTTTGCTCGTTTTGCAACCAGCCCCTTTGACAAGAACCG
CGATGTTCGCGATCGGTTTCGTTCCTTGGGTGCAGACTTGCAAGCAAGCG
TAGAATAAAACACACAGCTGTCTATATATTGAAGACCGTCGTGACAACGA
ACACCTTTACTCGTTGATCGGGTTTCCCTCCGTCTCTGCGCGGACGTCTC
GAAAGGGAACACATCCACCTCGTGTATAAAGCTACCGCATTGATTTGAGT
CTGGGCAATGATGACTCCTTCTACATAACCTCCTACGAGGTTATTTAGGC
AACATCCAGCATCAATTTGCAAATCTTTCATCGCAGGTAACATGTCGTGC
TACGGAAGGCTTCACGTATGGATCACCTTACGTAGCCTACTCTTATCACC
GAATCCCTACAAGGCGCTTCTTTGGGACAAATACATTGCAACAGGCCAGC
CCCACCCCGAACGTCTTGCATAGTTTCACACAACAATTCCTCATGCCTCA
AACACAATTGGACAGGATGAACATTTTGACGGTGCAGCCAGACCCGACCT
GCTGCCCAGTTTTCGAGGACCCAGACAACCAGAGATCACTCGACAGGTAA
CCCTGCGACTTGGAAAGTTGCTAGGAAAGAGAGACAGATGGCTTGTTTCC
AAACAGAATGACGACGTCAATGAAATGGTAACGTTTCGATGTTGGTTCTC
CGTACCATCAAATGGGCGCAAACTCAGCCCAGTCACTGATGATCAAAATA
TCACGGTGGCCAGAGGGGAAGGTTGGGGCACCGGTGGCGATCTGCAAAGG
GTGGGGTGGGGAGGTTGGAGGGGCGGTTTTTTCCTTAAACACGTTGTTTG
TCTGTGGTGCCAGCCCGCCATGCTAGTTGGATTAGCACCACTATCCGAGA
TTGCGTGATTAGCTGCGCGCTGGGCGCGCACCCTCCCCACCCCAGGTTGT
AATCGGTGCCTAGCCTATCCATAACCTGGCCTCTGGCCCCCCGTGCATGC
CTCGGGTGGTGTATCACCAAATTCTGTATTGGGTGCATCCGGAGAACCGG
TTCATGCTGGCATATCCCATCGTGTAACGCGATTGCAATGGGACGGACCC
GACTGTTTTTGACCAGCTGTTGGTTCTTCCTTGTGAAACGTAGCTTGAGC
CGACGAAAACCCGGCATGCCGCTTCGTCCCGGCGTGGTAGGGATGCGAGG
CCAAAGAGCTAACGACTGTAATGCGTTACACGAGTAGACGCCCACCCATC
TTACGACGATAGCCAATTAGCTCACTGATGCACAGCGGGGCTGTCGTTCT
CTTTGACCGATTGATGCAGTTCGACGTCCGCCTACCCGGACGCTCTGCTT
TGCCTTGAGAACGCCGGCTGCGAGGGCGACAACCTTCACACTAACCTCAA
GGAGGAGTGCGTGTTCAACCTGTGCAACGAGGAGTTCGCCTGTGTAGGTG
AGGGGAAACCCCGATATCCCCACGAAGGCGTCGTCTCAAGCGAAGGTGTT
TGCCCACGGTTACTGTAAGAAGGTAGAGAACCGAATGGCACGCAAGCAAC
TCGGCCGGCACGTAGTACAGGTTCAATCGACAGCCACTGTCGAAACGGCT
TGCTACAGCGTCGGGACGGGTCTGAGGGAGTTGTCTGCTCCGCTGTCAGC
CCCGCTATAACCCGTTTTGCTGGCCTGCACAACGTTGTCTGTGTAGATTT
GCAGGGCCATTTGATTCCGCCAGAGCGGAGTTGTTGTGCGGGCAGCGCAC
CAAGCGGCTCGTGTGTACCTGTGGCACTCGCCAGCCGTAATGGAGATATC
CCCCCCGGGCCAGTTATTCCAGGAGGGGTGGCGAAGACCGGGTCAAGCTG
TTTCTGTTGGGAAGGGATTTTCGAATTTCGCCCAGGTGGTGTCATGATTG
TTGCTTACGCATGGCGCTTTATCCTCGGGCCTCTCCACTTTGTGCGTTCG
CCAACGGCACATTGACAGCGGCGTACTCCGGCTCTTGGCGACTATCCCCA
GCTGTTGGGACAGCCGTAGTTCTGGCCCTGGCCGTCGCAAGGATACCCAC
GTCGCTTGGATTCGGCCCGGGAGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig89:47136..51013+

>mRNA_E_fasciculatus_S2_contig89.17003.1 ID=mRNA_E_fasciculatus_S2_contig89.17003.1|Name=mRNA_E_fasciculatus_S2_contig89.17003.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=672bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig89:47136..51013+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGACGAGTATGCACAAACGCCGGCCGTTTGAAAGCTCTCCAGAGGG
AGCATTGATGTCGTGTGCCCGTGGAACAAGGCGGCGATGTCGTCACCGCT
CGGCGAGGACCACTTGGAGGCAAACCATGGCCCCTGTTTCTTCACGGGCT
TTATTGTGTTACGTTGCAGCAATATTCTGCCGATCTGTACGAGGCACCAT
CGGCACGTACTATGCGTCCAACTGCTACGAGGTGGGCGGCGGGAATATGG
GCCCTTTGTATCTCGAATGCACCGGCTGCCAGTACACTGAGGCGTTCGAG
TGTCTGCAAACGCTGAGGGGAAACACATCCCATAACGTGCCAAGCGGCTG
CGGGATGAACATTTTGACGGTGCAGCCAGACCCGACCTGCTGCCCAGTTT
TCGAGGACCCAGACAACCAGAGATCACTCGACAGTTCGACGTCCGCCTAC
CCGGACGCTCTGCTTTGCCTTGAGAACGCCGGCTGCGAGGGCGACAACCT
TCACACTAACCTCAAGGAGGAGTGCGTGTTCAACCTGTGCAACGAGGAGT
TCGCCTGTGTAGCGGCGTACTCCGGCTCTTGGCGACTATCCCCAGCTGTT
GGGACAGCCGTAGTTCTGGCCCTGGCCGTCGCAAGGATACCCACGTCGCT
TGGATTCGGCCCGGGAGGGTGA
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