mRNA_E_fasciculatus_S2_contig8891.16993.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8891.16993.1
Unique NamemRNA_E_fasciculatus_S2_contig8891.16993.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8891.16993.1 vs.
Match: Sulfotransfer_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN31_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.340e-59
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILDTLPGGWNWSEESIARAMSLFGPKKPFKEKCGAGFQRASLAEVRAV 291
            MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL+TLPGGWNWSEESIARAMSLFGPKKPFK+KCGAG  RASLAEV  V
Sbjct:  312 MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILNTLPGGWNWSEESIARAMSLFGPKKPFKQKCGAGVPRASLAEVEMV 408
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8891.16993.1 vs.
Match: Sulfotransfer_1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP3_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 3.330e-45
Identity = 73/97 (75.26%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILDTLPGGWNWSEESIARAMSLFGPKKPFKEKCGAGFQRASLAEVRAV 291
            M  K+  +R+YLP+WQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL  LPGGWNWSE+SIA+AM LFGPK  F++KCGAG ++ S+AEV  V
Sbjct:  318 MYKKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPGGWNWSEDSIAKAMRLFGPKTAFEDKCGAGVRQMSVAEVEMV 414
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8891.16993.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP4_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 2.590e-39
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILDTLPGGWNWSEESIARAMS 210
            MAGKA CLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL+TLPGGWNWSEESIARAMS
Sbjct: 1047 MAGKAQCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILNTLPGGWNWSEESIARAMS 1116
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8891.16993.1 vs.
Match: Sulfotransfer_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.640e-33
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILDTLPGGWNWSEESIARAM-SLFGPKKPFK 237
            M  K+  +R+YLP+WQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL  LPGGWNWSE+SIA+AM  +  P++ F+
Sbjct:  318 MYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILHALPGGWNWSEDSIAKAMRQVVRPQESFR 397
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8891.16993.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.940e-29
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    7 GKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRILDTLPGGWNWSEESIARAMSLFGPKKPFKEKCGAGFQRASLAEVRAV 291
            G A  LR +LPVW GHL+HWVA   D+PI  FRYED+L RA++VL ++L  L  GW WS ESI RA+  +GP++PF++KCG      +LAEV  V
Sbjct:  183 GTAEPLRKWLPVWAGHLTHWVADTRDLPIIAFRYEDLLWRADKVLEQVLRALGPGWEWSRESIERAVRTYGPREPFEDKCGKAIPHYTLAEVEMV 277
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8891.16993.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Sulfotransfer_14.340e-5993.81domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Sulfotransfer_13.330e-4575.26domain-containing protein n=1 Tax=Ectocarpus silic... [more]
F-box2.590e-3997.14domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Sulfotransfer_16.640e-3373.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
P-loop1.940e-2953.68containing nucleoside triphosphate hydrolase prote... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8891contigE_fasciculatus_S2_contig8891:3138..4221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score161.4
Seed ortholog evalue2.2e-37
Seed eggNOG ortholog2880.D8LQP3
Model size297
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2EZ9R@1,2T0MS@2759
Cds size297
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842543.8480468-CDS-E_fasciculatus_S2_contig8891:3137..32801696842543.8480468-CDS-E_fasciculatus_S2_contig8891:3137..3280Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8891 3138..3280 +
1696842543.8713555-CDS-E_fasciculatus_S2_contig8891:3693..37591696842543.8713555-CDS-E_fasciculatus_S2_contig8891:3693..3759Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8891 3694..3759 +
1696842543.8863163-CDS-E_fasciculatus_S2_contig8891:4133..42211696842543.8863163-CDS-E_fasciculatus_S2_contig8891:4133..4221Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8891 4134..4221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8891.16993.1prot_E_fasciculatus_S2_contig8891.16993.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8891 3138..4221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8891.16993.1

>prot_E_fasciculatus_S2_contig8891.16993.1 ID=prot_E_fasciculatus_S2_contig8891.16993.1|Name=mRNA_E_fasciculatus_S2_contig8891.16993.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRI
LDTLPGGWNWSEESIARAMSLFGPKKPFKEKCGAGFQRASLAEVRAVL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8891:3138..4221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8891.16993.1 ID=mRNA_E_fasciculatus_S2_contig8891.16993.1|Name=mRNA_E_fasciculatus_S2_contig8891.16993.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1084bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8891:3138..4221+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCGGCAAAGCGCCGTGTTTGAGGGATTACTTGCCGGTGTGGCAGGG
GCACCTATCCCATTGGGTGGCGGCGGCTGGCGACATCCCCATCTACGTCT
TCCGGTACGAAGACATGCTGCTCAGGGCGGAAGAAGTGCTCAGGTATGTG
ATATCCAACGCCTTCCTTACGTCCTGGTTGTTGTTGCCGTTGCCTTGCCG
TCTGTGGTCGTCTGGTCCTAGTTGGCGTCGTTTGGTGTGAACCTGTCGCT
CCGCGGTGCTGCCACAGCGCAGTATTTTTCGGAAGTAGTCCTTACTATTG
GCCGAGATGGTGATAATAAGGAGCTCCCCGAAGGGGGCGAGTGGGCTCGC
TTGCCATCGTCGTCGTGCCCGTGCGTGTTCTCTGCTGCTGGTTCTCTCTG
CTGGTGTTGCTGGTATTTCTGCTGCTGGTGTTGCTGTTGGGGCTTGGTGT
TATTGGTTCTTGTTCTGGTGTTGTTGTTGCTGGTTTTCACTGATGAAACT
GGTGCTTCTGCTGCTGCTGCGTACTCTTGCTGCCTCGACCTTGCCTCGGA
CTACAGGAGAATACTTGACACGCTGCCGGGAGGGTGGAACTGGTCGGAAG
AATCGATCGCCAGGGCGATGAGGTAAATGCCCGTTGTTGCGTCTCCTACG
TTTCTGATTCAGTGTGTGAGGGCTAAACTACACCGCCGCTGCGCGTTGAC
GGGAATGTCGGGATATACGGAGTGCGCTGGCTTGCCATTTGTCCACATAT
TCATTCATGTTAGGAAGCCCGTAATGTAGCTGTGGAACTTCGCACGTTGA
AATCCATTCGTGGCTCTGCTGAGAAAGAATCATGGGGTCTACCTTTAGGC
TAATTCTTTTGTTTGAGCTTTCGAAGGCCTGTTCTACTGCTCTCCTTTTC
GTGCATTGCTTGAACGTGCGGTCGGTCCGTCTAAAATGCCGATTGTCCTG
CGACGACGCCCTGTCTCACTATTTTGGTGGCGTGCCGGGTGTACAGCCTG
TTTGGCCCCAAAAAGCCGTTCAAGGAAAAATGTGGCGCGGGCTTTCAGAG
GGCTAGTCTTGCCGAGGTGAGAGCCGTCCTGTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8891:3138..4221+

>mRNA_E_fasciculatus_S2_contig8891.16993.1 ID=mRNA_E_fasciculatus_S2_contig8891.16993.1|Name=mRNA_E_fasciculatus_S2_contig8891.16993.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8891:3138..4221+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCGGCAAAGCGCCGTGTTTGAGGGATTACTTGCCGGTGTGGCAGGG
GCACCTATCCCATTGGGTGGCGGCGGCTGGCGACATCCCCATCTACGTCT
TCCGGTACGAAGACATGCTGCTCAGGGCGGAAGAAGTGCTCAGGAGAATA
CTTGACACGCTGCCGGGAGGGTGGAACTGGTCGGAAGAATCGATCGCCAG
GGCGATGAGCCTGTTTGGCCCCAAAAAGCCGTTCAAGGAAAAATGTGGCG
CGGGCTTTCAGAGGGCTAGTCTTGCCGAGGTGAGAGCCGTCCTGTAG
back to top