mRNA_E_fasciculatus_S2_contig8888.16990.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G553_ECTSI) HSP 1 Score: 260 bits (665), Expect = 6.210e-77 Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1
Query: 55 QEVKVFAGHEAGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQ 444
+EVKVFAGHEAGVLHAVSNP GNLLVSGGRDSAI+FWDVMSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRYKGHQNTSSSFLRA+LGAEEGLVFGGSDDCKVYVWHRRETQ
Sbjct: 265 KEVKVFAGHEAGVLHAVSNPNGNLLVSGGRDSAIKFWDVMSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRYKGHQNTSSSFLRATLGAEEGLVFGGSDDCKVYVWHRRETQ 394
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLP2_9STRA) HSP 1 Score: 170 bits (431), Expect = 8.560e-42 Identity = 85/194 (43.81%), Postives = 109/194 (56.19%), Query Frame = 1
Query: 70 FAGHEAGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRM--------------------------------GRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTWW 555
F GH A V A N + NL+VSG +D +RFWD++SG+CV TL Q +G VTSV L+ +G++LL SR+ R WD+RM RP+ R+KGHQNT+ + +RAS G E V GGS+D VYVW +LL L GHTG Y W+ Q L+ASCS DGTV+TWW
Sbjct: 380 FMGHSASVCDAQFNRHANLIVSGSKDGTVRFWDILSGLCVHTLRQTLGEVTSVSLSSNGLFLLTGSRNNSNRLWDMRMLTLPRTTLQSSSKDLSNTMKTPASSQTPVSLEQRPVQRFKGHQNTAKNVVRASFGPREAFVLGGSEDGAVYVWDVTTGKLLERLLGHTGVTYSAKWHENQALMASCSHDGTVKTWW 573
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q5T5_9FUNG) HSP 1 Score: 132 bits (332), Expect = 1.160e-29 Identity = 75/219 (34.25%), Postives = 107/219 (48.86%), Query Frame = 1
Query: 61 VKVFAGHEAGVLHAVSNPYGNL----------------LVSGGRDSAIRFWDVMSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVR--------------------------------------MGRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTG-TVYRGTWNAKQGLLASCSEDGTVRTW 552
VK F+GH+ V + NP GNL L + +D+ I+FWD++SG+C++T++ +G VTSV++ GM LL+S DVR + +P+ + KGHQNTS +F+RA A L+ GGS+D VY+W + ++L L GH G VY WN +Q LLASC +D TVRTW
Sbjct: 124 VKTFSGHQLSVSKTIFNPLGNLIERHDSPRFLFAFLPPLTNSSKDNTIKFWDIVSGLCIRTITSHLGEVTSVEMNASGMLLLSSXXXXXXXXXDVRTVSNNADIDHQILIIMEEKSGSCVQHASSHIFPVQGIVLEKPIRKLKGHQNTSKNFIRAGF-AHSNLIVGGSEDGIVYIWDQETGEVLQKLRGHDGGPVYSAVWNNRQSLLASCGDDRTVRTW 341
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=2 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2H8K1_9FUNG) HSP 1 Score: 133 bits (334), Expect = 9.360e-29 Identity = 73/162 (45.06%), Postives = 92/162 (56.79%), Query Frame = 1
Query: 76 GHEAGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRM-GRPLLRYKGHQNTSSSFLRASL-GAEEG-LVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTW 552
GH V P GNL+VSG +DS +RFWD++SG+CV+TL+ +G +RM RPL R KGH NT+ +F+RA+ G +G LV GGS+D YVW R +L L GH G VY WNA+Q LLASCS+DGTVRTW
Sbjct: 537 GHTLAVTAVAFTPMGNLVVSGSKDSTLRFWDLVSGLCVRTLTSHLGEXXXXXXXXXXXXXXXXXXXXXXXXXXMRMLPRPLRRLKGHTNTAKNFVRAAFAGPSDGMLVVGGSEDGVGYVWDRESGAVLQKLRGHRGIVYDVRWNARQQLLASCSDDGTVRTW 698
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNE6_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.680e-28 Identity = 69/167 (41.32%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 61 VKVFAGHEAGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGVCVKTLSQ--AVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRM-GRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTW 552
V+ +GHEA V A P G L+ S RD +RFWDV+SG+CVKTL +G TS+ L+ DG +R RP+ RY GH+N+ SSF+R A + +V GSDD V+VW + L H VYR W+ +QGLLASCS+DG W
Sbjct: 531 VQTLSGHEAAVTEARFTPSGGLIASCARDGTVRFWDVLSGLCVKTLEDPGTIGEATSLALSSDGXXXXXXXXXXXXXXXXLRTTDRPIQRYAGHRNSVSSFIRCDFAAADSVVVSGSDDGAVHVWETATGEPYTTLLAHRAPVYRAAWSPRQGLLASCSQDGEALLW 697
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=3 Tax=Microbotryum TaxID=34416 RepID=A0A2X0MFG1_9BASI) HSP 1 Score: 127 bits (319), Expect = 6.690e-27 Identity = 79/206 (38.35%), Postives = 98/206 (47.57%), Query Frame = 1
Query: 61 VKVFAGHEAGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGVCVKTLS------------------------------------------QAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTW 552
V G+ V A +P G LV+GG D +R +DV SG +KT + +G VTSVD M YLL SSR VR WDVRM RPL R+K H NTS +F+RAS A L+ GS+D +Y+W R +++L L GH G VY WN KQ LLAS DG +RTW
Sbjct: 486 VTTLEGNHGDVYSARWHPSGQHLVTGGYDKIVRLFDVESGTILKTFTGHSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQLGEVTSVD--MSDSYLLTSSRDNSVRLWDVRMLRPLKRFKAHSNTSHNFVRASF-AHASLLVSGSEDGVLYMWDRESSEVLQTLEGHRGIVYGAVWNDKQSLLASHGSDGLIRTW 688
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZ57_ACACA) HSP 1 Score: 125 bits (315), Expect = 9.610e-27 Identity = 62/157 (39.49%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 85 AGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTWW 555
A V H + NPYGNL++SG +D+ ++FWD+ SG+C+KT S +G VTS RP+ R+KGHQNTS +FLRAS G TGTVY TWN Q LLASC +DGTV+TWW
Sbjct: 390 ASVSHVIFNPYGNLIISGSKDNTVKFWDITSGLCIKTYSTYLGEVTSXXXXXXXXXXXXXXXXXXXXXXXXXTARPIRRFKGHQNTSKNFLRASFGPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTVYTTTWNPHQSLLASCGDDGTVKTWW 546
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FLD2_9BASI) HSP 1 Score: 125 bits (315), Expect = 1.860e-26 Identity = 75/192 (39.06%), Postives = 99/192 (51.56%), Query Frame = 1
Query: 37 SWLSVDQEVKVFAGHEAGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGV--------------------CVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTW 552
S + ++ V G++ V A +P G LV+GG D +R +DV SG C++TL+ +G VTSVD M YLL DVRM RPL R+K H NTS +F+RAS A L+ GS+D +Y+W R +++LH L H G V+ WN KQ LLAS DG VRTW
Sbjct: 468 SEVEAERCVTTLEGNQGDVYSARWHPSGQQLVTGGYDKIVRLFDVESGTILKXXXXXXXXXXXXXXXXXCIRTLNAQLGEVTSVD--MSDSYLLXXXXXXXXXXXDVRMLRPLRRFKAHSNTSHNFVRASF-AHSSLLVSGSEDGVLYMWDRESSEVLHTLEEHRGIVFGAVWNDKQSLLASHGSDGLVRTW 656
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2G1L4_9BASI) HSP 1 Score: 123 bits (309), Expect = 8.190e-26 Identity = 75/201 (37.31%), Postives = 96/201 (47.76%), Query Frame = 1
Query: 76 GHEAGVLHAVSNPYGNLLVSGGRDSAIRFWDVMSGVCVKTLS------------------------------------------QAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTW 552
G+ V A +P GN + +GG D +R +DV SG +KT + +G VTSVD M YLL +SR VR WDVRM RPL R+K H NTS +F+RAS A L+ GS+D +Y+W R +++L L GH G VY WN KQ LLAS D +RTW
Sbjct: 409 GNLGDVYAARWHPMGNHIATGGYDKIVRLFDVESGTILKTFTGHSLSISSVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQLGEVTSVD--MSDSYLLTNSRDNSVRLWDVRMLRPLRRFKAHSNTSQNFIRASF-AHSSLLVSGSEDGVLYMWDRESSEVLQTLEGHDGIVYGAVWNDKQSLLASYGSDAKIRTW 606
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Match: WD40 (repeat-containing protein SMU1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNF5_9STRA) HSP 1 Score: 111 bits (278), Expect = 4.000e-25 Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 211 GAVTSVDLTMDGMYLLASSRHGPVRTWDVRM-GRPLLRYKGHQNTSSSFLRASLGAEEGLVFGGSDDCKVYVWHRRETQLLHALSGHTGTVYRGTWNAKQGLLASCSEDGTVRTW 552
G TS+ L+ DG LL S+RHG +R WD+R RP+ RY GH+N+ SSF+R A + +V GSDD V+VW + L H VYR W+ +QGLLASCS+DG W
Sbjct: 12 GEATSLALSSDGTLLLTSTRHGSIRLWDLRTTDRPIQRYAGHRNSVSSFIRCDFAAADSVVVSGSDDGAVHVWETATGEPYTTLLAHRAPVYRAAWSPRQGLLASCSQDGEALLW 126 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8888.16990.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8888.16990.1 >prot_E_fasciculatus_S2_contig8888.16990.1 ID=prot_E_fasciculatus_S2_contig8888.16990.1|Name=mRNA_E_fasciculatus_S2_contig8888.16990.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=133bp MSGVCVKTLSQAVGAVTSVDLTMDGMYLLASSRHGPVRTWDVRMGRPLLRback to top mRNA from alignment at E_fasciculatus_S2_contig8888:1404..5626- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8888.16990.1 ID=mRNA_E_fasciculatus_S2_contig8888.16990.1|Name=mRNA_E_fasciculatus_S2_contig8888.16990.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4223bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8888:1404..5626- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8888:1404..5626- >mRNA_E_fasciculatus_S2_contig8888.16990.1 ID=mRNA_E_fasciculatus_S2_contig8888.16990.1|Name=mRNA_E_fasciculatus_S2_contig8888.16990.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8888:1404..5626- (Ectocarpus fasciculatus EfasUO2)back to top |