mRNA_E_fasciculatus_S2_contig8885.16987.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8885.16987.1
Unique NamemRNA_E_fasciculatus_S2_contig8885.16987.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGG4_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.100e-34
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMGPTSKL 201
            RMGT FDIG+GAVFLVSSAASYVSGDTLVVDGAEW+YKEP+LKPEAVSRMSRAVEQRSR+MGPTSKL
Sbjct:  225 RMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRSMGPTSKL 291
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BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RC56_THAOC)

HSP 1 Score: 78.6 bits (192), Expect = 2.540e-17
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFL-VSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMGP--TSKL 201
            R+GT FDIG+ A++L    + SYVSG T+VVDGAEWLYK PM+  E V  +SR VE +SRA+ P  TSKL
Sbjct:   43 RLGTTFDIGMAALYLSCEGSGSYVSGTTIVVDGAEWLYKPPMVPKEMVKELSRKVEAKSRALQPKLTSKL 112
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BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KZL5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.090e-16
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMGP--TSKL 201
            R+G AFDIG+ AVFL S A  Y++GD LVVDG EWLYK PM+  E V+ +SR VE +SRA  P   SKL
Sbjct:  227 RLGKAFDIGMAAVFLGSEAGDYITGDILVVDGGEWLYKPPMVPKEMVAELSRKVEAKSRAQRPKMVSKL 295
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C746_THAPS)

HSP 1 Score: 79.0 bits (193), Expect = 5.910e-16
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAAS-YVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMGP-TSKL 201
            R+G AFDIG+ AV+L   A+  YVSGD LVVDG EWLYK PM+  E VS +SR VE +SRA+ P  SKL
Sbjct:  230 RLGRAFDIGMAAVYLACDASGGYVSGDVLVVDGGEWLYKPPMVPKELVSELSRKVEAKSRALRPMASKL 298
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR02_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.180e-15
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMG-------PTSKL 201
            RMG   DI L AV+L S A +YVSG TLVVDGAEWL++ P + P  VS +SRA E+ SRAMG       P SKL
Sbjct:  223 RMGATRDIALAAVYLCSGAGAYVSGHTLVVDGAEWLWRAPAVAPREVSALSRAAERGSRAMGVQQQQQQPKSKL 296
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4F3_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 2.580e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMG 186
            RMGT +DIG+  VFL S AAS+V+GDTLVVDGA W++K  ++  EAVS++SR VE+ SR +G
Sbjct:  245 RMGTKWDIGMACVFLASPAASFVTGDTLVVDGAHWMWKPQVVPREAVSKVSRGVEKSSRDVG 306
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSG6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.600e-15
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMGPTSKL 201
            RMG+A +IG  AV+L +  A YV+G+TL+VDG EWLYK PM+  + VS +SR VE+RSRA  P S+L
Sbjct:  364 RMGSATEIGHAAVYLAT--AKYVTGETLIVDGGEWLYKPPMVPKDLVSTLSRKVEKRSRAQAPKSRL 428
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BSN7_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 1.210e-14
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMG---------PTSKL 201
            RMGT +DI +  V+L S AA++VSGDTLVVDGA W++K  +++ E VSR SR VE +SRA+G         P SKL
Sbjct:  228 RMGTKWDIAMAVVYLASPAAAFVSGDTLVVDGANWMWKPKVVEREQVSRASRGVEGQSRAVGTAAGRGGQRPVSKL 303
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLY0_FISSO)

HSP 1 Score: 75.1 bits (183), Expect = 1.550e-14
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMGPTSKL 201
            RMG A++IG  AVFL +  A Y++GD LVVDG +WLYK PM+  E V+++SR VE +SR   P SKL
Sbjct:  230 RMGEAWEIGHAAVFLCT--ARYITGDVLVVDGGQWLYKHPMVPQEMVAKLSRTVESKSRNQAPRSKL 294
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Match: 2,4-dienoyl-CoA (reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LPD4_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 2.090e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 RMGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMSRAVEQRSRAMGPTSKL 201
            RMG   +I    ++L SSA S+VSG TLVVDG EW+Y+ P+   EAV+++SR VE +SRA+G  SK+
Sbjct:  225 RMGERCEIAYACLYLASSAGSFVSGHTLVVDGGEWMYRPPLAPREAVAQLSRGVESKSRAVGVQSKM 291
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8885.16987.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
2,4-dienoyl-CoA2.100e-3492.54reductase ((3E)-enoyl-CoA-producing) n=2 Tax=Ectoc... [more]
Uncharacterized2.540e-1758.57protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
2,4-dienoyl-CoA1.090e-1659.42reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Skele... [more]
2,4-dienoyl-CoA5.910e-1660.87reductase ((3E)-enoyl-CoA-producing) (Fragment) n=... [more]
2,4-dienoyl-CoA2.180e-1556.76reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Tribo... [more]
2,4-dienoyl-CoA2.580e-1559.68reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Chlam... [more]
2,4-dienoyl-CoA8.600e-1556.72reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Pseud... [more]
2,4-dienoyl-CoA1.210e-1452.63reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Edaph... [more]
2,4-dienoyl-CoA1.550e-1455.22reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Fistu... [more]
2,4-dienoyl-CoA2.090e-1452.24reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Helic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8885contigE_fasciculatus_S2_contig8885:2..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D8LGG4
Model size204
KEGG rclassRC00002,RC00043
KEGG koko:K00927,ko:K13237
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04146,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04146
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0016020,GO:0031090,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons2
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.3.1.34,2.7.2.3
Cds size201
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842543.3890653-UTR-E_fasciculatus_S2_contig8885:1..41696842543.3890653-UTR-E_fasciculatus_S2_contig8885:1..4Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8885 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842543.3994956-CDS-E_fasciculatus_S2_contig8885:4..851696842543.3994956-CDS-E_fasciculatus_S2_contig8885:4..85Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8885 5..85 +
1696842543.408802-CDS-E_fasciculatus_S2_contig8885:772..8921696842543.408802-CDS-E_fasciculatus_S2_contig8885:772..892Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8885 773..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8885.16987.1prot_E_fasciculatus_S2_contig8885.16987.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8885 5..892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8885.16987.1

>prot_E_fasciculatus_S2_contig8885.16987.1 ID=prot_E_fasciculatus_S2_contig8885.16987.1|Name=mRNA_E_fasciculatus_S2_contig8885.16987.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp
MGTAFDIGLGAVFLVSSAASYVSGDTLVVDGAEWLYKEPMLKPEAVSRMS
RAVEQRSRAMGPTSKL*
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mRNA from alignment at E_fasciculatus_S2_contig8885:2..892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8885.16987.1 ID=mRNA_E_fasciculatus_S2_contig8885.16987.1|Name=mRNA_E_fasciculatus_S2_contig8885.16987.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=891bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8885:2..892+ (Ectocarpus fasciculatus EfasUO2)
CGCATGGGGACCGCTTTCGACATCGGGTTGGGTGCGGTTTTCCTCGTGAG
CTCGGCGGCGTCGTACGTTTCGGGAGACACACTGGTGAGAGAGTCTATCC
TGCCATTGCTGCTGCTGCTCCTCCGAAACCCGATTGTCAAGGAAATACCG
TCTCGTGCTGGTTGTTAATTCTGCCACAAGACGCCGCGAAATGTTGTGCA
TTTCAATGCAAACGTAGAGGTCAAGTGACGTAATGTGCGGACTGATGTCC
GAACTTTCATGGCACCGCAAAAAACCGTCGCTTCATGGTGTACGGGGCGC
AGATCCCGCTCGACAGTTATCCACTGGAACGCGTCCTTCTGAGGATTTGC
AGTGTACTGAACGGGCAAACGCCGTCATGTGGTGTCCTAGATGGTTTTCG
TACACCGTGGCCTTGCGCTTGTGATCTCCGAAAATCAGATGTCATTGGTA
TCACTTACCTAATACACACACATGCATTGTCGCATGACTATTTAGAACCG
CGCACCCCGTCGTTTGGTCGGCACCTTTCGAATCACCGACAGCAGTCGGC
CTTCCAGATGGTTGCTCTATTGACGTGGGTAAGTGGTATGAGTAGCTTTG
AACGTTGACATCCCCGTGAATGGAAACTAGACGAGTGTTCCGTGTTCGCT
GTTCTACCCACAGAGTGGAAATCAATGGAAGACAATGACCCAGACGCCAT
TTTAGAGATGCAGTAACGCCCGGTTCGTGTTGCCTTTTCGTTTCGTGACC
TCTTGCTTTCCAACTCGGCAGGTCGTGGACGGGGCCGAATGGCTATACAA
GGAACCCATGCTGAAGCCCGAGGCCGTGAGCCGCATGTCGCGAGCGGTGG
AGCAGCGGAGTAGAGCGATGGGACCCACCAGCAAGCTGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8885:2..892+

>mRNA_E_fasciculatus_S2_contig8885.16987.1 ID=mRNA_E_fasciculatus_S2_contig8885.16987.1|Name=mRNA_E_fasciculatus_S2_contig8885.16987.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8885:2..892+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGACCGCTTTCGACATCGGGTTGGGTGCGGTTTTCCTCGTGAGCTC
GGCGGCGTCGTACGTTTCGGGAGACACACTGGTCGTGGACGGGGCCGAAT
GGCTATACAAGGAACCCATGCTGAAGCCCGAGGCCGTGAGCCGCATGTCG
CGAGCGGTGGAGCAGCGGAGTAGAGCGATGGGACCCACCAGCAAGCTGTG
A
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