mRNA_E_fasciculatus_S2_contig8869.16970.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8869.16970.1
Unique NamemRNA_E_fasciculatus_S2_contig8869.16970.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8869.16970.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 5.480e-28
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 MRTRSKAPS-PSKHAATPSKGESVVLPLQDIKVCIADALTQLFDDRKIVGDLVARMAGHATEANAKRAVVAAINSNSKDFIAAAKNAGKEA 270
            MR R+K+ S PSK AATPSK  SVVLPL++I+VCIADALT +F D+KIVG LV +MAG A++A A  AVV AIN+NS++FI AAK+AGKEA
Sbjct:    1 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA 91
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BLAST of mRNA_E_fasciculatus_S2_contig8869.16970.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G4_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.700e-25
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 MRTRSKAPS-PSKHAATPSKGESVVLPLQDIKVCIADALTQLFDDRKIVGDLVARMAGHATEANAKRAVVAAINSNSKDFIAAAKNAGKEA 270
            MR R+K+ S PSK  ATPSK  SVVLPL++IKVCIADALT +F D+KIVG LV +MAG A++A A RAVV AIN+NS +FI AAK AGKEA
Sbjct:  137 MRLRNKSSSTPSKQTATPSKAGSVVLPLEEIKVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMRAVVTAINANSSEFITAAKEAGKEA 227
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BLAST of mRNA_E_fasciculatus_S2_contig8869.16970.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G494_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 6.840e-23
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 MRTRSKAPS-PSKHAATPSKGESVVLPLQDIKVCIADALTQLFDDRKIVGDLVARMAGHATEANAKRAVVAAINSNSKDFIAAAKNAGKEA 270
            MR R+K+ S PSK AATPSK  SVVLPL++IK CIADALT  F D+KIVG LV +MAG A++A A  AV+ AI +NS++FI AAK AGKEA
Sbjct:  212 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIKFCIADALTHAFGDKKIVGTLVDKMAGTASQAKAMSAVMTAITANSREFITAAKEAGKEA 302
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8869.16970.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.480e-2867.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.700e-2568.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.840e-2364.84protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8869contigE_fasciculatus_S2_contig8869:15..284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842541.5875208-CDS-E_fasciculatus_S2_contig8869:14..2841696842541.5875208-CDS-E_fasciculatus_S2_contig8869:14..284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8869 15..284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8869.16970.1prot_E_fasciculatus_S2_contig8869.16970.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8869 15..284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8869.16970.1

>prot_E_fasciculatus_S2_contig8869.16970.1 ID=prot_E_fasciculatus_S2_contig8869.16970.1|Name=mRNA_E_fasciculatus_S2_contig8869.16970.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=90bp
MRTRSKAPSPSKHAATPSKGESVVLPLQDIKVCIADALTQLFDDRKIVGD
LVARMAGHATEANAKRAVVAAINSNSKDFIAAAKNAGKEA
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mRNA from alignment at E_fasciculatus_S2_contig8869:15..284-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8869.16970.1 ID=mRNA_E_fasciculatus_S2_contig8869.16970.1|Name=mRNA_E_fasciculatus_S2_contig8869.16970.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8869:15..284- (Ectocarpus fasciculatus EfasUO2)
ATGAGGACGCGCAGCAAGGCCCCTTCGCCTTCGAAGCATGCGGCCACGCC
TTCGAAGGGTGAATCTGTCGTCCTGCCCCTGCAAGACATCAAGGTCTGCA
TCGCCGACGCCTTGACGCAGTTGTTCGATGACAGGAAGATCGTCGGCGAT
TTGGTCGCAAGGATGGCGGGGCATGCGACCGAAGCGAATGCCAAGAGGGC
AGTGGTGGCAGCCATCAACTCCAACTCCAAGGACTTCATTGCTGCCGCCA
AGAACGCCGGCAAGGAAGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8869:15..284-

>mRNA_E_fasciculatus_S2_contig8869.16970.1 ID=mRNA_E_fasciculatus_S2_contig8869.16970.1|Name=mRNA_E_fasciculatus_S2_contig8869.16970.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8869:15..284- (Ectocarpus fasciculatus EfasUO2)
ATGAGGACGCGCAGCAAGGCCCCTTCGCCTTCGAAGCATGCGGCCACGCC
TTCGAAGGGTGAATCTGTCGTCCTGCCCCTGCAAGACATCAAGGTCTGCA
TCGCCGACGCCTTGACGCAGTTGTTCGATGACAGGAAGATCGTCGGCGAT
TTGGTCGCAAGGATGGCGGGGCATGCGACCGAAGCGAATGCCAAGAGGGC
AGTGGTGGCAGCCATCAACTCCAACTCCAAGGACTTCATTGCTGCCGCCA
AGAACGCCGGCAAGGAAGCA
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