mRNA_E_fasciculatus_S2_contig8866.16967.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8866.16967.1
Unique NamemRNA_E_fasciculatus_S2_contig8866.16967.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 9.120e-27
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 TGAMAAGPGDLPVLLARLLDNLERIDDLDLGQNPWEYPPEAIVAGGIPAVRRYFEAIYMGGTTAVTRPL 207
            TG+MAAGPG LPV LA LLD+LERI  L + QNPWE PP+AIV GGIPAVR YFEAIYMGGTTAVTRPL
Sbjct:  309 TGSMAAGPGTLPVPLACLLDSLERIYRLSVAQNPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTRPL 377
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.560e-23
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 TGAMAAGPGDLPVLLARLLDNLERIDDLDLGQNPWEYPPEAIVAGGIPAVRRYFEAIYMGGTTAVTRPL 207
            TG+MAA PG LPV LARLLD  + +  LDL +NPWE+PPEAIVAGG+ AVR Y+EA++ GGTTAVTRPL
Sbjct:  381 TGSMAARPGTLPVDLARLLDVFDGLRSLDLSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTRPL 449
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.040e-22
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 TGAMAAGPGDLPVLLARLLDNLERIDDLDLGQNPWEYPPEAIVAGGIPAVRRYFEAIYMGGTTAVTRPL 207
            TG+MAA PG LPV LARLLD  + +  LDL +NPWE+PPEAIVAGG+ AVR Y++A++ GGTTAVTRPL
Sbjct:  474 TGSMAARPGTLPVDLARLLDRFDGLVTLDLSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTRPL 542
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH8_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.030e-21
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 GAMAAGPGDLPVLLARLLDNLERIDDLDLGQNPWEYPPEAIVAGGIPAVRRYFEAIYMGGTTAVTRPL 207
            G+MAA  G LPV LARLLD L+ +    +G+NPWE+PPEAIV GG+  VR Y+EA++MGGTTAVTRPL
Sbjct:  184 GSMAARRGTLPVDLARLLDMLDGLSSWKVGRNPWEHPPEAIVGGGLQVVRGYYEAMFMGGTTAVTRPL 251
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.620e-19
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   10 MAAGPGDLPVLLARLLDNLERIDD---LDLGQNPWEYPPEAIVAGGIPAVRRYFEAIYMGGTTAVTRPL 207
            M   PG LPV LA LLD+ +R+     LDL QNPWE+PPEAIV GG+ AVR YFEAI+ GGTT VTRPL
Sbjct:    1 MLCVPGTLPVALASLLDSFDRLHSVGGLDLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTRPL 69
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.310e-17
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   25 GDLPVLLARLLDNLERIDD---LDLGQNPWEYPPEAIVAGGIPAVRRYFEAIYMGGTTAVTRPL 207
            G LPV LA LLD+ +R+     L+L QNPWE+PPEAIV GG+ AVR YFEAI+ GGTT VTRPL
Sbjct:  172 GTLPVALASLLDSFDRLHSVGGLNLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTRPL 235
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.900e-15
Identity = 37/49 (75.51%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   25 GDLPVLLARLLDNLERIDDLDLGQNPWEYPPEAIVAGGIPAVRRYFEAI 171
            G LPV L  LLD L R+ DL L  NPWEYPPEAI AGGIPAVRRYFEAI
Sbjct:   31 GTLPVPLVCLLDTLARVRDLGLAHNPWEYPPEAIAAGGIPAVRRYFEAI 79
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8866.16967.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
LRR-GTPase9.120e-2779.71of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase5.560e-2369.57of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase1.040e-2268.12of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized5.030e-2164.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.620e-1965.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.310e-1765.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.900e-1575.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8866contigE_fasciculatus_S2_contig8866:3437..5171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score107.8
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D7FJV1
Model size207
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons2
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size198
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842541.376303-CDS-E_fasciculatus_S2_contig8866:3436..36181696842541.376303-CDS-E_fasciculatus_S2_contig8866:3436..3618Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8866 3437..3618 -
1696842541.389838-CDS-E_fasciculatus_S2_contig8866:5146..51621696842541.389838-CDS-E_fasciculatus_S2_contig8866:5146..5162Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8866 5147..5162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842541.401994-UTR-E_fasciculatus_S2_contig8866:5162..51711696842541.401994-UTR-E_fasciculatus_S2_contig8866:5162..5171Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8866 5163..5171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8866.16967.1prot_E_fasciculatus_S2_contig8866.16967.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8866 3437..5162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8866.16967.1

>prot_E_fasciculatus_S2_contig8866.16967.1 ID=prot_E_fasciculatus_S2_contig8866.16967.1|Name=mRNA_E_fasciculatus_S2_contig8866.16967.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=66bp
MAAGPGDLPVLLARLLDNLERIDDLDLGQNPWEYPPEAIVAGGIPAVRRY
FEAIYMGGTTAVTRPL
back to top

mRNA from alignment at E_fasciculatus_S2_contig8866:3437..5171-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8866.16967.1 ID=mRNA_E_fasciculatus_S2_contig8866.16967.1|Name=mRNA_E_fasciculatus_S2_contig8866.16967.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1735bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8866:3437..5171- (Ectocarpus fasciculatus EfasUO2)
ACTGGTGCAATGGCAGCCGGGCCAGGTGAAATAAACGAGTCGCTTGACGA
TGGAATTTTCCCAGGGTTTTCTCGGTACGTATACCACCACCCTGGTGAGC
GGTACCGGTATAGTGCCGGTTTGCCGCCGTTGTTGGATTTGAAAACCTGG
GCTAAATTCGCTTCCGATAAACGCAAATGCCACCTACCGCCAAACAATTA
CTCACGTATGGCGTTACCGCCGATAATTACGGGCAGAGGTTGGTTTTACC
GCCTCCGCCAAAGTTGTCTCGCCGAAAAACTCAATACCTCCTACCTCCAA
AACAACTGCCTCCTTATGCCAATACGGCCTGAAGTAAACCGCCATATGGC
AATACCTCTAAATTCTCCACATGGGTACGTTACCGCCGACGGGAAGTACC
CGATGGGCTAAGCGGGCAAAGTCCTCGTCTCGTCGACTGCACGGGCAAAG
TGTGAATCAGAGGTTAGATCACATGCACTTTTGTTCGTTTTTGCGTTTTT
TTCCTTGTAGTTTTTGGGCATAAAACGTGAAGACCGCTAGCGAAAACGCG
AAGCAAGCGTTCAAATTACGTGTGCAGTTGGCGAAGAAGTCTGCCGGTAG
TTCGGGCGCCGTAACGTGGCACCGTATTGCCGCCTGTTTCGGTAGCGCTT
GAATTTTCGGCCATACGGCGTCCAATACCGCTCGTGAGATACCGCTCCGG
TAGCCGGCACCGGCATACCGCCGATTTACCTCTGGTGATTGGTTGTACCG
CCTCCACCAAAGCCTTTACCGCCGAAACAAGTATATTCCGCCCACCGCCA
AAAAAGTACCTCCATTCTTGGTTTTTTACGCCTCCGCCAAAGTCGTTACC
GCCAAAACAACTCAACACCACCTACCGCCGAAACGATAACCGCCGCATGG
CATTGCCGCAGAAAATGTGTTAAGCCTATAAAAACGTTTCCGAGTATAAG
CCCTTGATCTGTTTCGGGGTACGTAGACCATTGTCATGGGAACGGATGTG
ACCTTTGGGCGATGGCGCGCACCTCGTCTATCGTGTGCTTTGCATTGCAT
TCTCGTGCTTGGGAATTGGGGAGCCTACAGCAGTAGGTTGAAAAATACGA
CTGCGCCAGAGCCCCGTTGAATGGTTGCGCGGAGAAAGCTCTGTTGACAG
GACTAGTGCGCTTCTGCTCAGCGAGTGAAGCAAGCATCCAGATTCGGCCA
AAAGCTCGCTGTTTTTTCTCGCGCGTACGTACTTGTCCACGTGGTTTGAT
ACAATCGCGTCCCCCGATTTCAAGAGACCGACCCAAGCACCTCTTCCAGC
CTAGTTCGGAAAAACGTTGGGTTTGTCAGTCGGCGCCAAGCAAGTTCGAA
CCTTGTTTTTCGGGTAGGCATTGCATCTCTGCAACTGGAAACGCGTTGTT
GCGGACACGGAGGGTAGGTGACCAAAATATTGGTCATCGACGGCGAGTCG
CGCGGGATGCACGCATGCACACCCATGTTGGGCCGTTGACAGCATGTCAT
TGCATGTCCCCGCCCGACCGCATGTCTTGCGTTTCATACTGACGTTTTTT
TAGGTGACCTTCCGGTGCTATTAGCCCGTCTTTTAGACAACCTTGAACGG
ATTGACGATTTGGACCTTGGCCAAAACCCGTGGGAGTACCCTCCGGAGGC
GATCGTGGCGGGTGGTATACCGGCGGTGAGAAGGTACTTCGAAGCCATCT
ACATGGGCGGCACTACCGCTGTGACCCGACCTCTC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8866:3437..5171-

>mRNA_E_fasciculatus_S2_contig8866.16967.1 ID=mRNA_E_fasciculatus_S2_contig8866.16967.1|Name=mRNA_E_fasciculatus_S2_contig8866.16967.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8866:3437..5171- (Ectocarpus fasciculatus EfasUO2)
ATGGCAGCCGGGCCAGGTGACCTTCCGGTGCTATTAGCCCGTCTTTTAGA
CAACCTTGAACGGATTGACGATTTGGACCTTGGCCAAAACCCGTGGGAGT
ACCCTCCGGAGGCGATCGTGGCGGGTGGTATACCGGCGGTGAGAAGGTAC
TTCGAAGCCATCTACATGGGCGGCACTACCGCTGTGACCCGACCTCTC
back to top