mRNA_E_fasciculatus_S2_contig8866.16965.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8866.16965.1
Unique NamemRNA_E_fasciculatus_S2_contig8866.16965.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.300e-61
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 1 
Query:    1 AHGHQPPGISLEDGVSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPGLFHRIIYNPADDTRTVTMPLPQSYRLALEMLEELASSSRSKTEQ-TRGMTRAILEEKWQAKVADLTRAGTPVAAPDAAMSGAILIR 393
            A GHQP GISLEDGVSLVSCA S +G VAPSFGR SGWPCDKSTPGLFHRIIY+  DDTR VTM LP+SYRLALEMLEELAS SRSKTEQ TRG+TRAILEEKWQAKVA++ RAGT VAAPDAAM+GAILIR
Sbjct:  527 ARGHQPRGISLEDGVSLVSCAASGVGAVAPSFGRRSGWPCDKSTPGLFHRIIYDSTDDTRVVTMRLPESYRLALEMLEELASCSRSKTEQQTRGITRAILEEKWQAKVAEMNRAGTSVAAPDAAMAGAILIR 658
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BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 3.240e-59
Identity = 106/132 (80.30%), Postives = 115/132 (87.12%), Query Frame = 1 
Query:    1 AHGHQPPGISLEDGVSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPGLFHRIIYNPADDTRTVTMPLPQSYRLALEMLEELASSSRSKTEQ-TRGMTRAILEEKWQAKVADLTRAGTPVAAPDAAMSGAILIR 393
            AHGHQP G+SLEDGVSLVSCA S LG+ AP+FG G+GWPCDKSTPGLFHR+IY+P DD RTVTM LP SYRLALEMLEELASSSR K EQ TRG+TRA LEEKW AKVA+L  AGTPVAAP+AAM GAILIR
Sbjct:  691 AHGHQPHGLSLEDGVSLVSCAQSGLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAKVAELNGAGTPVAAPEAAMPGAILIR 822
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BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.710e-59
Identity = 106/132 (80.30%), Postives = 115/132 (87.12%), Query Frame = 1 
Query:    1 AHGHQPPGISLEDGVSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPGLFHRIIYNPADDTRTVTMPLPQSYRLALEMLEELASSSRSKTEQ-TRGMTRAILEEKWQAKVADLTRAGTPVAAPDAAMSGAILIR 393
            AHGHQP G+SLEDGVSLVSCA S LG+ AP+FG G+GWPCDKSTPGLFHR+IY+P DD RTVTM LP SYRLALEMLEELASSSR K EQ TRG+TRA LEEKW AKVA+L  AGTPVAAP+AAM GAILIR
Sbjct:  598 AHGHQPHGLSLEDGVSLVSCAQSCLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAKVAELNGAGTPVAAPEAAMPGAILIR 729
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BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 4.460e-55
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    1 AHGHQPPGISLEDGVSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPGLFHRIIYNPADDTRTVTMPLPQSYRLALEMLEELASSSRSKTEQ-TRGMTRAILEEKWQAKVADLTRAGTPVAAPDAAMSGAILIR 393
            A GHQP GISLEDGVSLVSCA S +G+VAPSFG GSGWP DK+TPGL+ RI YN A  TR VTM LP+SYRLAL+MLEELAS SRSKTEQ  RG+TRAILE+KWQ KVA++ R GT V+APDAAM+GAILIR
Sbjct:  237 ARGHQPRGISLEDGVSLVSCAASGVGVVAPSFGAGSGWPFDKNTPGLYRRIAYNSASRTRAVTMHLPESYRLALKMLEELASCSRSKTEQHIRGVTRAILEDKWQTKVAEMNRVGTSVSAPDAAMAGAILIR 368
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BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: G (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.510e-46
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:   43 VSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPGLFHRIIYNPADDTRTVTMPLPQSYRLALEMLEELASSSRSKTEQ-TRGMTRAILEEKWQAKVADLTRAGTPVAAPDAAMSGAILI 390
            ++LVSC+PS LGI+APSFG  + WPC KSTP LFHRII+NP DD R VTM +P  Y++ALEMLEELASSSR K EQ TRG+TRA LE+KWQAKVA+L  AGTPVAAP+AAMSGAILI
Sbjct:  264 LNLVSCSPSGLGILAPSFGARTDWPCGKSTPELFHRIIFNPVDDKRAVTMHIPPGYQVALEMLEELASSSRRKAEQRTRGITRADLEQKWQAKVAELNSAGTPVAAPEAAMSGAILI 380
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BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM38_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.030e-40
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    1 AHGHQPPGISLEDGVSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPGLFHRIIYNPADDTRTVTMPLPQSYRLALEMLEELASSSR 255
            AHGHQP  +SLE+GVSLV+CA SDLG+ AP+FG G+GWPCDKSTPGLFHR+IYNP DD RTVTM LP SY +ALEMLEELASSSR
Sbjct:  158 AHGHQPHRLSLENGVSLVTCAQSDLGVSAPAFGGGTGWPCDKSTPGLFHRMIYNPVDDKRTVTMHLPPSYHVALEMLEELASSSR 242
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.200e-28
Identity = 74/134 (55.22%), Postives = 79/134 (58.96%), Query Frame = 1 
Query:    1 AHGHQPPGISLEDGVSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPG---LFHRIIYNPADDTRTVTMPLPQSYRLALEMLEELASSSRSKTEQTRGMTRAILEEKWQAKVADLTRAGTPVAAPDAAMSGAILIR 393
            AH HQPP +SLE GVSLVSCAPS     APSFG    WPCDK+ PG   LF RIIYNP DD R VTM L   Y LAL +LEELAS SR                     V  L  AGT  AA +AA+SGAILIR
Sbjct:  225 AHRHQPPQLSLEAGVSLVSCAPSGRAGWAPSFGGRKAWPCDKNKPGQPGLFRRIIYNPVDDMRAVTMRLSPVYVLALNLLEELASRSR---------------------VDALGTAGTTAAASEAALSGAILIR 337
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.940e-10
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  271 TRGMTRAILEEKWQAKVADLTRAGTPVAAPDAAMSGAILIR 393
            TRG+TRA LEEKWQAKVA+L+ AGTPVAAP+AA+SGAILIR
Sbjct:   22 TRGITRADLEEKWQAKVAELSGAGTPVAAPEAAISGAILIR 62
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8866.16965.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
LRR-GTPase1.300e-6184.09of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase3.240e-5980.30of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase5.710e-5980.30of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized4.460e-5575.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
G3.510e-4673.50domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.030e-4078.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.200e-2855.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.940e-1082.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8866contigE_fasciculatus_S2_contig8866:1196..1890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score214.9
Seed ortholog evalue2.2e-53
Seed eggNOG ortholog2880.D7FJV1
Model size396
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons2
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size396
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842541.2600908-CDS-E_fasciculatus_S2_contig8866:1195..13371696842541.2600908-CDS-E_fasciculatus_S2_contig8866:1195..1337Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8866 1196..1337 -
1696842541.2734501-CDS-E_fasciculatus_S2_contig8866:1636..18901696842541.2734501-CDS-E_fasciculatus_S2_contig8866:1636..1890Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8866 1637..1890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8866.16965.1prot_E_fasciculatus_S2_contig8866.16965.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8866 1196..1890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8866.16965.1

>prot_E_fasciculatus_S2_contig8866.16965.1 ID=prot_E_fasciculatus_S2_contig8866.16965.1|Name=mRNA_E_fasciculatus_S2_contig8866.16965.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=132bp
AHGHQPPGISLEDGVSLVSCAPSDLGIVAPSFGRGSGWPCDKSTPGLFHR
IIYNPADDTRTVTMPLPQSYRLALEMLEELASSSRSKTEQTRGMTRAILE
EKWQAKVADLTRAGTPVAAPDAAMSGAILIR*
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mRNA from alignment at E_fasciculatus_S2_contig8866:1196..1890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8866.16965.1 ID=mRNA_E_fasciculatus_S2_contig8866.16965.1|Name=mRNA_E_fasciculatus_S2_contig8866.16965.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=695bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8866:1196..1890- (Ectocarpus fasciculatus EfasUO2)
GCGCACGGACATCAACCCCCCGGGATTTCGTTGGAAGACGGCGTCAGTCT
CGTGAGCTGTGCGCCGTCTGATCTAGGCATAGTTGCACCATCATTCGGTA
GGGGATCGGGCTGGCCCTGCGACAAGAGTACGCCGGGGCTTTTCCATCGC
ATCATATACAACCCTGCCGATGACACGAGGACTGTCACCATGCCTCTTCC
CCAGAGCTACCGACTCGCCCTCGAGATGCTTGAGGAGCTGGCATCATCCA
GTAGGTGAGGTCCTAGATGCCACGTCTGTGTCGCCATTTCATGTGTGACA
TACTCTTCCCATGCCGTCCAATACATGTATGTCGATGCGCACATGACTGG
CGTAATCAATATATAGAGTATGTGTTTTCCACATGGAGCGATAGCGTTGC
TGTGTCCGCTCATGTTGATCCGCACCTTAGCTCGACAAATGATCAAGCAA
TACGCCACAATTGTGCACGCGTTTATTCTTTTTCCACGGTATCTTCGCGA
ATTGATGGATAGAAGCTGTGCTCCTCCTCTTGATGGCACCGCTGTTGTTC
CAGGAGCAAGACCGAACAAACTCGTGGCATGACAAGAGCGATTTTGGAAG
AAAAGTGGCAAGCCAAGGTGGCTGACCTGACCAGAGCCGGAACGCCAGTA
GCGGCCCCGGACGCGGCCATGTCTGGTGCCATCTTGATCAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8866:1196..1890-

>mRNA_E_fasciculatus_S2_contig8866.16965.1 ID=mRNA_E_fasciculatus_S2_contig8866.16965.1|Name=mRNA_E_fasciculatus_S2_contig8866.16965.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8866:1196..1890- (Ectocarpus fasciculatus EfasUO2)
GCGCACGGACATCAACCCCCCGGGATTTCGTTGGAAGACGGCGTCAGTCT
CGTGAGCTGTGCGCCGTCTGATCTAGGCATAGTTGCACCATCATTCGGTA
GGGGATCGGGCTGGCCCTGCGACAAGAGTACGCCGGGGCTTTTCCATCGC
ATCATATACAACCCTGCCGATGACACGAGGACTGTCACCATGCCTCTTCC
CCAGAGCTACCGACTCGCCCTCGAGATGCTTGAGGAGCTGGCATCATCCA
GTAGGAGCAAGACCGAACAAACTCGTGGCATGACAAGAGCGATTTTGGAA
GAAAAGTGGCAAGCCAAGGTGGCTGACCTGACCAGAGCCGGAACGCCAGT
AGCGGCCCCGGACGCGGCCATGTCTGGTGCCATCTTGATCAGGTGA
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