mRNA_E_fasciculatus_S2_contig8866.16964.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 2.120e-145 Identity = 211/245 (86.12%), Postives = 223/245 (91.02%), Query Frame = -2
Query: 8 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVTDVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRHKRKGMKIRT 742
RKWEGGLVEYGS++FLDVEWFATVLDPLFCHKRD+ G IDLGG+RV DVDSLDR DEEHV EPQLA +LWGP LAPHLL ALKSAGLTFPL NDSNGGLVILLRMDTKPPP+YGIKL+E DQANKFDLRLVVECSF LGLPPGFVERLLARCCHLGLP+PFWRYGALIVG GAEE +FSLSL+YSE RK+L +EVSGG TEV AWAALS VLSVTIKML EFPGLPCRTTFFCP HK GMKIRT
Sbjct: 658 RKWEGGLVEYGSYVFLDVEWFATVLDPLFCHKRDSYGKIDLGGIRVMDVDSLDRLDEEHVLEPQLAEDLWGPVLAPHLLLALKSAGLTFPLSNDSNGGLVILLRMDTKPPPDYGIKLKEKDQANKFDLRLVVECSFRLGLPPGFVERLLARCCHLGLPYPFWRYGALIVGKGAEERMFSLSLEYSEARKILTVEVSGGHTEVFAWAALSKVLSVTIKMLLEFPGLPCRTTFFCPLHKTNGMKIRT 902
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE) HSP 1 Score: 399 bits (1026), Expect = 1.270e-135 Identity = 189/247 (76.52%), Postives = 212/247 (85.83%), Query Frame = -2
Query: 2 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVTDVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRHKRKGMKIRTTN 742
RKWEGGLVEYG+++FLDVEWFATVLDPLF H+RD+ G+IDLGG+RVT++ SL R D EHVFEPQLA ELW ELAPHLL ALKSAGLTFPLPND NGGLVILLRMDTK PPEY I+ +EA+QA K+DL L V C FSLG+PPGFVERLLARCC LG+P+PFWRYGAL+VG+GAEEGLFSLSL YSE +L +EV GG EVHAWAALS VLSV IKMLSEFPGLPC FFCP+HK KGM +RTT+
Sbjct: 62 RKWEGGLVEYGNYVFLDVEWFATVLDPLFSHRRDSYGDIDLGGIRVTNIASLRRLDNEHVFEPQLAEELWSRELAPHLLLALKSAGLTFPLPNDPNGGLVILLRMDTKSPPEYSIRREEANQARKYDLTLTVACWFSLGVPPGFVERLLARCCRLGVPYPFWRYGALVVGNGAEEGLFSLSLDYSEHDNMLKVEVLGGGGEVHAWAALSKVLSVMIKMLSEFPGLPCEPIFFCPQHKTKGMPVRTTD 308
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE) HSP 1 Score: 394 bits (1012), Expect = 4.040e-130 Identity = 195/246 (79.27%), Postives = 207/246 (84.15%), Query Frame = -2
Query: 8 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVTDVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFP-LPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRHKRKGMKIRT 742
RKWEGGLVEY S++FLDVEWFATVLDPLFCHKRD+ G I LGGMRVTDVD LDR DE+HV EPQLA E W FP LPNDSNGGLVILLRMDTKP P+YGIKL+EADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLP+PFWRYGALIVG GAE +FSLSL+YSE+RK+L +EVSGGRTEV AWAALS VLSVTIKMLSEFPGLPC TTFFCP HK K MKIRT
Sbjct: 368 RKWEGGLVEYSSYVFLDVEWFATVLDPLFCHKRDSYGKIYLGGMRVTDVDGLDRLDEDHVLEPQLAEEDW-----------------RFPSLPNDSNGGLVILLRMDTKPSPDYGIKLKEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPYPFWRYGALIVGKGAEVRMFSLSLEYSEERKILTVEVSGGRTEVFAWAALSKVLSVTIKMLSEFPGLPCGTTFFCPLHKTKRMKIRT 596
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI) HSP 1 Score: 406 bits (1043), Expect = 5.150e-130 Identity = 193/247 (78.14%), Postives = 217/247 (87.85%), Query Frame = -2
Query: 2 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVTDVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRHKRKGMKIRTTN 742
RKWEGGLVEYG+++FLDVEWFATVLDPLF H+RD+ G+IDLGG+RVT++ SL R D EHVFEPQLA ELW PELAPHLL ALKSAGLTFPLPND NGGLVILLRMDT PPEYGIKL++ +A++ DLRL V CSFSLGLPPGFVERLLARCCH+G P PFWRYGALIVG+GAE+GLFSLS++YSE+ K+LA+EV GG EVHAWAALS VLSV IKMLSEFPGLPC FFCP+HK KGM IRTT+
Sbjct: 822 RKWEGGLVEYGNYVFLDVEWFATVLDPLFSHRRDSYGDIDLGGIRVTNLASLRRLDNEHVFEPQLAEELWTPELAPHLLLALKSAGLTFPLPNDPNGGLVILLRMDTTRPPEYGIKLEQVHKASEADLRLTVACSFSLGLPPGFVERLLARCCHMGYPFPFWRYGALIVGNGAEKGLFSLSVEYSEEDKILALEVFGGCEEVHAWAALSKVLSVMIKMLSEFPGLPCELMFFCPQHKTKGMPIRTTD 1068
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 7.730e-130 Identity = 193/247 (78.14%), Postives = 213/247 (86.23%), Query Frame = -2
Query: 2 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVTDVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRHKRKGMKIRTTN 742
RKWEGGLVEYG+++FLDVEWFATVLDPLF H+RD+ G+IDLGG+RVT++ SL R D EHVFEPQLA ELW PELAPHLL ALKSAGLTFPLPND NGGLVILLRMDT PPEY I+ +EA+QA K+DL L V CSFSLGLPPGFVERLLARCCHLG P+PFWRYGALIVG+GAE+GLFSLSL YSE +L +EV GG EVHAWAALS VLSV IKMLSEFPGLPC FFCP+HK KGM IRTT+
Sbjct: 729 RKWEGGLVEYGNYVFLDVEWFATVLDPLFSHRRDSYGDIDLGGIRVTNLASLRRLDNEHVFEPQLAEELWTPELAPHLLLALKSAGLTFPLPNDPNGGLVILLRMDTTRPPEYSIRREEANQARKYDLTLSVACSFSLGLPPGFVERLLARCCHLGYPYPFWRYGALIVGNGAEKGLFSLSLDYSEHDNMLKVEVLGGGEEVHAWAALSKVLSVMIKMLSEFPGLPCEPIFFCPQHKTKGMPIRTTD 975
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE) HSP 1 Score: 363 bits (933), Expect = 1.780e-117 Identity = 171/247 (69.23%), Postives = 200/247 (80.97%), Query Frame = -2
Query: 2 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVTDVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRHKRKGMKIRTTN 742
RKWEGGLVEYG++IFLDV WFA VLDPLF HK+D+ G I LGG VT+ DSL R D H+FEP+LA +LWG ELAPHLLSAL SAGLTFP+PND GLV++LRMDT+PPP+Y ++E +DLRLVV+CSF LGLPPGFVERLLARCCHLG PHPFWRYGAL+VG GAEEG FSL+L+YSE+ K L ++V+G +EVHAWA LS VLSVTIKMLSEFPGLPC+ F CPRH+ K M++ N
Sbjct: 337 RKWEGGLVEYGNYIFLDVGWFADVLDPLFSHKKDSNGIIYLGGKTVTNDDSLKRLDANHIFEPRLAEDLWGAELAPHLLSALNSAGLTFPIPNDPFEGLVVVLRMDTEPPPDYRTIVEEEQARKYYDLRLVVQCSFRLGLPPGFVERLLARCCHLGFPHPFWRYGALVVGAGAEEGKFSLTLEYSEEDKTLKVQVNGRCSEVHAWATLSKVLSVTIKMLSEFPGLPCQLEFLCPRHEDKSMRVLKAN 583
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED3_9PHAE) HSP 1 Score: 332 bits (852), Expect = 1.690e-110 Identity = 160/244 (65.57%), Postives = 189/244 (77.46%), Query Frame = -2
Query: 14 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVT-DVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRHKRKGMKI 742
KWEGGLVEYGS++FLDV+WFA VLDPLF HKR+ G+IDLGG VT +V SL R D +H+FEP+LA ELWGP+LA HLL+ALKSAGLTFP+PND N GLVIL+RM KPPP Y KL++A A K+DL+L+ C F LGLPPG +ER+LARCC LG P+PFWRYGALI G+G + G FS L+YS++ KLL I V GGR +V AWA LS VLSV IKMLSE+ GLPC FCP H+ K M I
Sbjct: 5 EKWEGGLVEYGSYVFLDVQWFAEVLDPLFSHKRNLYGSIDLGGRSVTKNVRSLRRLDNDHIFEPRLAEELWGPDLARHLLAALKSAGLTFPMPNDPNEGLVILVRMKDKPPPGYDTKLKQAIAARKYDLKLIFHCKFRLGLPPGLIERILARCCQLGHPYPFWRYGALISGEGGQ-GSFSADLRYSDENKLLEIVVHGGREKVDAWATLSKVLSVLIKMLSEYGGLPCEPQLFCPLHEEKSMPI 247
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: G (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE) HSP 1 Score: 238 bits (607), Expect = 5.090e-71 Identity = 127/195 (65.13%), Postives = 145/195 (74.36%), Query Frame = -2
Query: 83 LFCHKRDACGNIDLGGMRV-TDVDS-LDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLS 661
L HKRD G+IDLGG+RV D + LDR D +HVFEP+LA LW PELA HLL ALKSAGLTFPLP DSNGGLVI LRMDT PEYGIKL++ +A++ DL+L V+CSFSLGLP GFVER LA+CCH+G P+PFWRYGALIV DG K+LA+EV GG EVHAWAALS VLSV IKML+
Sbjct: 379 LISHKRDLDGHIDLGGIRVPNDARARLDRLDRDHVFEPKLAEGLWSPELASHLLLALKSAGLTFPLPQDSNGGLVINLRMDTTRLPEYGIKLEQVHKASEPDLKLTVKCSFSLGLPLGFVERFLAQCCHVGYPYPFWRYGALIVDDGD---------------KILALEVFGGCEEVHAWAALSKVLSVVIKMLT 558
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM75_ECTSI) HSP 1 Score: 197 bits (502), Expect = 2.770e-54 Identity = 108/238 (45.38%), Postives = 142/238 (59.66%), Query Frame = -2
Query: 35 WEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDACGNIDLGGMRVTDVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPHPFWRYGALIVGDGAEEGLFSLSLQYSEKRKLL----AIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRH 736
+EG LV YGSF+ +DV+W ATVL PL HK + G ++LGG+ V ++R ++ + EP+LA ELW P+ HLL AL SAGLTFP PND GGLV+LLR+D P + G L + ++ D ++V C+ G PPGF+ERLL+ CC LG + FWRYG LI FS+ L+Y+E L +++ G W ALS LSV KMLSEFPG+ T CP H
Sbjct: 653 YEGSLVVYGSFVIVDVQWLATVLKPLCSHKDMSMGEVNLGGITVRPGPRVERLVKDGILEPKLAEELW-PDTWEHLLRALSSAGLTFPRPNDKEGGLVVLLRLDKDRPDDVGDILDDFRASH--DGQIVASCTLLQGAPPGFIERLLSTCCRLGSCNHFWRYGVLIQSRS-----FSVILEYAEDDDTLVGKFSVDAFGDSRTAGPWLALSGCLSVLSKMLSEFPGMDVEATLECPYH 882
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 160 bits (405), Expect = 2.050e-41 Identity = 99/253 (39.13%), Postives = 136/253 (53.75%), Query Frame = -2
Query: 35 RKWEGGLVEYGSFIFLDVEWFATVLDPLFCHKRDAC--GNIDLGGMRVT--------DVDSLDRFDEEHVFEPQLATELWGPELAPHLLSALKSAGLTFPLPNDSNGGLVILLRMDTKPPPEYGIKLQEADQANKFDLRLVVECSFS----LGLPPGFVERLLARCCHLGLPHPFWRYGALIVGD-GAEEG--LFSLSLQYSEKRKLLAIEVSGGRTEVHAWAALSNVLSVTIKMLSEFPGLPCRTTFFCPRH 742
R+++G LV + F+FLDV W A +L PL HK G ++LG T D+ S DR +E V EP+LA +W L+ ++L L S G TFPL ND + GLV+LLR+ P G + + F L S S LG+PPG VE++L RCC LG+ FWRYG L+ G GA++G F++ L+YS L ++ G + AW ALS V+S ML +FPGL + + CP H
Sbjct: 210 REFDGSLVRHEKFVFLDVVWLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDIKSWDRLKKEGVLEPRLAYAMWPDGLSEYVLPTLASLGFTFPLENDPDEGLVVLLRLTPNRPESVGKVI------DTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEH 456 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8866.16964.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8866.16964.1 >prot_E_fasciculatus_S2_contig8866.16964.1 ID=prot_E_fasciculatus_S2_contig8866.16964.1|Name=mRNA_E_fasciculatus_S2_contig8866.16964.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=211bp MPFLLCRGQKNVVRHGKPGNSESILIVTERTLDRAAHAWTSVRPPDTSIAback to top mRNA from alignment at E_fasciculatus_S2_contig8866:178..920+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8866.16964.1 ID=mRNA_E_fasciculatus_S2_contig8866.16964.1|Name=mRNA_E_fasciculatus_S2_contig8866.16964.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=743bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8866:178..920+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8866:178..920+ >mRNA_E_fasciculatus_S2_contig8866.16964.1 ID=mRNA_E_fasciculatus_S2_contig8866.16964.1|Name=mRNA_E_fasciculatus_S2_contig8866.16964.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=633bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8866:178..920+ (Ectocarpus fasciculatus EfasUO2)back to top |