mRNA_E_fasciculatus_S2_contig8865.16963.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8865.16963.1
Unique Name	mRNA_E_fasciculatus_S2_contig8865.16963.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.740e-35
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            MSKVR LRSE I ARLEKK+AALEG+TLR+GKVAT MGF+PFGKHGFLRRRAREHAEAH+GEATLSITKKG L
Sbjct:    1 MSKVRALRSENIAARLEKKKAALEGQTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGL 73

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BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.740e-33
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            MSKVR LRSE I ARLEKKRAALEGRTLR+GKVAT MGF+PFGKHGFLRRRAREHAEAHMGEATLSITKKG L
Sbjct:  365 MSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGL 437

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BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.180e-28
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            MSKVR LRSE I A LEKKR A EGRTLR+GK+AT MGFMPFGKHGFLRRRAREH EA+MGEATLSIT KG L
Sbjct:  295 MSKVRALRSENIVAGLEKKRVAREGRTLREGKLATLMGFMPFGKHGFLRRRAREHVEAYMGEATLSITNKGGL 367

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDV1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.820e-25
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1

Query:   16 GLRSEIIGARLEKKRAALEGRTLRK-GKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            GLRSEI  A LEK++AALEGR L K GKV T MGF+PFGK+GF  RRAREHAEAHMGEATLS+TKKG+L
Sbjct:   63 GLRSEIFEANLEKRKAALEGRELPKEGKVDTLMGFLPFGKNGFRGRRAREHAEAHMGEATLSLTKKGNL 131

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BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 6.180e-24
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            MSKV GLR+EI+  R E ++ A+EGR L K K+ T +GF+PFGKHGF RRRAREHA AH+GEATLS+T  GDL
Sbjct:   47 MSKVEGLRAEIMEEREEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNTGDL 119

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BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ57_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.410e-23
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTL-RKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            M   +GLRSEI  A LEK++AALEGR L +KGKVA  MGF+P GK+GF RRRAREHAEAH+GEATLS+T KG+L
Sbjct:  394 MLNAQGLRSEIFEANLEKRKAALEGRELPKKGKVAALMGFLPLGKNGFRRRRAREHAEAHLGEATLSLTTKGNL 467

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.540e-23
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            M+K    RSEII  RL KK A  EGRTL+K K++TFMGF+PFGK GFL RRAR+ AEAH+GEATL +T KG L
Sbjct:   47 MAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGIL 119

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.850e-20
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            MS V GL++EI+    E ++  +EGR L+K K+   +GF+PFGKHGF RRR REHA AH+GEATLS+T KGDL
Sbjct:  186 MSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAHLGEATLSVTNKGDL 258

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BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.470e-20
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1

Query:    1 MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            MS V GLR+EI+    E ++AA+EG+ L++ K+ T +GF+PFGKHGF RRRARE A AH+GEA LS+T KGDL
Sbjct:  359 MSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDL 431

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.150e-18
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1

Query:   49 EKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRRRAREHAEAHMGEATLSITKKGDL 219
            E ++ A+EGR L K K+ T +GF+PFGKHGF RRRAREH  AH+GEATLS+T KGDL
Sbjct:    6 EAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDL 62

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8865.16963.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
Uncharacterized	3.740e-35	86.30	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.740e-33	90.41	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.180e-28	82.19	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.820e-25	76.81	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	6.180e-24	65.75	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	5.410e-23	70.27	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	6.540e-23	65.75	protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	3.850e-20	58.90	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.470e-20	60.27	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.150e-18	66.67	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8865	contig	E_fasciculatus_S2_contig8865:2763..2981 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	1
Model size	219
Hectar predicted targeting category	other localisation
Exons	1
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-03_004270.1
Cds size	219

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842541.173946-CDS-E_fasciculatus_S2_contig8865:2762..2981	1696842541.173946-CDS-E_fasciculatus_S2_contig8865:2762..2981	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8865 2763..2981 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8865.16963.1	prot_E_fasciculatus_S2_contig8865.16963.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8865 2763..2981 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8865:2763..2981-
coding sequence from alignment at E_fasciculatus_S2_contig8865:2763..2981-

protein sequence of mRNA_E_fasciculatus_S2_contig8865.16963.1

>prot_E_fasciculatus_S2_contig8865.16963.1 ID=prot_E_fasciculatus_S2_contig8865.16963.1|Name=mRNA_E_fasciculatus_S2_contig8865.16963.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp
MSKVRGLRSEIIGARLEKKRAALEGRTLRKGKVATFMGFMPFGKHGFLRR
RAREHAEAHMGEATLSITKKGDL

mRNA from alignment at E_fasciculatus_S2_contig8865:2763..2981-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8865.16963.1 ID=mRNA_E_fasciculatus_S2_contig8865.16963.1|Name=mRNA_E_fasciculatus_S2_contig8865.16963.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8865:2763..2981- (Ectocarpus fasciculatus EfasUO2)
ATGTCCAAGGTCCGAGGGCTCCGATCCGAGATCATTGGGGCCAGACTCGA
AAAGAAGAGGGCAGCGCTCGAGGGCCGGACCCTCCGGAAGGGGAAGGTTG
CCACCTTCATGGGCTTCATGCCCTTCGGGAAGCACGGCTTCCTTAGGAGA
AGGGCGAGGGAGCACGCTGAAGCTCACATGGGCGAGGCGACGCTCTCCAT
CACCAAGAAGGGTGACTTG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8865:2763..2981-

>mRNA_E_fasciculatus_S2_contig8865.16963.1 ID=mRNA_E_fasciculatus_S2_contig8865.16963.1|Name=mRNA_E_fasciculatus_S2_contig8865.16963.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8865:2763..2981- (Ectocarpus fasciculatus EfasUO2)
ATGTCCAAGGTCCGAGGGCTCCGATCCGAGATCATTGGGGCCAGACTCGA
AAAGAAGAGGGCAGCGCTCGAGGGCCGGACCCTCCGGAAGGGGAAGGTTG
CCACCTTCATGGGCTTCATGCCCTTCGGGAAGCACGGCTTCCTTAGGAGA
AGGGCGAGGGAGCACGCTGAAGCTCACATGGGCGAGGCGACGCTCTCCAT
CACCAAGAAGGGTGACTTG