mRNA_E_fasciculatus_S2_contig8864.16962.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8864.16962.1
Unique NamemRNA_E_fasciculatus_S2_contig8864.16962.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8864.16962.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.150e-21
Identity = 87/120 (72.50%), Postives = 92/120 (76.67%), Query Frame = 2 
Query:   11 MINVSSRRCQQAGCLRHPNFGFPGDRRASYCSGHRETGMXXXXXXXXXXXXXXXXXXXXXDGLRPVCXXXXXXXXXXXXXXXXXXXXXXXX-HPSFGYAS-DKKARRCARHRLEGMEGVK 364
            MINVSSRRCQ  GCLRHPNFGF GDRRA++C  H+ TGM XXXXXXXXXXXXXXXX     G R + XXXXXXXXXXXXXXXXXX       HPSFG+   D KARRCA HRLEGME VK
Sbjct:    1 MINVSSRRCQATGCLRHPNFGFQGDRRATFCCRHKATGMIXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVK 120
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8864.16962.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.110e-9
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 2 
Query:  191 DGLRPVCXXXXXXXXXXXXXXXXXXXXXXXXHPSFGYASDKKARRCARHRLEGMEGVK 364
            DGLRPVCXXXXXXXXXXXXXXXXXXXXXXXXHPSFGYASDKKARRCARHRLE MEGVK
Sbjct:  594 DGLRPVCXXXXXXXXXXXXXXXXXXXXXXXXHPSFGYASDKKARRCARHRLENMEGVK 651
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8864.16962.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
EsV-1-77.150e-2172.50n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-71.110e-998.28n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8864contigE_fasciculatus_S2_contig8864:2737..4938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score65.9
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D8LJI6
Model size366
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size354
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842541.0962224-CDS-E_fasciculatus_S2_contig8864:2736..28291696842541.0962224-CDS-E_fasciculatus_S2_contig8864:2736..2829Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8864 2737..2829 -
1696842541.110667-CDS-E_fasciculatus_S2_contig8864:3160..33261696842541.110667-CDS-E_fasciculatus_S2_contig8864:3160..3326Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8864 3161..3326 -
1696842541.1278598-CDS-E_fasciculatus_S2_contig8864:4833..49281696842541.1278598-CDS-E_fasciculatus_S2_contig8864:4833..4928Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8864 4834..4928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842541.1449423-UTR-E_fasciculatus_S2_contig8864:4928..49381696842541.1449423-UTR-E_fasciculatus_S2_contig8864:4928..4938Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8864 4929..4938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8864.16962.1prot_E_fasciculatus_S2_contig8864.16962.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8864 2737..4928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8864.16962.1

>prot_E_fasciculatus_S2_contig8864.16962.1 ID=prot_E_fasciculatus_S2_contig8864.16962.1|Name=mRNA_E_fasciculatus_S2_contig8864.16962.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
MINVSSRRCQQAGCLRHPNFGFPGDRRASYCSGHRETGMVDIVSRRCREP
SCGRRPLYNFDGLRPVCCSQHKSPGMIDVVSTRCQEPGCFCHPSFGYASD
KKARRCARHRLEGMEGVK
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mRNA from alignment at E_fasciculatus_S2_contig8864:2737..4938-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8864.16962.1 ID=mRNA_E_fasciculatus_S2_contig8864.16962.1|Name=mRNA_E_fasciculatus_S2_contig8864.16962.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2202bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8864:2737..4938- (Ectocarpus fasciculatus EfasUO2)
GCTCCCCGCCATGATCAACGTGTCCAGCCGCCGCTGCCAGCAGGCCGGGT
GCCTCCGTCACCCCAACTTCGGCTTCCCGGGGGACAGACGCGCTTCGTAT
TGCAGGTGTGTGTGTCGTGGACGCTTTTTGTGCGTGTGTGTGTGTGTCTT
TTTTGCGCTTCTTGTGGTGCGCTGCTGTATGGTGCGAGTTGAAACGAATG
TGTTCAGCACGGGCGAAATGTCTGGGTTTTTTTCGCTTGTTGCAGTGTGT
GTGCAGCAGCAAAAAGGGGATGATGTCTGCGGAAGACGAAAAATGAAAGG
TTCGACGCGGCTGAGCGTTTTCGGTCGCGCTCGTATCATAGCACAACCGA
AAAGATTTTCACCCGAAGGGACTGACTCGGTAAAGAAACAAGTACAGTAG
CCTTACTCCGTAAATTTTAATGTGCATGTGGTATGCATACGCATCGGAAC
ACAACAAAACAGAATTTAAACCCGAATCCGACGGTGCTTCAAAACGTAAG
TTTTTAATAGCGTTTTAATAGTAGTGTTGACTGCGTAAACTAGTACGCAT
GTGGTAGATAGGCAAGCTGGCGGCCTTCCAGATCGCCAACAGTTTGACAA
CAGCGTATGTAGTATGCATAGCAGCATCGGCACAAACCTGGTCCATAGCG
CCTTTTCACATTGAGTCAGGTACCTTTTTTCTTGTGTGTGGCCATTCTCT
CGTCGGAAGGTGAAATGAGTTGACAGTTGACAGGTTGTTACAAGGCCGCG
CTTGCGGCGAACGACGTACCCAACTGATGATGTTGTCGCACCCTGTTCCC
TTTTCCCTGCCGTAAGGTGTATGCTCTTAGTATTGCCTCCGGCCTCTCTT
TGTGCTTTGTGCCTTTCTTCTTTCCTTTCTTTCTTGTTCTCCAAGCCCTC
TCTGCGATGATCTTGGACGATACCTCGAGCTCCTTGTTATTTTTGTTTTT
CCTTTGCTGGCTGTCTGCCGCCTCTGCTGCCTCTTTGGTGCGGTGCCTAT
GCTACACTAATGCGCTGGTGCATACTGCACTGCTGTAGTATTATATAGTA
CTTGGTACTGGTGTACGTTGTCCTTCGATTTTTTTATTTTGTGGGAATAT
ACATGTGTTTGTTTTTCGCCCCCCGTCTAGCTGCACCCCCTGGGGTGGGG
TGTGGTGCAGGGCGGGGGATGCCTGGTCGGCGGGAACCCGGCACGGAACC
CTCCGGCGTTGTAGGCGGGTGTGGGAAGCGTTCTCCTTTATTTTATTTCT
TTTTAATCGGTCCCCTCGACGCTCTTTCTCGTTTGGTGCGGTAGCTGGTC
TTTCTTTCTTCATTTTGTATTCTCTTCCGAGTGGTTTTTGTATGTACCTT
ATTTCATTTTCTGTTTCTTCGTGGGATTTTGAGACCACGGGCCCCCCATC
TTTCTTTTTTTTTAGCTACTGTGAGAAATAACCACAACAACAATAGCAAA
AAGTAGAAAAGCGTGCCGATTTGTCGCGCCCACGAGAAAACTACGTAGAA
AAGCTTCCAGTACAGTACGACACACTCGTCTTCATACACTAACTTATGCT
GTTATGTCGATCCTCTGCGTCGCATTTTGCTTTTTCCCACTTGCTCTCCA
CGCGCCGCACAGCGGCCACCGTGAGACGGGCATGGTGGACATCGTGTCGA
GGCGGTGCCGAGAGCCATCGTGCGGGAGACGCCCCCTGTACAACTTCGAC
GGCCTCCGCCCGGTCTGCTGCAGCCAGCACAAGTCGCCCGGCATGATCGA
CGTGGTCAGCACCCGCTGCCAGGAGCCGGTGAGCTGGCGCAACGCGAAAC
CCGTTTTTTGGAAACCCCACTACTGCTGTAGCTTCCTTTCCAACGCCATT
CTAGCTCCCTTCCTTTCCAAGCCAAGTTTTGGCGTCCCTTTCAACCCCTT
TTAGGTTGCTGTTCAACACCTGCCTTTTCCTCCAACCCTCCTTTAGGTTC
TCAACCCCTTTTTTCGTTCACTCAGACCAACACCGCATTCCAACCCGCCA
CCTTAGGTCCACCGCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCC
CTCCCGCAGGGATGCTTCTGTCACCCGTCCTTCGGCTACGCCTCGGACAA
GAAGGCCCGCCGCTGCGCCAGGCACCGCCTGGAGGGTATGGAGGGGGTCA
AG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8864:2737..4938-

>mRNA_E_fasciculatus_S2_contig8864.16962.1 ID=mRNA_E_fasciculatus_S2_contig8864.16962.1|Name=mRNA_E_fasciculatus_S2_contig8864.16962.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8864:2737..4938- (Ectocarpus fasciculatus EfasUO2)
ATGATCAACGTGTCCAGCCGCCGCTGCCAGCAGGCCGGGTGCCTCCGTCA
CCCCAACTTCGGCTTCCCGGGGGACAGACGCGCTTCGTATTGCAGCGGCC
ACCGTGAGACGGGCATGGTGGACATCGTGTCGAGGCGGTGCCGAGAGCCA
TCGTGCGGGAGACGCCCCCTGTACAACTTCGACGGCCTCCGCCCGGTCTG
CTGCAGCCAGCACAAGTCGCCCGGCATGATCGACGTGGTCAGCACCCGCT
GCCAGGAGCCGGGATGCTTCTGTCACCCGTCCTTCGGCTACGCCTCGGAC
AAGAAGGCCCGCCGCTGCGCCAGGCACCGCCTGGAGGGTATGGAGGGGGT
CAAG
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