mRNA_E_fasciculatus_S2_contig8860.16959.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8860.16959.1
Unique NamemRNA_E_fasciculatus_S2_contig8860.16959.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8860.16959.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR25_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.690e-45
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = 1 
Query:    1 MSGDDAVWRTFQISGNYTRCTVCKQRFSHKERVQANPPTAEQPGWKNKRCHPNCEQAAKSRVRSKERVPPEPVVMDNQFDTVRCCLCHNRIARGARMKADKHDVDEEAGQQAWFNKQHHPRC 366
            MSG  AVWR F+++G++TRCTVC+QRFS +ERVQANPPT EQPGWKN RC+P C QAAKSRV SK +VPP P++  NQF T RCCLC+NRIA GARMKA K           W +K+HHP C
Sbjct:    1 MSGGHAVWRPFKVNGDFTRCTVCRQRFSDEERVQANPPTPEQPGWKNIRCYPGCAQAAKSRVPSKGKVPPRPIIFGNQFATTRCCLCNNRIAVGARMKATKIG-------HTWHDKKHHPSC 115
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8860.16959.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR24_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.520e-6
Identity = 42/60 (70.00%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:  455 TTNLRPPTLESGAALETTREEPRSAASPRRNAEEETMTHAGTQGPRAARAHVRRRSELER 634
            TT L P TLES  ALE  R    S ASPRRNAEEE  THAGTQGP AARAHV+R SE ER
Sbjct:   27 TTTLLPQTLESSPALEDARG---SEASPRRNAEEEP-THAGTQGPGAARAHVQR-SERER 81
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8860.16959.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.690e-4563.93protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.520e-670.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8860contigE_fasciculatus_S2_contig8860:480..5045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2083
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003780.2
Cds size885
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.8728926-CDS-E_fasciculatus_S2_contig8860:479..9071696842540.8728926-CDS-E_fasciculatus_S2_contig8860:479..907Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8860 480..907 +
1696842540.8865464-CDS-E_fasciculatus_S2_contig8860:1686..17121696842540.8865464-CDS-E_fasciculatus_S2_contig8860:1686..1712Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8860 1687..1712 +
1696842540.8961403-CDS-E_fasciculatus_S2_contig8860:3277..37081696842540.8961403-CDS-E_fasciculatus_S2_contig8860:3277..3708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8860 3278..3708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.9055479-UTR-E_fasciculatus_S2_contig8860:3708..44221696842540.9055479-UTR-E_fasciculatus_S2_contig8860:3708..4422Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8860 3709..4422 +
1696842540.9148512-UTR-E_fasciculatus_S2_contig8860:4561..50451696842540.9148512-UTR-E_fasciculatus_S2_contig8860:4561..5045Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8860 4562..5045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8860.16959.1prot_E_fasciculatus_S2_contig8860.16959.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8860 480..3708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8860.16959.1

>prot_E_fasciculatus_S2_contig8860.16959.1 ID=prot_E_fasciculatus_S2_contig8860.16959.1|Name=mRNA_E_fasciculatus_S2_contig8860.16959.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=295bp
MSGDDAVWRTFQISGNYTRCTVCKQRFSHKERVQANPPTAEQPGWKNKRC
HPNCEQAAKSRVRSKERVPPEPVVMDNQFDTVRCCLCHNRIARGARMKAD
KHDVDEEAGQQAWFNKQHHPRCPEPAVGSSSRRSGGASAIDSVRNNSGGA
EYDEPPSANPRKRRRSGDDSRGTEKRSKSKKKRRGGDDDARRDSGSPRGS
RSRPAPQRTRAAKKGEKKKAGSKAKDDVECVRAPTSTERIDEQISKRQRE
LGVVDVEGDNAAASCRNLAATEGWVVGSSRSKSAPAQKECSRKR*
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mRNA from alignment at E_fasciculatus_S2_contig8860:480..5045+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8860.16959.1 ID=mRNA_E_fasciculatus_S2_contig8860.16959.1|Name=mRNA_E_fasciculatus_S2_contig8860.16959.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4566bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8860:480..5045+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGGCGACGATGCGGTGTGGAGGACATTCCAGATTAGCGGGAACTA
CACGAGATGCACGGTATGTAAGCAACGATTTTCTCACAAGGAGAGGGTGC
AGGCGAACCCGCCTACAGCGGAGCAACCTGGCTGGAAAAACAAACGCTGC
CACCCAAACTGCGAGCAGGCTGCCAAATCCCGCGTTCGGAGCAAGGAAAG
GGTGCCCCCCGAGCCCGTGGTCATGGACAATCAGTTCGACACGGTTCGCT
GCTGCCTGTGCCACAACCGAATTGCGAGGGGTGCCAGGATGAAGGCGGAT
AAACATGATGTGGATGAGGAGGCAGGTCAGCAGGCGTGGTTCAACAAGCA
GCACCACCCTCGCTGCCCGGAGCCTGCTGTCGGCTCTTCTTCTCGTCGTA
GCGGTGGTGCCTCTGCCATCGACTCTGTGTTCTCCGGGGGCGGGTAAGAG
AGCAACGATTAGTGGTCGTTGTCGCACAAAGAAGCAGTATGATTTTACAG
CTGTACATGTAGTCTAGTACTGCTGTAGTTGGTGCGGTAGTGTTGTAGTG
CGTCGATCACAGCCGTGTAGTGCGTCCATCGTGTGCCACAACCGTAGTGG
CATGATTCCTTTGGTGTTGGGGACCCTTGTTTTTCGGCGAAACTGCCGTT
TCAGTCGGCGTTGGATGAGGTTTCCCTCCGCGGTAAATACCATCCTCTGC
ACATATCCGCACAAAACCGAGGTCTACTTTGACCCTTGTCATAGACACCG
AAACAGCCCTATGTATGCCACATGAAAGAAACACCATCAGTTTCTGGTGC
AGGACCATTCCCTCTCGAAAAAACACGAATGAATATCGTCTACTCGGCGT
ATTGTACGCCAGGAAATTTCTTCCGTGATCGATCGCAGACCTTCAAAACG
ACACAGCGAGCGCTACATGGTATTTTTTTCCCGACAGTCTAATGTAGTAT
GCGGGCGCCCTGTTGAGAGCAGATGATGACCTACTACTGCTGTTCATTGT
GCTTCTTGTATCAGAAAGTTTATCCTCACCATACAGAACTCTTTTCGCAC
CAAAAAACTATTAATATTAAATTATTGTGAACACCTGTAGCCTGTAGGTT
CTCTCTCTTGCCGCCAGCCTGGACGTATATATTGTACAGCAGTACCGTGG
GTGGCACAAGATACCACACACACCCGGACCGAGTTTCAAAACTCGGTTAC
TCCAAAGCAGAAATAACAGCGGCGGGGCCGAATGTGGCGGCGTTGAAACC
GCCTCGCCGAGAGCTTTCCGAAAACGCGTCAATGTGATTTGTACGTCCTC
TTCATCGTGAAGCAATCGAGCTTGAAAAATCTATCCAGGGGGGTTGGTAT
CCTGTGCCACTCATGTTATATGCTCCTGCTGTCGGCCTGAGAAGCGTGGC
GTGTATCTTTGCAGAATGTAGTTCATGTTGTTGTGCCCGGAGGCTTTAAA
CCGTGTGCAAAATCCATCCGGGCGCTGCTTGCATGCACAGGATCTTCGAC
CTCGATTGGGACGACTTGTCTTGCGACGACGAGTTCGCGGGCGAGCTTGA
AGAGTTGGCGATGATGGAGCCGTCATGCACGGTCTGCGGCGAGGCCATGG
ACATGGATCAATACGAGCCCGACTGGAACTCACCCCTCGGCCCGGTTTGC
GAGGAATGCGAACCAGAGGTTTCAGGTAAGAAGAGATTTCGCCGCAGGCA
ATAAATACTCTACAACCAGGTCACACCACCCCCCGACTGGTGGCTGTCGG
CTTCGTCGAGCGCACGCTACTACACTGTTTTGTAAATCTGAGAGTTTTTT
ATATTTCAACACAAAAATATCGACAGCAAGTAAATTGCATGTTTTTCCCG
GCGTGCAGCAAAGCCGACTTTGATCTTTTATTTGTCGACTTTGATATTTG
GAGCTTCGTTCTGTACACGGCCTCAAGGGGCTGTTTTGTACGTTTCCAAC
ACTTGTCGAAACAGCTGCCGACCGTTGGGCGGTGGCGTTATTTTCCCATC
CCGTAGCTTACGGCAGTTTCTTCTCGGGAACTTCTACGGTACTACTGCTG
TGCTTCCATCTTGACATACATACATGTGTCCCGGTGGAGTCACTGACAAA
CATCGGCGACGCCCTCTCTCCATCCTCATTTTGTTTTTCGGGGCAGGCGT
TGAGAAAGAGTATGATGGAGATTATGGAGATGAACAAGGTGAGATGGGTG
ATCAAAAACAAATCGATTGTCCGTGTGGGTTTCGCTGAAAGTTTGTTATC
TTTGGCTTTTGCGCGAGCAGGCTGCCACTTTGTAAGAACCTCTTGGGGGG
TTCCGGAGAACGTGCTTGTTTTTTCAAACCGCCGGATCCATCCTCGGTAC
GGGATTTCGCGTATCTTGCAGCGAATTGCTGTCATGCACCAAAGCTAGCA
ACCGCAGGGGTGATGACAATCAGCGCACCTTGGTGGCGTCATTGACTAAC
AACGGCGACGTCTCTGAAATCCTCATTTTGGGGGGGGGTTCAGGCGATGA
GGAGGATGATGACGACGACGATGGAGATGGACAAGGTAAGATAGATGTGT
CAGGGTGAAAACACCAAAAACATCGTTCCGTAAGGGTTTTTGTCCGAGAG
TCTGTTCTCTTTGGGTTTTACGCCAACAGGCCTGCGAAAATTAGTGACTG
TGCTGCCTTTTACTGGCACATCTACGTAGCAACTGCTTTTCTTCATTCAA
AGGGTGGCACCCACGGTACGGGATTACGCATGGCATGTCTTGCAGCGAGT
TGAGGTAGAAAATCTAACCCTCCGCGTCACATCTTCCGCCGCCCGCAGAC
GACGAACCTCCGTCCGCCAACCCTCGAAAGCGGCGCCGCTCTGGAGACGA
CTCGCGAGGAACCGAGAAGCGCAGCAAGTCCAAGAAGAAACGCAGAGGAG
GAGACGATGACGCACGCCGGGACTCAGGGTCCCCGCGCGGCTCGCGCTCA
CGTCCGGCGCCGCAGCGAACTAGAGCGGCGAAGAAGGGCGAGAAGAAGAA
GGCGGGTAGTAAAGCCAAGGATGATGTCGAGTGCGTCCGGGCGCCGACCT
CGACGGAACGGATCGACGAACAGATCTCGAAGCGGCAGCGGGAGCTCGGC
GTCGTCGACGTGGAGGGCGACAACGCCGCGGCCTCTTGTCGCAACCTGGC
CGCCACCGAGGGGTGGGTGGTCGGCTCTTCCCGCTCCAAGTCCGCGCCGG
CCCAAAAGGAGTGTTCGAGAAAGAGGTAGACACATGCTGGCACAGCAGCA
GCAGTGTTGTCTGCCGGACGGTGAGGGAGGGGGCCGCGCCCAGAGAGTGT
GGCTTGAATCGTGCCACAGGGCACTCCAGCGCTTGAGAACCTGGTGACCA
GGAACTGGAGGGTTCAATATTTTTCGAGTGTAGAATTTATCTCCACGCCT
CACGTAAAGCCGGGTCTGGTGTGTTTAGTCCCGTTTAGTTTACCGACAGA
GGCAACAACGAGGAGCGAGCCTCGGCAGGTGAGAGGTTCTCATCAAAGTG
GTGGTGGTGTATCTATAGTGGTGGACATTGCTTATTTAGTGATATGGGGG
GCAAAGGCTTGAGAGGTTTTTTTTCGTGACAGTGGACAACTACTGCCAAG
TTTGTTTGTGTTGTCCGGAACTGAGTCGTGTTTTTACTGCGCGCAGACAG
AACGCTCAAAGAAGTAGTAGGTGTTGGCGAGAACCGCCTTCGTCGACCTC
GCGGAGCGAGTATATATATAGAGTCTCCTTGAACTTGCTCAAGTTGCATG
AGGGAATTACAATTCATATTTTCGAATTCGGACGTGATGATTATTGCGAA
GTTCGGTGGGAAAACACGTGGAGTACGTAGCTTAGGCGGGGGGTGATTTA
GACCAACAACGGACGGCGAAGGTTCAGATTTGGGGATGTCATACTTAACT
AGTTGTTATGTCGCCACAGCTAGCTAGTCCGTTTGATGTCGTAGTCCAGA
CGGTAGGTGCGAAGTTGTACAAATCAAACTAAGGTAGGTGAGGAACAAAG
GTACCCGTCCTTTGGCTTGATTTTATTGAAGTATATCTTGAAGGAAATAT
GTATGTATGTATGTATGTATGTATGTATGTAGTCTATGTATGTATGTATA
TATGTATGTATGGATCGATGCGGGTAGTTCACAACAAGTCGTCGTACTAA
TACAAGGTACTTCGATCTGATGGTCCATTTTATGTCGTAGTGGGCTCATG
TTGACCCGTGAGTAACACAGGCTTAGGTATTTACGATTGGGCGTGGTGCT
ACCGCTACGGTAGTAGTAGCTGGTACATTATGTGTGGGGGAAGGGGCGTT
ATTGTCAAGGAGGACCCGATTCCTACCGACGACGCGATATATGCGAAGAA
AAGGTGTACGACCTGCTGCTGTACACCCTCGCAAGAGGACCCGATTCCAC
GTTGGTTCGATCGAGGTACATTTAATTATTCGTGTTCTCCGACGCGTGTA
TTTTCTAACAACAACGGATGAGATAGCAGCGTGGTGTGGTAAATGGTTTG
CCGGCGCGACAACCTCTTGCCGCTTAAGACCAGATTGACACGTTGTTAAC
AGCCCGAAACGGTCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8860:480..5045+

>mRNA_E_fasciculatus_S2_contig8860.16959.1 ID=mRNA_E_fasciculatus_S2_contig8860.16959.1|Name=mRNA_E_fasciculatus_S2_contig8860.16959.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=885bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8860:480..5045+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGGCGACGATGCGGTGTGGAGGACATTCCAGATTAGCGGGAACTA
CACGAGATGCACGGTATGTAAGCAACGATTTTCTCACAAGGAGAGGGTGC
AGGCGAACCCGCCTACAGCGGAGCAACCTGGCTGGAAAAACAAACGCTGC
CACCCAAACTGCGAGCAGGCTGCCAAATCCCGCGTTCGGAGCAAGGAAAG
GGTGCCCCCCGAGCCCGTGGTCATGGACAATCAGTTCGACACGGTTCGCT
GCTGCCTGTGCCACAACCGAATTGCGAGGGGTGCCAGGATGAAGGCGGAT
AAACATGATGTGGATGAGGAGGCAGGTCAGCAGGCGTGGTTCAACAAGCA
GCACCACCCTCGCTGCCCGGAGCCTGCTGTCGGCTCTTCTTCTCGTCGTA
GCGGTGGTGCCTCTGCCATCGACTCTGTCAGAAATAACAGCGGCGGGGCC
GAATACGACGAACCTCCGTCCGCCAACCCTCGAAAGCGGCGCCGCTCTGG
AGACGACTCGCGAGGAACCGAGAAGCGCAGCAAGTCCAAGAAGAAACGCA
GAGGAGGAGACGATGACGCACGCCGGGACTCAGGGTCCCCGCGCGGCTCG
CGCTCACGTCCGGCGCCGCAGCGAACTAGAGCGGCGAAGAAGGGCGAGAA
GAAGAAGGCGGGTAGTAAAGCCAAGGATGATGTCGAGTGCGTCCGGGCGC
CGACCTCGACGGAACGGATCGACGAACAGATCTCGAAGCGGCAGCGGGAG
CTCGGCGTCGTCGACGTGGAGGGCGACAACGCCGCGGCCTCTTGTCGCAA
CCTGGCCGCCACCGAGGGGTGGGTGGTCGGCTCTTCCCGCTCCAAGTCCG
CGCCGGCCCAAAAGGAGTGTTCGAGAAAGAGGTAG
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