mRNA_E_fasciculatus_S2_contig886.16958.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig886.16958.1
Unique NamemRNA_E_fasciculatus_S2_contig886.16958.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig886.16958.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 3.000e-110
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 1 
Query:    4 AHLAVVASWKAGVGYLLGSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAMAWGGWMAGQHPHKLGWGVIMAVIGGIIGNWFSALNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISG 495
            AHLAVVAS +AGVGYLL SILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAMAWG WMAGQHPHKLGWG+IMAV+GGIIGNWFS LNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISG
Sbjct:   90 AHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAMAWGSWMAGQHPHKLGWGIIMAVMGGIIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISG 253
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig886.16958.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.000e-11095.73protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig886contigE_fasciculatus_S2_contig886:22338..25219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size512
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006830.2
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.798887-CDS-E_fasciculatus_S2_contig886:22337..224501696842540.798887-CDS-E_fasciculatus_S2_contig886:22337..22450Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig886 22338..22450 +
1696842540.8103695-CDS-E_fasciculatus_S2_contig886:23173..233431696842540.8103695-CDS-E_fasciculatus_S2_contig886:23173..23343Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig886 23174..23343 +
1696842540.8210642-CDS-E_fasciculatus_S2_contig886:24240..242981696842540.8210642-CDS-E_fasciculatus_S2_contig886:24240..24298Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig886 24241..24298 +
1696842540.8312862-CDS-E_fasciculatus_S2_contig886:25050..252191696842540.8312862-CDS-E_fasciculatus_S2_contig886:25050..25219Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig886 25051..25219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig886.16958.1prot_E_fasciculatus_S2_contig886.16958.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig886 22338..25219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig886.16958.1

>prot_E_fasciculatus_S2_contig886.16958.1 ID=prot_E_fasciculatus_S2_contig886.16958.1|Name=mRNA_E_fasciculatus_S2_contig886.16958.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
AAHLAVVASWKAGVGYLLGSILLGWGVYLQAHRWGRRWRVSRKAVDWAKR
GPLWMCKGAEKTALVAAVAAMAWGGWMAGQHPHKLGWGVIMAVIGGIIGN
WFSALNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESA
FFVALVAQGFGTISGEMERV
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mRNA from alignment at E_fasciculatus_S2_contig886:22338..25219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig886.16958.1 ID=mRNA_E_fasciculatus_S2_contig886.16958.1|Name=mRNA_E_fasciculatus_S2_contig886.16958.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig886:22338..25219+ (Ectocarpus fasciculatus EfasUO2)
GCGGCCCATCTTGCTGTCGTTGCATCCTGGAAGGCTGGAGTGGGGTACCT
GTTGGGATCCATTCTACTGGGCTGGGGGGTTTATTTGCAGGCCCACCGGT
GGGGTAGGCGATGGTGAGTTTATTTGTTGTTGCTGTCGTCGTCATATCGT
CGTCGCAGGAGGTGCAGTAGTCGTCCTCCCAATATGTCGGGAGAACGCAA
GCGCGAACGAGCATCGCTTTTTGCGTACAAAGGCGCGAGGTATTCAGCTC
AACCATCCTCTTTCAAGAAAATCTTCCAAGTTTGTCGACTATCGTCAACC
GTGGTTATGATAAATGGTCCCATTCTTTATCCGGTACCGCTCACGCGCTC
ACGCAAACTGACACCCTGCCCGCTACGTGACGGCCGTGGTATTGCTGCGT
GCACATGGCGTATGGCACGTGCGTCGTTGGCTACACCATCAGAAAGAACC
CCATACGACCACGGTTACCGTGCATCGGAATAATGGCCAGATCGGGGGCT
TCGCCATGTTCCACCCCGAGAGGGGGAGCGGTGGCAGAGAGAGAATGGAA
ACGACGTGAAGCAGAATCCCATATACAAGTATATCATACAGGAAGTCACC
GGCGGTAACAACAAGAACCGACTTTGTTCAACCGCATGACGTCGCCCGTC
TATTTAACGTACACTTGCCCTCCAACTTAAAGTAGCGTAGAACATCCGCT
GAGCCTTGGCAGCTGTTTTTAGGCTTTCACGAAGCGATATATGCATAAAC
AGCCGTGCGTCTCCCGAAACGAAGGCGGAAATTGATCGAGTGCTGTCTTC
TTCTCACAACCAACCCCTTCCGAAATGACGAAAAAGGAGGGTTTCCCGCA
AAGCGGTCGACTGGGCGAAGAGAGGCCCGCTGTGGATGTGCAAGGGGGCG
GAGAAGACGGCGCTGGTGGCGGCGGTGGCGGCCATGGCGTGGGGCGGCTG
GATGGCAGGCCAGCACCCACACAAGCTCGGCTGGGGGGTCATCATGGCCG
TCATAGGTGAGCGCGCGAAGAAAAAACACGCGCGGGTGCCACAGATTCAT
GTTTTTTATCAAGAGGAAAAAACGCCTTTTTCTTGTTCTTGTCGCGGTAA
GGGATCCTCGTATCACCGCTACCTGCCGCTTTCCCGGTGCATCCTTTGGT
GCTGTCTTCCTCAACTGAAGAGTCCCAATCCGGGGCCATGTGAACTTAGT
TCTGCGACTCATGCCTCCATCTTCTAACGAGATACAGGCTTTCCTTCTGT
GGACTCCGAATCGCCAGTCATGCAGTCATTGATCACGAAACTGGTGTGGT
ATTCATCAGTGTTGCCGATATATTTTGTAGCAGTTTCTCTGTCAAAGCCC
TGTTGATCATGAACGGTAGCCGCCATCAGCCGAACGGTTCTGGCGTAGTG
CCGCCAGTTGATATCTCATCCAAGTTGGGAGGTTTCATGCAGTCATTGAT
GTGGAACGGAAGGCTACCGCACAGCTTTGGGCACATGCAGCGTGTGCTCC
GACTGACAAATGTGGCAACTTCATACCAATTGTGTGCTGCGTGTTGGTTA
AGGTTTTATGTTTTTCAAGATCGTTTCCAGTCCTTCTGCATATACTGAAG
GAAATCGAACGATTTTAGATTCGATCGCCAAAACAGCTGTTGGGTCTCGA
CATTTTTCATTCCTCAAAACGAGGTGGCGCAAACGTTCCATCGGGACCCC
CGAGTTGTTGAGGAGGTGAAAAACACGGGTGTAATGCCGGACATCCCCTG
CCTAAGATCAAGGAAGATGGGGCGCGAATTCTCCCACATCGCCCTCCAGG
TAGATTTTCGCCTGACGGAAAAAGCGATGTCGATTGCCAACTGGTCTGCT
TCCCTGTCTGCGTTCCGCCTCTCCGCTGTGTCACTGCCTTCGTCTTTCTC
AAGGTGGAATAATCGGCAACTGGTTCTCGGCCTTAAACGGAGGGGCCGAA
GGACGAATTGTGTGAGTGAGACAACCCGTTCGCAGACACATACACACCAA
TTCGATTCGATTTTCAGGGCGAACCTCACAACGATGGCTTCGCACGGGTC
GCTCTTCTTTTGGCACCTCAACGCCACCACAACACAGCTCGGGCGTGGTA
CGGAATGCTGTCAATTTTCGAAGGGTAGGCTCTCCATCGGATGTTGACCA
ACTCGCGCACGGTCGTGAAGTGGGCCAAGAAAGAAGCCACTCTTGACGAG
GGAGACGGCACCCACCCTTTCGCCCTCCTCCCTTCTCATGCACATGCACG
CGCGAGAGAAAGAGCGGGTGTCTCTCAAGGGTTGTGGCGTGCTACAATCG
CAATCGCGTGCCCAACGATGCGCTGGGTGTGCAAAACCATCATCGAAAAT
AGACGGGCGATGAGACGGTAGTGCTACCCGTACGTTGTTTCGTTTTCATA
GTCGCTGCTGCGGATGTGGTGTGAGCGCTTTAGGCTGCGCCTTGGCGCCC
GGCAATATTCGTTATCCGCAACTGGAGCAGCCCTCGGAAAACGAAACCGA
ACACAGAGCAGTGTTTTAGTGCTCTTCTCAGGGGTCCAATGTTCCGCGAC
CACGGCTTGGATGTTCCTTTTCTTAGACAAGTGATGTGATCAAGAAAGCG
ACGGCAATGTTGACCATCCGGGTAGACCTGCTCCAGCGAGCTTATGCAGG
CCATTGCCGTCAACAGCAACACGCGTTCACACACAACACACCACACGTGT
ACGTATCATGCAGCTGGGGAGACTGGCGGTGCAACGCTCTGTCATTCGCC
GGGGTGATCACCGCCGGTCGGTACGCCGCGAGCCTGGAGCCGGAGGAACG
AGAGGCGACGTTAGAGAGCGCGTTCTTCGTTGCTCTGGTCGCCCAAGGCT
TCGGGACAATTTCGGGTGAGATGGAGAGAGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig886:22338..25219+

>mRNA_E_fasciculatus_S2_contig886.16958.1 ID=mRNA_E_fasciculatus_S2_contig886.16958.1|Name=mRNA_E_fasciculatus_S2_contig886.16958.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig886:22338..25219+ (Ectocarpus fasciculatus EfasUO2)
GCGGCCCATCTTGCTGTCGTTGCATCCTGGAAGGCTGGAGTGGGGTACCT
GTTGGGATCCATTCTACTGGGCTGGGGGGTTTATTTGCAGGCCCACCGGT
GGGGTAGGCGATGGAGGGTTTCCCGCAAAGCGGTCGACTGGGCGAAGAGA
GGCCCGCTGTGGATGTGCAAGGGGGCGGAGAAGACGGCGCTGGTGGCGGC
GGTGGCGGCCATGGCGTGGGGCGGCTGGATGGCAGGCCAGCACCCACACA
AGCTCGGCTGGGGGGTCATCATGGCCGTCATAGGTGGAATAATCGGCAAC
TGGTTCTCGGCCTTAAACGGAGGGGCCGAAGGACGAATTGTCTGGGGAGA
CTGGCGGTGCAACGCTCTGTCATTCGCCGGGGTGATCACCGCCGGTCGGT
ACGCCGCGAGCCTGGAGCCGGAGGAACGAGAGGCGACGTTAGAGAGCGCG
TTCTTCGTTGCTCTGGTCGCCCAAGGCTTCGGGACAATTTCGGGTGAGAT
GGAGAGAGTG
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