mRNA_E_fasciculatus_S2_contig8854.16952.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8854.16952.1
Unique NamemRNA_E_fasciculatus_S2_contig8854.16952.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.030e-91
Identity = 139/197 (70.56%), Postives = 156/197 (79.19%), Query Frame = 3
Query:   27 PKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSDRSFQKFFATSTFSKWANEESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTE--EWVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAK 611
            P YKFCV+REAV+GLTGPKL RML+++M  LY AH DK FDVI TVCDGA  +  RSFQK+ A   FS+WA  +S  E R  DFKVAF+HP HG PVFNMSDPVHLLKKVVNALWHS +  KQRDLK LW++   E  EWVSFSLKTLE+VW +EEAGGG+RS AEQAAHL RF K +PEMF RNSHNCMSV LSAK
Sbjct:   67 PTYKFCVFREAVRGLTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEH--RSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGGGVRSVAEQAAHLIRFLKFDPEMFTRNSHNCMSVGLSAK 261          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.450e-85
Identity = 123/127 (96.85%), Postives = 124/127 (97.64%), Query Frame = 3
Query:  261 MRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEE--WVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAKVGECATRV 635
            MRHKDFKVAFRHPQHGRPVFNMS+PVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEE  WVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMF RNSHNCMSVKLSAKVGECATRV
Sbjct:    1 MRHKDFKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEEEEWVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFYRNSHNCMSVKLSAKVGECATRV 127          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.640e-76
Identity = 126/197 (63.96%), Postives = 153/197 (77.66%), Query Frame = 3
Query:   27 PKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSDRSFQKFFATSTFSKWANEESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTE--EWVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAK 611
            PKYKFCVYREAV+GL+GPK+ RML+E+  +LY AHEDK+FDVI TVCDGA  +  RSFQ+ FAT+TFS+WA  +S  E RHKD+ VAF+HP H  PVFNMSDPVHLLKKVVNALW+SGL  K+R L+ LWW+P T+  E  SFSLKTLE+ W +EE     R+ AE+AA L RF K++    +R+SH CMSVKLSAK
Sbjct:  453 PKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEH--RSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGLDSKERHLQNLWWNPLTDAPELASFSLKTLEKAWREEEGHRANRTAAERAATLRRFLKMDAACLDRDSHTCMSVKLSAK 647          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 7.830e-76
Identity = 132/204 (64.71%), Postives = 150/204 (73.53%), Query Frame = 3
Query:   27 PKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSDRSFQKFFATSTFSKWANEESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEE--WVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAKVGECATR 632
            PKYKFCVYREAV+GL+GPK+ RML+E+MLRLY AH DK+ DVI TVCDGA     RSFQ   ATSTF +WA+ +S  E R  DF +AF HP HG PVFNMS P HLL  VVNALW+S L  KQR LK L+W+  TEE  WVSFSLKTLE VW  EE GGG  S AE A++L RF K  PEM +RNSHNCMSV+LSAK   C +R
Sbjct:  238 PKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGA--GEHRSFQTKLATSTFGEWADPKSRLEERFADFPMAFNHPHHGEPVFNMSGPPHLLX-VVNALWYSSLPSKQRHLKNLFWNRDTEEFEWVSFSLKTLETVWVNEERGGGSLSAAEVASNLRRFLKFEPEMLDRNSHNCMSVRLSAK---CVSR 435          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.210e-41
Identity = 94/199 (47.24%), Postives = 118/199 (59.30%), Query Frame = 3
Query:   24 KPKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSDRSFQKFFATSTFSKWANEESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEE--WVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAKV 614
            KP+YKF V+REAV+ L+   ++RML  VM  L  AH DK FDV+ T+CDGA  +  RSFQ   A   F  W     P E     FKV F HP H   VFNMSDP+H+LKK+VNALWHS +  KQR L G+W     +E  +  FSLKT + V+N  E      +  E+ A L+ F  +    FNR +  CM+VKLSAKV
Sbjct:  695 KPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEH--RSFQTHAAILGFCHWIK--GPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQL-GMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERPATLTIFPGMPVGAFNRTNFTCMNVKLSAKV 888          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 5.780e-41
Identity = 95/199 (47.74%), Postives = 117/199 (58.79%), Query Frame = 3
Query:   24 KPKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSDRSFQKFFATSTFSKWANEESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEE--WVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAKV 614
            KP+YKF V+REAV+ L+   ++RML   M  L  AH DK FDVI T CDGA  +  RSFQ   A   F  W     P E     FKV F HP H   VFNMSDP+H+LKK+VNALWHS +  KQR L G+W     +E  +  FSLKT + V+N  E      +  E+AA L+ F  +    FNR +  CM+VKLSAKV
Sbjct:  604 KPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEH--RSFQTHAAILGFCHWIK--GPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQL-GMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERAATLTIFPGMPVGAFNRTNFTCMNVKLSAKV 797          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.530e-25
Identity = 68/153 (44.44%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  162 VCDGAVPNSDRSFQKFFATSTFSKWANEESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEE--WVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAKV 614
            V     P   RSFQ   A S F +W     P E     FKV   HP H   VFNMSDP+H+LKK+VNALWHS +  KQR L G+W     +E  +  FSLKT + V+N  E      +  E+AA L+ F  +    FNR +  CM+VKLSAKV
Sbjct:  546 VAPSRTPLDSRSFQTHAAISGFCRWIK--GPQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQL-GMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNNSITPEERAATLTIFPGMPVSAFNRTNFTCMNVKLSAKV 695          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.750e-25
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 3
Query:   30 KYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSDRSFQ 203
            KYKFCVYREAVKGLTGPKLKRMLNEVMLRLYT HEDKQFDVICTVCDGA  +  RSFQ
Sbjct:  163 KYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEH--RSFQ 218          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.570e-24
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  276 FKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRDLKGLWWDPK--TEEWVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFNRNSHNCMSVKLSAKV 614
            F VAF HP H  P+FNMSDP H+LKK+ N  WHS    K+R+L  +W   +    + V FSL T E V+NQ E  G   S  E+ A ++ FRKV P  FNRNS NCM+V  SAKV
Sbjct:  368 FPVAFPHPVHLGPIFNMSDPPHILKKIANTCWHSDQDSKKREL-AMWCGDEEGNTDLVRFSLATAERVYNQVENDGNTLSQEEKVASITTFRKVVPSCFNRNSWNCMNVSYSAKV 481          
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.610e-8
Identity = 44/133 (33.08%), Postives = 61/133 (45.86%), Query Frame = 3
Query:   36 KFCVYREAVKGLTGPKLKRMLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSD-----------RSFQKFFATSTFSKWANEESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADKQRD 401
            +FC+Y     G+ G      L EV+   + +H     +       G + ++            RSFQ   AT  FS +A  +   E    +F VA RH  H  P+FN+SDP HL+KK+ N LWHS L    RD
Sbjct:  257 RFCIY---YSGVAGTAAYNALREVLHLPFPSHIRHLREKAVPPGSGVLVDNIQMFFISLAKPVRSFQLRAATVEFSAFA--QGDDEESFSNFPVALRHSVHLGPMFNVSDPPHLVKKIANTLWHSDLTGAIRD 384          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8854.16952.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Uncharacterized1.030e-9170.56protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.450e-8596.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.640e-7663.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.830e-7664.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.210e-4147.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.780e-4147.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.530e-2544.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.750e-2589.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.570e-2450.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.610e-833.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8854contigE_fasciculatus_S2_contig8854:214..1218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size638
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002920.1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.1156914-CDS-E_fasciculatus_S2_contig8854:213..6611696842540.1156914-CDS-E_fasciculatus_S2_contig8854:213..661Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8854 214..661 -
1696842540.128196-CDS-E_fasciculatus_S2_contig8854:1028..11261696842540.128196-CDS-E_fasciculatus_S2_contig8854:1028..1126Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8854 1029..1126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.145034-UTR-E_fasciculatus_S2_contig8854:1126..12181696842540.145034-UTR-E_fasciculatus_S2_contig8854:1126..1218Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8854 1127..1218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8854.16952.1prot_E_fasciculatus_S2_contig8854.16952.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8854 214..1126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8854.16952.1

>prot_E_fasciculatus_S2_contig8854.16952.1 ID=prot_E_fasciculatus_S2_contig8854.16952.1|Name=mRNA_E_fasciculatus_S2_contig8854.16952.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=182bp
MLNEVMLRLYTAHEDKQFDVICTVCDGAVPNSDRSFQKFFATSTFSKWAN
EESPSEMRHKDFKVAFRHPQHGRPVFNMSDPVHLLKKVVNALWHSGLADK
QRDLKGLWWDPKTEEWVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRF
RKVNPEMFNRNSHNCMSVKLSAKVGECATRV*
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mRNA from alignment at E_fasciculatus_S2_contig8854:214..1218-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8854.16952.1 ID=mRNA_E_fasciculatus_S2_contig8854.16952.1|Name=mRNA_E_fasciculatus_S2_contig8854.16952.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1005bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8854:214..1218- (Ectocarpus fasciculatus EfasUO2)
AAGGTGTTCTGGGTTAGCATCGGAAACCGAAGTACAAGTTCTGCGTCTAT CGAGAAGCGGTCAAGGGATTGACCGGGCCCAAACTCAAGCGGATGCTGAA TGAGGTTATGCTCAGGCTGTACACGGCCCACGAGGACAAGCAGTTCGACG TAATCTGTACCGTCTGCGACGGTGCTGTGCCGAACAGTGAGTCGCCAAAG ATCCGTGTTCTGTCGAGAAATTGAACTACCACCAAGGGTCAACCCCCAAA AAATAAAAGGGGCACATAGGCTACCCTCCTCCTCGGGAGGGCCAATGTCG ATTTCGGGCCTCGTTCTCGGAATATGCCACTGCCCCCCTCGGGTTTATAT CCACGGTGCCCCTTGCGCAAATACATTGAAGTTGGACCCACCCCATTGGG CCCAGATTTCGAGTAGGCCTACGTGCCTTGATTTTCTTTCGCGTAGATCT TTGCGGTCACGTAGACATACTGACATATTGACACATCGGCTGCACCCGGC CCGCTATAACCACGTCCGCCATCGCCCCCTACGCCTTATTGTTTTTATTG GGCTTAGCCGGTCGTTCCAGAAGTTCTTCGCAACCTCAACTTTCTCGAAG TGGGCGAACGAGGAATCGCCGTCTGAGATGCGTCACAAGGACTTCAAGGT TGCCTTTAGGCACCCCCAGCATGGCCGGCCGGTGTTCAACATGTCCGACC CCGTGCATCTCCTCAAGAAGGTCGTCAACGCGCTATGGCACAGCGGCCTC GCAGACAAACAGCGTGATCTCAAGGGTCTGTGGTGGGATCCCAAGACGGA GGAGTGGGTGTCGTTTTCTCTCAAGACACTGGAAGAGGTGTGGAACCAGG AGGAGGCGGGTGGCGGGATTCGTTCAGGGGCAGAGCAGGCTGCGCACCTG AGCCGCTTCCGCAAGGTCAACCCGGAAATGTTCAACAGGAACAGCCACAA CTGCATGAGCGTGAAGCTTTCGGCCAAGGTAGGCGAATGTGCGACGCGCG TGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8854:214..1218-

>mRNA_E_fasciculatus_S2_contig8854.16952.1 ID=mRNA_E_fasciculatus_S2_contig8854.16952.1|Name=mRNA_E_fasciculatus_S2_contig8854.16952.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=546bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8854:214..1218- (Ectocarpus fasciculatus EfasUO2)
ATGCTGAATGAGGTTATGCTCAGGCTGTACACGGCCCACGAGGACAAGCA
GTTCGACGTAATCTGTACCGTCTGCGACGGTGCTGTGCCGAACAGTGACC
GGTCGTTCCAGAAGTTCTTCGCAACCTCAACTTTCTCGAAGTGGGCGAAC
GAGGAATCGCCGTCTGAGATGCGTCACAAGGACTTCAAGGTTGCCTTTAG
GCACCCCCAGCATGGCCGGCCGGTGTTCAACATGTCCGACCCCGTGCATC
TCCTCAAGAAGGTCGTCAACGCGCTATGGCACAGCGGCCTCGCAGACAAA
CAGCGTGATCTCAAGGGTCTGTGGTGGGATCCCAAGACGGAGGAGTGGGT
GTCGTTTTCTCTCAAGACACTGGAAGAGGTGTGGAACCAGGAGGAGGCGG
GTGGCGGGATTCGTTCAGGGGCAGAGCAGGCTGCGCACCTGAGCCGCTTC
CGCAAGGTCAACCCGGAAATGTTCAACAGGAACAGCCACAACTGCATGAG
CGTGAAGCTTTCGGCCAAGGTAGGCGAATGTGCGACGCGCGTGTGA
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