mRNA_E_fasciculatus_S2_contig8849.16943.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8849.16943.1
Unique NamemRNA_E_fasciculatus_S2_contig8849.16943.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G783_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.270e-67
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAPDSG 327
            QLAMYSIVFYLPMALW+EGPLFQGWTV+AGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAPD+G
Sbjct:   96 QLAMYSIVFYLPMALWDEGPLFQGWTVSAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAPDTG 204          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE24_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 9.080e-67
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAPDSG 327
            QLAMYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAPD+G
Sbjct:  261 QLAMYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAPDTG 369          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUK8_THAPS)

HSP 1 Score: 98.2 bits (243), Expect = 2.300e-22
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEEGP---LFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAP 318
            QLA  SI  Y+   LW+EG     F GW++  G+LS+LG+AGG+LVAL++K+ D++LKT AT+GAI+++A   HF LG PL   + +     V+S+ NY+ D +P  AP
Sbjct:  174 QLAFTSIPIYIAFILWDEGGDIGYFGGWSITTGVLSMLGAAGGLLVALSIKHGDSILKTLATTGAIVLSATLDHFLLGGPLTPIMCIAGTQVVISICNYTFDASPPEAP 282          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZA06_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.510e-20
Identity = 50/109 (45.87%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEEGPL---FQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPVAAP 318
            QLA  SI  Y+    WE+G +   F GW+V AGIL++LG+AGG+LVAL++K+ D++LKT AT+GAI+++A   H+ LG PL   + +     V+S+ NY+ D +P  AP
Sbjct:  246 QLAFGSIPIYVMFMFWEDGGIAGYFGGWSVVAGILALLGAAGGMLVALSIKHGDSILKTLATTGAIVLSAALDHYLLGGPLTNIMCIAGVIVVISICNYTFDMSPPEAP 354          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S1P2_9SPIT)

HSP 1 Score: 91.3 bits (225), Expect = 1.810e-20
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEEGPL-FQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAP 306
            QLA +SI+ Y P+ L++     FQGWT  AG+ + +G  GG+LVAL++KY D+++KT AT+GAI+ T +     L  P  +PI  GA   ++S+ NY+D G P
Sbjct:  106 QLAFWSIIIYTPIMLYDNPRRPFQGWTAMAGVCAFVGGVGGVLVALSIKYADSIMKTIATTGAIVFTTILNAAFLDGPFTLPIMAGAVIVMVSVCNYNDKGDP 208          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUX6_9ARCH)

HSP 1 Score: 90.9 bits (224), Expect = 1.890e-19
Identity = 44/113 (38.94%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMAL----------WEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPV 309
            QL +YS++ Y  + +          W++   +  W+V   +++VLG+AGG+LVA T+KY D++LKT A +GAI+++ V GH+ L  PLD+ I +GA  T++++ NY+ D  PV
Sbjct:  223 QLGLYSLLMYGGIIMYESIFADDEAWDKRAAWSNWSVITVLVAVLGAAGGLLVAATLKYADSILKTLAAAGAIVLSTVLGHYLLTGPLDVVISIGAIVTIIAIANYTLDATPV 335          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNR6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.360e-19
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWE-----EGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYS 291
            QLA  SI     + +WE        LF+GWT+N  ++ ++ + GG+LVA T+KY D+VLKT ATSG+I+++AV G+F LG  LD+ IG+G   T+L++ NY+
Sbjct:  253 QLAFCSIWILSIVVVWEMQQSSRVELFKGWTINTWLIMLIQACGGLLVAATLKYADSVLKTLATSGSIVISAVLGYFLLGGDLDVFIGLGCVSTILAICNYT 354          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Hypothetical (protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RKE7_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 7.720e-19
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEE--GPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDD 297
            QLA+YSI  YLPMA W E  G L +GWT     +++L ++GGILVAL++ Y+++V KT A  GA+++T V GH   G+PL+ PI +G    +LS+  Y DD
Sbjct:  253 QLAVYSIAIYLPMA-WVETDGHLLEGWTWLVWCIAMLHASGGILVALSVLYSNSVTKTVAVCGALVLTTVLGHVLFGAPLNGPILLGCAVVILSIFGYRDD 352          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PD05_RETFI)

HSP 1 Score: 88.2 bits (217), Expect = 1.090e-18
Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDG 300
            QLA++S + Y P +L  +G  F+ WT    I+S+LG++GG+LVA +MKYTDA++K  ATSGAI++ A GG   L  P  IP+ V +   V+++  Y  DG
Sbjct:  187 QLAVFSFLLYFP-SLHNDG-YFKNWTAITLIISILGASGGLLVAFSMKYTDAIIKALATSGAIVLAATGGAIWLNGPFGIPVAVSSISVVVAIFTYVTDG 284          
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Match: Hypothetical (protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BES9_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 5.700e-18
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 QLAMYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAVLKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYS 291
            QLA YS+V YLP A+W    LF GW+    ++++LG+ GGIL+ L + Y D+++K  A S AII+TAV   F    P+ +PI    G  V+S++NY+
Sbjct:  247 QLASYSLVIYLPTAVWVNPSLFYGWSPLTWVVALLGAFGGILIGLVINYCDSIVKNLALSCAIILTAVIDFFCFAGPMTLPIIAAGGSIVVSIINYT 343          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8849.16943.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.270e-6797.25protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.080e-6799.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.300e-2245.87protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
Hypothetical1.510e-2045.87protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Hypothetical1.810e-2043.69protein (Fragment) n=1 Tax=Strombidinopsis acumina... [more]
Uncharacterized1.890e-1938.94protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Hypothetical2.360e-1945.10protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Hypothetical7.720e-1947.52protein n=1 Tax=Pyramimonas obovata TaxID=1411642 ... [more]
Uncharacterized1.090e-1845.00protein n=1 Tax=Reticulomyxa filosa TaxID=46433 Re... [more]
Hypothetical5.700e-1843.30protein n=2 Tax=Haptolina ericina TaxID=156174 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8849contigE_fasciculatus_S2_contig8849:4021..4365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score207.6
Seed ortholog evalue3e-51
Seed eggNOG ortholog2880.D7G783
Model size345
KEGG koko:K15272
KEGG TC2.A.7.12
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.pyrimidine nucleotide-sugar transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG2234@2759
Ec32 ortholog descriptionUDP-galactose transporter
Ec32 orthologEc-01_010710.1
Cds size336
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.4435973-UTR-E_fasciculatus_S2_contig8849:4020..40291696842539.4435973-UTR-E_fasciculatus_S2_contig8849:4020..4029Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8849 4021..4029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.4595213-CDS-E_fasciculatus_S2_contig8849:4029..43651696842539.4595213-CDS-E_fasciculatus_S2_contig8849:4029..4365Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8849 4030..4365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8849.16943.1prot_E_fasciculatus_S2_contig8849.16943.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8849 4030..4365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8849.16943.1

>prot_E_fasciculatus_S2_contig8849.16943.1 ID=prot_E_fasciculatus_S2_contig8849.16943.1|Name=mRNA_E_fasciculatus_S2_contig8849.16943.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=112bp
MYSIVFYLPMALWEEGPLFQGWTVNAGILSVLGSAGGILVALTMKYTDAV
LKTFATSGAIIVTAVGGHFTLGSPLDIPIGVGAGCTVLSLLNYSDDGAPV
AAPDSGGGGGGS
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mRNA from alignment at E_fasciculatus_S2_contig8849:4021..4365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8849.16943.1 ID=mRNA_E_fasciculatus_S2_contig8849.16943.1|Name=mRNA_E_fasciculatus_S2_contig8849.16943.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8849:4021..4365+ (Ectocarpus fasciculatus EfasUO2)
CAGCTGGCGATGTACTCCATCGTGTTCTACCTTCCGATGGCGCTGTGGGA GGAGGGCCCGCTGTTCCAGGGGTGGACCGTCAACGCCGGTATCCTGTCGG TCCTTGGTAGCGCCGGCGGCATCCTCGTGGCCCTGACCATGAAGTACACC GACGCCGTGCTCAAGACGTTCGCCACGTCGGGGGCGATCATCGTAACCGC CGTCGGGGGACACTTCACCCTGGGGTCTCCGCTGGACATCCCGATCGGAG TCGGGGCCGGCTGCACCGTGCTATCTCTGCTGAACTACAGCGACGACGGA GCTCCGGTGGCCGCCCCCGATAGCGGCGGCGGTGGTGGAGGGAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8849:4021..4365+

>mRNA_E_fasciculatus_S2_contig8849.16943.1 ID=mRNA_E_fasciculatus_S2_contig8849.16943.1|Name=mRNA_E_fasciculatus_S2_contig8849.16943.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=336bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8849:4021..4365+ (Ectocarpus fasciculatus EfasUO2)
ATGTACTCCATCGTGTTCTACCTTCCGATGGCGCTGTGGGAGGAGGGCCC
GCTGTTCCAGGGGTGGACCGTCAACGCCGGTATCCTGTCGGTCCTTGGTA
GCGCCGGCGGCATCCTCGTGGCCCTGACCATGAAGTACACCGACGCCGTG
CTCAAGACGTTCGCCACGTCGGGGGCGATCATCGTAACCGCCGTCGGGGG
ACACTTCACCCTGGGGTCTCCGCTGGACATCCCGATCGGAGTCGGGGCCG
GCTGCACCGTGCTATCTCTGCTGAACTACAGCGACGACGGAGCTCCGGTG
GCCGCCCCCGATAGCGGCGGCGGTGGTGGAGGGAGC
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