mRNA_E_fasciculatus_S2_contig884.16935.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig884.16935.1
Unique NamemRNA_E_fasciculatus_S2_contig884.16935.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig884.16935.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW1_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.680e-36
Identity = 84/203 (41.38%), Postives = 124/203 (61.08%), Query Frame = 1 
Query:   43 QQVFLEDLTLVIDVSLMLAFATAIYLLRQKLITVATLAHALSVSLMVLTVGHYFERHLIGDMDGVEDLVRRHRSGRKGGAGGRWFSGWSSAALVSAAAVLLLVLRFWHCKRGGVDCIVGESAPVHYRCKVRRLRFFAPVFSATVVFVYLCIGARLNALLGGSVLHPKGGGYALAVLTSPTLLSTLCISGCASVLLYAILIEEQ 651
            QQV LEDL+ +ID  ++LA  TA+Y LR++ +++ TL +ALS++L+  TVGHY E+H+ G+  G++DLV  + S   G          S + LV AA++  L+     C+    DCI GE A  H++CKV RLR    V+ ++  F++     R+NA++GGSVLHP+GGG ALAVL SP L + +    C    L+A L + Q
Sbjct:    6 QQVLLEDLSALIDGVILLACVTALYSLRRQELSLCTLTYALSLALLTATVGHYLEQHVFGEA-GIQDLVL-YPSRSAGSV--------SVSLLVCAASIGALMCSLTRCQPLSFDCIAGEYAMTHHQCKVHRLRHALRVWLSSAAFLWAAAALRMNAVVGGSVLHPRGGGCALAVLRSPELAACVVAGACGGAWLHAQLAQVQ 198
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig884.16935.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.680e-3641.38protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig884contigE_fasciculatus_S2_contig884:2929..4855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size715
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_002860.1
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842538.703905-CDS-E_fasciculatus_S2_contig884:2928..29871696842538.703905-CDS-E_fasciculatus_S2_contig884:2928..2987Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 2929..2987 -
1696842538.715342-CDS-E_fasciculatus_S2_contig884:3425..35841696842538.715342-CDS-E_fasciculatus_S2_contig884:3425..3584Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 3426..3584 -
1696842538.7257714-CDS-E_fasciculatus_S2_contig884:4006..41531696842538.7257714-CDS-E_fasciculatus_S2_contig884:4006..4153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 4007..4153 -
1696842538.7379322-CDS-E_fasciculatus_S2_contig884:4506..48551696842538.7379322-CDS-E_fasciculatus_S2_contig884:4506..4855Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 4507..4855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig884.16935.1prot_E_fasciculatus_S2_contig884.16935.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig884 2929..4855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig884.16935.1

>prot_E_fasciculatus_S2_contig884.16935.1 ID=prot_E_fasciculatus_S2_contig884.16935.1|Name=mRNA_E_fasciculatus_S2_contig884.16935.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=238bp
MSGNPHHDSSFSPTQQVFLEDLTLVIDVSLMLAFATAIYLLRQKLITVAT
LAHALSVSLMVLTVGHYFERHLIGDMDGVEDLVRRHRSGRKGGAGGRWFS
GWSSAALVSAAAVLLLVLRFWHCKRGGVDCIVGESAPVHYRCKVRRLRFF
APVFSATVVFVYLCIGARLNALLGGSVLHPKGGGYALAVLTSPTLLSTLC
ISGCASVLLYAILIEEQVLTPNDHSRGNTTSTLPQPQD
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mRNA from alignment at E_fasciculatus_S2_contig884:2929..4855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig884.16935.1 ID=mRNA_E_fasciculatus_S2_contig884.16935.1|Name=mRNA_E_fasciculatus_S2_contig884.16935.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig884:2929..4855- (Ectocarpus fasciculatus EfasUO2)
ATGAGCGGTAACCCTCACCATGACTCTTCCTTTTCTCCTACCCAACAAGT
GTTCCTGGAAGACCTCACCCTGGTGATCGACGTTTCCCTCATGCTAGCCT
TCGCCACCGCCATTTACCTCCTCCGACAGAAGCTGATCACTGTCGCAACT
CTCGCCCACGCCCTGTCCGTCAGTCTTATGGTTCTCACCGTGGGACACTA
TTTCGAGCGACACTTGATCGGCGACATGGACGGCGTGGAAGACCTCGTGC
GGCGTCATAGGTCAGGGCGAAAAGGAGGAGCGGGGGGGAGGTGGTTCTCT
GGATGGTCCAGTGCTGCGTTGGTGTCGGCCGCAGCTGTCCTTCTGCTTGG
TGCGTACATGTGGGTGTTCGAGGCCTTGGGCGCTTCCTCCAAGTTATTTC
AGTGCTCGCTCGACGGAATCTAATCCGTCGACCGGCTGTGCAGCTAAAAC
CATGTCTATTCTAGGTTACACTAGTAAGCGTAAGGCTTGCCAAGGACATA
GCTGTTGGCCTTAAAAATTTAGACACGTATGTAGTCTGAGCGGCATGATC
AAATGTCTGCTGAAAATGTGGGCATACATACCTTACCTATTGGTGAACGT
CAGCGCTACATACATGTTTTGGGGGGCCTTCCTGTCCACGACACTGATCC
AGACGCTATTTTACCTTCTGTTCCCTGTACCACGCCACATCAAACAACAA
AGTCCTTCGGTTCTGGCACTGCAAAAGAGGAGGCGTCGACTGCATCGTCG
GCGAATCCGCCCCGGTCCACTACCGGTGCAAAGTTAGGCGACTTCGGTTC
TTCGCCCCAGTGTTCTCGGCGACGGTTGTGTTTGTGTACCTGTGCATTGG
TGAGTGATGGGGCACGACAACTCCATGTCACTCTCTTGCTGCCGTGTACA
GTATTGCTCGCTCCTTCTTCGAGTAGTCTATACCCCAATTTATTGGTTCT
CCCCGACGAATATAGCTCACCATCGATGACGAGTGCTCTGTTTGCTTCTG
CCATTTGTTGTATATACGCGTAAACCTTTCCCTGGAAGCAAGAATGCAGA
AAGAAGTTTCTGATACCCACGTTAAGTTCACAACAGTAACTTATGTGGAG
TGTCTGCTACATCTCGGTATTGGGTAGAAATGCCCGACCAAATCGCCGCG
AGAAAAGGGCCAGTCCTACCGTAGCATAAATACTTGTAGACTGCTGCGGG
TTTCGATCCGAATGAATCCTCCATACTGATCGATGTCGTCTCTTGGCACT
GTTATGGGGATATACGTGCAGGCGCAAGACTCAACGCTTTGCTTGGGGGA
AGCGTTCTTCACCCCAAGGGTGGAGGCTACGCGTTAGCCGTGCTCACCAG
CCCCACTCTGCTGTCGACGCTGTGCATCTCCGGCTGTGCCTCGGTTTTGC
TCTACGCCATCCTGATAGAGGAACAGGTGCGTACCCAAACGTTGCTCTTT
ACCGGTTGCTACCTACGTATACCAAGCACGCGCTACGTTCAAGGTAAACA
CGTCAACATCTTTCAGTGATGCATGTTCTAGGAATGTCGACCATACTCGG
CATCGTTTAGTTGGACGAACACGAGAATCGCTTGAAAACATCGTGGCGCG
CGTTTTGAATCAGGCGCTGCTTTGTAGCAGACTTGTCTTCATGGCGATTC
CTGAAAAGGTGGTTGCTAGATATACATTCTACTCCCTGATTGCGCAAGTT
CCACGGCTAAATCACTCCTGTGGATTCTCAGGTTGTCTGGGATCGTGGTC
CTCGATCACCCGTTCCGTCCATGCCAACACCCCAACAACACCGTCGTCGC
TATCCGATCCCCGCTCACTCCGTGAACGATGTTGTGGTTTTCTCTCCCGA
AAAGGCTAACAGTAGCAGTGACCCCAAACGATCACAGCCGCGGGAACACC
ACGTCGACACTCCCGCAGCCCCAAGAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig884:2929..4855-

>mRNA_E_fasciculatus_S2_contig884.16935.1 ID=mRNA_E_fasciculatus_S2_contig884.16935.1|Name=mRNA_E_fasciculatus_S2_contig884.16935.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=714bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig884:2929..4855- (Ectocarpus fasciculatus EfasUO2)
ATGAGCGGTAACCCTCACCATGACTCTTCCTTTTCTCCTACCCAACAAGT
GTTCCTGGAAGACCTCACCCTGGTGATCGACGTTTCCCTCATGCTAGCCT
TCGCCACCGCCATTTACCTCCTCCGACAGAAGCTGATCACTGTCGCAACT
CTCGCCCACGCCCTGTCCGTCAGTCTTATGGTTCTCACCGTGGGACACTA
TTTCGAGCGACACTTGATCGGCGACATGGACGGCGTGGAAGACCTCGTGC
GGCGTCATAGGTCAGGGCGAAAAGGAGGAGCGGGGGGGAGGTGGTTCTCT
GGATGGTCCAGTGCTGCGTTGGTGTCGGCCGCAGCTGTCCTTCTGCTTGT
CCTTCGGTTCTGGCACTGCAAAAGAGGAGGCGTCGACTGCATCGTCGGCG
AATCCGCCCCGGTCCACTACCGGTGCAAAGTTAGGCGACTTCGGTTCTTC
GCCCCAGTGTTCTCGGCGACGGTTGTGTTTGTGTACCTGTGCATTGGCGC
AAGACTCAACGCTTTGCTTGGGGGAAGCGTTCTTCACCCCAAGGGTGGAG
GCTACGCGTTAGCCGTGCTCACCAGCCCCACTCTGCTGTCGACGCTGTGC
ATCTCCGGCTGTGCCTCGGTTTTGCTCTACGCCATCCTGATAGAGGAACA
GGTGCTGACCCCAAACGATCACAGCCGCGGGAACACCACGTCGACACTCC
CGCAGCCCCAAGAT
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