mRNA_E_fasciculatus_S2_contig8824.16920.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8824.16920.1
Unique NamemRNA_E_fasciculatus_S2_contig8824.16920.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8824.16920.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.810e-45
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:  229 MEPYQKKHAFAPLEACARVLSPLLKDGRKEFFETLVLLVDATKIVYNGQKAMWTHFPGAPEQRAKVCTIMMDNGTFGAAADLLEQQA 489
            MEPYQKKHAFA LEACARVLSPLLKDGR EF ETLVLLVDATKI+YNGQKAMWTHFPGAPEQR KVC IMMDNGTFGAAADLLEQQA
Sbjct:    1 MEPYQKKHAFATLEACARVLSPLLKDGRMEFLETLVLLVDATKILYNGQKAMWTHFPGAPEQRTKVCMIMMDNGTFGAAADLLEQQA 87
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BLAST of mRNA_E_fasciculatus_S2_contig8824.16920.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.140e-45
Identity = 95/163 (58.28%), Postives = 96/163 (58.90%), Query Frame = 1 
Query:    1 DRRRPAVQRRVEPPVDLTPFDNVRQGLADNNTVGWSLAPISIELATKIYPHPRAIVFLSDFLHQVTGIMLDQPVNKMEPYQKKHAFAPLEACARVLSPLLKDGRKEFFETLVLLVDATKIVYNGQKAMWTHFPGAPEQRAKVCTIMMDNGTFGAAADLLEQQA 489
            DRRRPAVQRRVEPPVDLTPFD+VRQGLADNNTVGWSLAP SIELATKIYPHPRAI FLSDFLHQVTGIMLDQ                                                                 QRAKVCTIMMDNGTFGAAADLLEQQA
Sbjct:   13 DRRRPAVQRRVEPPVDLTPFDSVRQGLADNNTVGWSLAPTSIELATKIYPHPRAIGFLSDFLHQVTGIMLDQ-----------------------------------------------------------------QRAKVCTIMMDNGTFGAAADLLEQQA 110
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8824.16920.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.810e-4593.10protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized2.140e-4558.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8824contigE_fasciculatus_S2_contig8824:3221..6185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size492
Hectar predicted targeting categoryother localisation
Exons3
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842537.5302765-CDS-E_fasciculatus_S2_contig8824:3220..34361696842537.5302765-CDS-E_fasciculatus_S2_contig8824:3220..3436Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8824 3221..3436 +
1696842537.5460203-CDS-E_fasciculatus_S2_contig8824:4555..47501696842537.5460203-CDS-E_fasciculatus_S2_contig8824:4555..4750Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8824 4556..4750 +
1696842537.5553114-CDS-E_fasciculatus_S2_contig8824:6105..61831696842537.5553114-CDS-E_fasciculatus_S2_contig8824:6105..6183Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8824 6106..6183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8824.16920.1prot_E_fasciculatus_S2_contig8824.16920.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8824 3221..6183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8824.16920.1

>prot_E_fasciculatus_S2_contig8824.16920.1 ID=prot_E_fasciculatus_S2_contig8824.16920.1|Name=mRNA_E_fasciculatus_S2_contig8824.16920.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=163bp
DRRRPAVQRRVEPPVDLTPFDNVRQGLADNNTVGWSLAPISIELATKIYP
HPRAIVFLSDFLHQVTGIMLDQPVNKMEPYQKKHAFAPLEACARVLSPLL
KDGRKEFFETLVLLVDATKIVYNGQKAMWTHFPGAPEQRAKVCTIMMDNG
TFGAAADLLEQQA
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mRNA from alignment at E_fasciculatus_S2_contig8824:3221..6185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8824.16920.1 ID=mRNA_E_fasciculatus_S2_contig8824.16920.1|Name=mRNA_E_fasciculatus_S2_contig8824.16920.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2965bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8824:3221..6185+ (Ectocarpus fasciculatus EfasUO2)
GACCGCAGACGGCCAGCGGTGCAGCGCAGGGTGGAGCCCCCAGTCGACCT
CACTCCCTTCGACAACGTGCGCCAGGGTCTGGCGGACAACAACACGGTGG
GGTGGAGCCTCGCGCCAATATCGATCGAGCTTGCGACGAAGATCTACCCC
CACCCGCGGGCCATCGTTTTCTTGAGTGACTTTTTGCACCAGGTCACTGG
AATTATGCTTGACCAGGTGGGTTGGGTTCTATGGGGTTAGGTCGGGGTGG
AGGGGTACGAGGTTCGTTGTACATGCATGCCTCTACACACCACTGTCTGG
ATTCGAAATTTCGTGGGTGCAGGCAGCACGTGGGTTCGGTGTGGCAGATG
TGTCGGTCCATCGTGCCGATCCTCAACACGAAGGCGAGTAAAGCTTACCC
AAACCGTGGCCATGATAACTTTGGCACGGTCGAATAGTTACAGTTACTGT
CTGTCTCAAGGCAAGGAAGATGAACCATCCGCCCCGCCTCTCTACCCCCT
CCGTACCTACAATATAGCAGTGGCCTCGCCGTTATTTTGTCGTCTTGCTT
CGTGAGTTTCCAAGGACAAGATCTGAGCGCGTGTTTGTGTATGTTCAAAT
GTTAGTGTATCCCTCCTGTACCACCCCACTGGCACGACCAAAAACCCGTC
GCTTCTTGTTACGAACGCTGTGCCGCCTCATCCTTAACTTCTACGCCGAG
GAGAAATATGGCCGGAGCTACTCCCTGCCTGTTGTCCTTGTGTATATTCC
TTGATATTGTCCTATATTGCTTGGCTTGAACGGCAACCAAAACTCCGCTG
GCCTCTATGTGGTGTGGCAGCAACGGGATCGGGGCATTGCCCTCGTCATT
TTATTTTTTATTTTTTTTCCTTGTCGGGAGGCGGCATGGCAGAACGAAGT
CACGAATCAGTTTTACTTGGAAGAGGTGCGCCGACTCTGCTTCTGGCCTC
AAACTGAACGGCTTGTTCGTACCCGTGGGGAATCTCAAAACATACGGGTG
TTGTTTGTGTTGTGCGTTCTGTCACGGAACCCCCCGTCTGGGTCCCTCCC
TCTTCCCGAAAACCTCTCCATTTCACCTCCCCCCGGTCTGGCACAGCAAA
CGCAAGGACGATGACGATCAGCTTCTGGTTCATCCTTATCCTTGTGAAAC
GTAGCCTGGGCTGGCGAAAGCCCTGCATCATATCGCTCCTCCGTCATTTT
AGGGATGCGAGGTCAATGGTCAAACGAATGCGGCATGCGCTTCATGAGTA
CCCACCCGCCCCCCTCGGCCCGGCCGAATCCCGCCCAAACTCACCCCAAC
GACCCGCCGCCGCCCCCCCCCTCCGCGACGAGCAGCCCGTGAACAAGATG
GAGCCTTACCAGAAGAAGCACGCCTTCGCCCCCCTGGAAGCCTGCGCGAG
AGTGCTGTCGCCGCTGCTCAAGGACGGGCGGAAGGAGTTCTTCGAGACGC
TCGTGCTGCTGGTGGACGCGACCAAGATCGTGTACAATGGGCAGAAGGCC
ATGTGGACACACTTTCCCGGCGCGCCGGAGGTGAGATGTGTGACGTGCGA
GAGACACAAAGCACCCGTACGAGGCGGAGAGATGGCACGCCCCCCCCCCC
CCGTAGACTGGCTTTTAACCCTCGATTGCTCCACAACCACGGGCGTACGG
AAGCAGCCCGATACCTCTACTGAAGGAAGACCTTCGACGAGATATGTGTT
TCCGACACCACTGTTTTTGGTGTGGGCGCGATCTCTGTTGTGGAGCAATC
GGGCTTCGAAAACAGGTGTTGGGGGGGAGCTCAGCCTCTTACGGTAAAAC
GAAAAGAGAGAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA
GCTACCGCTTACGGGCCGAGGCGAAACCTTGGATAGATTGGTATGATAGC
ACGCGGCGGTGGATGGGTTGGTGGACGGAGAGCATGGCGGTACTACTTCG
AAGCGGTTGTGGCGGCGTGGTTGTTCCGCTTGCTGTCACTTGCTGGTTGT
GAGCGGTTATTCCGTTTTAGAGCCCAGGATTACCCCGTCGTAGTGGTGGC
GGATAATCTACGTGATCTATGACAGCCGTGAACTGCGACGTTTATTGTCT
GGTTGGATTCATTTTTTTAAAAGTGACCGTATGTAACTGAAAGAGAGTCG
TGCTAAGTTGGCGTGGATCGGAAATTGCATGTGATTGCTATTGGGCAAAT
AGATAAAACGCTGGGCAAATAGATAAAACGCTCGGGATACGGGTACGCCG
AGTCCCACCGTGATTTGACATTGCTTTTGATGACTACTGCTGTTTGTGTA
GAGTTAACAGTGTTGATGATTGAAGTAGGAAACCCTCAAGACACGCATGA
CCCCGGTACGTCGGTCGCAGCCTCTGTGCACGGTAGTGTCGATGCGCCGT
CTCACTCAGCAGATCATCAATTCCTGTGCGCTTGTACCATTTTTGGAACT
ACACGGGGCAGCTCAGCTGTTCCGATGGCGTAGTACGTCGTTAACTTCCA
TGCCACATGATAACGAACGCACAGTATTTGTCTGGGTCGCCCTTGCTTGC
TTTCTGTCGCGAGGGCTCTTTTCTTGCCCGACATGGACCAGGTTCTAGTG
GGTTGCATGAAACTGCGGCCGTTGCTTTCCCCCTGCAAGAGTAATGCAAT
CTTCCCCCACGCCGGCCCCCGTGTCACCCACGTTTGACGATACAGAAATG
CGTTAGATCACTGCAACCCGCACCCCTCTCTCACCCCCCCTCGTCGTACG
ACTTTAACCGCACCAGTTGACAAAGAGTACCCATGCCATCGTGTGATCTA
TTCGAGGACTAACCTGCCGACGCATTCTATCGGCGGCCACCACCACCTCA
CACCAAACGCTGCCCCACTTACTCCCCCAAAACAGCAACGCGCCAAGGTC
TGCACGATCATGATGGACAACGGCACCTTCGGCGCCGCGGCGGACCTCCT
CGAGCAGCAGGCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8824:3221..6185+

>mRNA_E_fasciculatus_S2_contig8824.16920.1 ID=mRNA_E_fasciculatus_S2_contig8824.16920.1|Name=mRNA_E_fasciculatus_S2_contig8824.16920.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=489bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8824:3221..6185+ (Ectocarpus fasciculatus EfasUO2)
GACCGCAGACGGCCAGCGGTGCAGCGCAGGGTGGAGCCCCCAGTCGACCT
CACTCCCTTCGACAACGTGCGCCAGGGTCTGGCGGACAACAACACGGTGG
GGTGGAGCCTCGCGCCAATATCGATCGAGCTTGCGACGAAGATCTACCCC
CACCCGCGGGCCATCGTTTTCTTGAGTGACTTTTTGCACCAGGTCACTGG
AATTATGCTTGACCAGCCCGTGAACAAGATGGAGCCTTACCAGAAGAAGC
ACGCCTTCGCCCCCCTGGAAGCCTGCGCGAGAGTGCTGTCGCCGCTGCTC
AAGGACGGGCGGAAGGAGTTCTTCGAGACGCTCGTGCTGCTGGTGGACGC
GACCAAGATCGTGTACAATGGGCAGAAGGCCATGTGGACACACTTTCCCG
GCGCGCCGGAGCAACGCGCCAAGGTCTGCACGATCATGATGGACAACGGC
ACCTTCGGCGCCGCGGCGGACCTCCTCGAGCAGCAGGCG
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