mRNA_E_fasciculatus_S2_contig882.16914.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig882.16914.1
Unique NamemRNA_E_fasciculatus_S2_contig882.16914.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI5_ECTSI)

HSP 1 Score: 483 bits (1242), Expect = 1.970e-163
Identity = 315/482 (65.35%), Postives = 331/482 (68.67%), Query Frame = 1
Query:    1 MEPSARCCDKQXXXXXXXXXXXXXXXXXXXXXXXXLYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGARGAGLSHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVL-GDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSVEGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDER 1443
            ++PSARCCD+ XXXXXXXXXXXXXX          LYYKYIPLGEEGR VVKDWYVEHC  E LRGRVRVALDGVNCTLGGSLAALRRHIGSVEAH  LRG  IDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLG RGAGLSHLEGGRHVSPQEFHRLLQE AAR +QAH+VV  + GGR SSG+ESV                 V  SS DAPTPA DRGGDLAEA P RRSGHGTVVARAM EGAS VSEGCA AP+PA A   A+VGK  +GG G+KGD+DV  G  +SAGANA DATVAEEKEAVLLDVRNVYETSIGRF                              +G+ RVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQ    S G  G                                               +QS EGFF GKNFVFDER
Sbjct:    5 LDPSARCCDQXXXXXXXXXXXXXXXEETGGIL---LYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHVALRGHDIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGTRGAGLSHLEGGRHVSPQEFHRLLQEGAARNRQAHKVVCDEGGGRTSSGKESVAATAGGV----------VGLSSLDAPTPADDRGGDLAEATPTRRSGHGTVVARAMNEGASTVSEGCAGAPAPAAAP--AIVGKSLQGGEGDKGDKDVPPGCSESAGANAEDATVAEEKEAVLLDVRNVYETSIGRF------------------------------RGK-RVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQ----SAGGGG-----------------------------------------------EQSPEGFFRGKNFVFDER 389          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: UPF0176_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K881_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 8.150e-117
Identity = 250/424 (58.96%), Postives = 262/424 (61.79%), Query Frame = 1
Query:    1 MEPSARCCDKQXXXXXXXXXXXXXXXXXXXXXXXXLYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGAR----------------------------------------------------------------------------------------------GAGLSHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXX--VDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRF 984
            +EPSARCCD+Q                        LYYKYIPLGEEGR  VKDWYVEHC  E LRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHA L+G  IDFKLASSRGARNSQAAQESGFTTLSVK VKEVVTLG R                                                                                              GAGLSHLEGGRHVSPQEFHRLLQE AAR +QAH+V  G+ GGRVSSGRESV   XXXXXXXXXXXXXX  V  SS DAPTPA DRGGDLAEA P RRSGHGTVVARA KEGAS VS+GCA AP+P  A   A+VGK  RGG  +K D+D+ G  D AGANA DATVAEEKEAVLLDVRNVYETSIGRF
Sbjct:    5 LEPSARCCDQQQQDPAVAAAPRGASEDTGGVL---LYYKYIPLGEEGRTAVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAALQGHDIDFKLASSRGARNSQAAQESGFTTLSVKEVKEVVTLGTRVSFFDISLPGRLHNRSVFLAKVPPHVKRRAVERLLAATITHKASHEFSFRRHTCFFSLPAATVSRSDHVFRCHLHTAVHKKVSHMIYTRTLRFQGAGLSHLEGGRHVSPQEFHRLLQEGAARNRQAHKVACGERGGRVSSGRESVAATXXXXXXXXXXXXXXXVVGLSSLDAPTPADDRGGDLAEATPTRRSGHGTVVARATKEGASTVSDGCAGAPAPVAAL--AVVGKKLRGGEADKRDKDLPGCSDGAGANAEDATVAEEKEAVLLDVRNVYETSIGRF 423          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BKJ0_9CHLO)

HSP 1 Score: 236 bits (603), Expect = 9.710e-64
Identity = 183/513 (35.67%), Postives = 240/513 (46.78%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLG--ARGAGLSHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSP-ATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSV-EGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSV-PE-----SPAGGV---------VMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDACISS 1587
            LYYKY+PL       V ++Y E C    LRGR+RVA DG+N T+GGS++AL+ H  +V AH +LRG  IDFKLA+S G RN     E+    L V+  +E+VTLG  AR           H++P++FH+LL+   A       V  GK  G  + GRE                     + +           G   +     RS  GT V     +G        A  P+  A AT T  +   G G GG  G     GDG   GA+   +        VLLD RN+YET IG F     + TLDP+TR FSDLP W+D + + LR     VLMYCTGGVRCE ASA +R   +     + V QLSGGI+RYL+ +P                                                           G+F GKNF++D+R++V PE     SP  G          V+GRC++C  PWDDYG+R RC+RCR+LVLVCD C ++
Sbjct:   30 LYYKYLPLQGGDAEHVANFYTELCNRLDLRGRIRVARDGINVTVGGSMSALQAHAAAVTAHPLLRGSDIDFKLAASGGPRNEVTRSETKMDRLVVRLCEELVTLGPLARHRADPRASTAPHLTPEQFHQLLERATA----GVAVPPGK--GIWAGGRELPEPAVSGAHVRWQAAPAAAAAPAAAXXXXXXXXXGSAFDGA--ARSPPGTCVEGIAAQGGKPGGGVRALVPADDAAATFTGAISGSGVGDGGTNGVRRTGGDG---GADGSVSVFGAAGSVVLLDARNIYETRIGHFHAGPSVTTLDPRTRCFSDLPAWLDAHEELLRNRT--VLMYCTGGVRCERASAYLR---EKGPEFSHVFQLSGGIQRYLERFPDG---------------------------------------------------------GYFRGKNFLYDDRIAVGPEGTEQVSPRPGASSSFPLSSGVVGRCLMCRCPWDDYGARLRCSRCRLLVLVCDTCSAA 469          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C990_9CHLO)

HSP 1 Score: 224 bits (570), Expect = 2.290e-59
Identity = 181/528 (34.28%), Postives = 238/528 (45.08%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLG--ARGAGLSHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRG---KEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATS------------TAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSV-EGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSV-PE---------------SPAGGVVMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDACISS 1587
            LYYKY+PL       V  +Y E C    LRGR+RVA DGVN T+GGS++AL+ H+ +V  H +LRG  IDFKLA+S G RN     E+    L V+  +E+VTLG  AR           H++P++FH++L            V+ G     G  VS+G   V                        AP  +G      A A P   SG G+    A +       E   +  +P + T              A +    RG G       V G G S     GD   A     VLLD RN+YET IG F     + TLDP+TR FSDLP W+D + + LR     VLMYCTGGVRCE ASA +R   +     + V QLSGGI+RYL+ +P                                                           G+F GKNF++D+R++V PE               SP+ GVV GRC++C   WDDYG+R RC+RCR+LVL+CD C ++
Sbjct:   30 LYYKYLPLQGGDAEDVTKFYTELCSRLDLRGRIRVARDGVNVTVGGSMSALQAHVAAVTEHPLLRGSDIDFKLAASGGPRNEVTRSETKMDRLVVRLCEELVTLGPLARHRADPRANTAPHLTPEQFHQILDG----------VIAGLPVPPGEGVSAGSRVVP-----------------------APAASGTHLRPEAAAAPTVGSGPGSKSTAAKRNPLGTCVEDVEDVEAPRSNTGGRGGALAPAGHPAATLTDASRGSG-------VEGCGISCIHRTGDNAAAGS--VVLLDARNIYETRIGHFDAGPAVTTLDPRTRCFSDLPAWLDAHEELLRNRT--VLMYCTGGVRCERASAYLR---EKGPEFSRVFQLSGGIQRYLERFPDG---------------------------------------------------------GYFRGKNFLYDDRIAVGPEISEQVSPRPWCSSSSSPSPGVV-GRCLMCRCSWDDYGARLRCSRCRLLVLICDTCSAA 452          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WBI6_MARPO)

HSP 1 Score: 216 bits (549), Expect = 6.980e-58
Identity = 158/494 (31.98%), Postives = 209/494 (42.31%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGARGAGL--SHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSV-EGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSVPESPAGGVVMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDAC 1578
            LYYK+  + +   +  K W  + C + GL GR+RVA DG+N T+GG L AL+ HI  V ++ +    G DFK+AS     N +AA E GFT+LS +AVKE+VTLG   +    S    GRH + QEFH++LQE A                                                            L EA                                                    +G +  L                  K+ +++D RNVYET IG+FS  EG+E +DP  RQ+SDLP W+D+N DRLR  +  +LMYCTGGVRCE+ASA +R          DV+QLSGGI+RY++A+P                                                           G+F GKNFVFD R++VP      VV+GRC+ C  P+DDY +RCRC+ CRMLVLVC  C
Sbjct:   29 LYYKFAQIDDPDGM--KTWLFDLCSSLGLLGRIRVAPDGINITVGGKLTALQEHIRVVSSNPLFT--GTDFKIASCSPPANPKAAAECGFTSLSARAVKELVTLGLHPSVQPPSVSNAGRHATAQEFHKILQERA------------------------------------------------------------LGEAQ---------------------------------------------------EGSDTSL------------------KQTIVVDARNVYETRIGKFSAGEGVEVMDPMVRQYSDLPGWIDDNEDRLRNKQ--ILMYCTGGVRCEMASAYIR---SKGKEFEDVVQLSGGIQRYMEAFPDG---------------------------------------------------------GYFVGKNFVFDHRLAVPS--LNKVVLGRCLQCNTPYDDYSARCRCSLCRMLVLVCSDC 325          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: rhodanese-like (domain-containing protein 6 isoform X1 n=2 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E15DE)

HSP 1 Score: 211 bits (537), Expect = 6.040e-57
Identity = 158/500 (31.60%), Postives = 214/500 (42.80%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGA----RGAGLSHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSVEGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSVPESPAGGVVMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDACISSAL 1593
            LYYKY P+ +   +V   +Y  +CR+ GL GRVRVA DGVN T+GG + AL +HI ++ + ++   +G DFKLAS  G  N + A+E GFT LSV+ VKE+VT  +    +   +SH   G+H+S  EFH +LQ+ A               G+VS  + S                                                                                                                   +EK+ +LLD RN+YET IG+F    +ETLDP+ RQ+SDLP W+DE+A++L QG+  VLMYCTGG+RCE+ASA +R      A   +V QL GGI+RYL+ +P                                                           GFF GKNFVFD RVSV        ++G C++C   +DDY SRCRC+ CRMLVLVC +C   A+
Sbjct:    9 LYYKYAPVPDVAALV--RFYESNCRSLGLLGRVRVAPDGVNVTVGGKMPALEKHIEALRSDSLF--EGTDFKLASCDGPSNERIARECGFTDLSVRVVKELVTFRSDPLLKPPEISH--AGKHLSATEFHSVLQDAA---------------GKVSDSQAST------------------------------------------------------------------------------------------------------------------QEKQLLLLDARNLYETRIGKFQNPDVETLDPEIRQYSDLPSWIDEHAEQL-QGKN-VLMYCTGGIRCEMASAYIR---SKGAGYENVFQLYGGIQRYLEQFPDG---------------------------------------------------------GFFKGKNFVFDHRVSVGSQDTN--ILGACLICGSSFDDYSSRCRCSYCRMLVLVCYSCQGKAV 309          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7I8A8_9ROSI)

HSP 1 Score: 210 bits (535), Expect = 1.500e-56
Identity = 162/495 (32.73%), Postives = 211/495 (42.63%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGARGA----GLSHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSVEGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSVPESPAGGVVMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDAC 1578
            LYYKY  + +   ++   +Y  +C + GL GRVR+A  GVN T+GG L++L  HI +V+A ++   +G DFKLASS    N + A E GFT+LSV+ VKE+VTL +        +S+   GRH+S  EFH LLQ                     S+G+                    +D  SP                                                                                           ++KE VLLD RN+YET IG+F    +ETLDP  RQ+SDLP W+DENA++LR G+  +LMYCTGG+RCE+ASA VR      A   +V QL GGI+RYL+ YP                                                           GFF GKNFVFD R+SV  S     ++G C+LC   +DDY SRCRCT CRMLVLVCD+C
Sbjct:   22 LYYKYAIIPDLDSLLA--FYESNCNSLGLLGRVRLAPHGVNVTVGGELSSLESHIDAVKAISLF--EGTDFKLASSHHPLNDKVAHECGFTSLSVRIVKELVTLSSHPLLNPPDISN--AGRHLSAVEFHSLLQ---------------------SAGK-------------------LLDEESP------------------------------------------------------------------------------------------TDDKELVLLDARNLYETRIGKFHTPSMETLDPSIRQYSDLPSWIDENAEQLR-GK-HILMYCTGGIRCEMASAYVR---SKGAGFENVFQLYGGIQRYLEQYPDG---------------------------------------------------------GFFKGKNFVFDHRISVGSSDEN--ILGSCLLCGSFFDDYSSRCRCTHCRMLVLVCDSC 316          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A6G1BHZ6_9ORYZ)

HSP 1 Score: 204 bits (518), Expect = 2.540e-56
Identity = 154/497 (30.99%), Postives = 204/497 (41.05%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGARGAGLSHLE---GGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSVEGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSVPESPAGGVVMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDACISS 1587
            LYYKY  + +   +    +Y  HCRA  L GRVRV  DGVN TLGG +AAL +H+  + ++ +   +G DFKLAS  G  + + A+E GFT+LSV+ VKE+VTL      L+  +    GRH+S  EFH +LQ                                             +DS +P                                                                                          AE+ E V+LD RNVYET IG+F V  + TLDP+ RQ+SDLP W+DE+A++LR G+  +LMYCTGG+RCE+ASA +R   +      +V QL GGI+RYL+ +P                                                           G+F GKNFVFD R+SV        ++G C+LC   +DDY SRCRC  CRMLVLVC  C  S
Sbjct:   26 LYYKYAEVPDAPALAA--FYASHCRALALVGRVRVGPDGVNATLGGRMAALEKHVAEMSSNNLF--EGTDFKLASCEGPVDERVARECGFTSLSVRLVKELVTL-CSNPSLATPQITCAGRHLSASEFHSVLQNVGT----------------------------------------ALDSEAP------------------------------------------------------------------------------------------AEKNEVVVLDARNVYETRIGKFHVPNVVTLDPEIRQYSDLPLWIDEHAEKLR-GKS-ILMYCTGGIRCEMASAYIRSKGEGFE---NVFQLYGGIQRYLEQFPDG---------------------------------------------------------GYFEGKNFVFDHRISVGSLKEN--ILGTCLLCGSSFDDYSSRCRCRHCRMLVLVCSTCQDS 323          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BHN3_9ORYZ)

HSP 1 Score: 203 bits (516), Expect = 2.760e-56
Identity = 153/494 (30.97%), Postives = 203/494 (41.09%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGARGAGLSHLE---GGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSVEGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSVPESPAGGVVMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDAC 1578
            LYYKY  + +   +    +Y  HCRA  L GRVRV  DGVN TLGG +AAL +H+  + ++ +   +G DFKLAS  G  + + A+E GFT+LSV+ VKE+VTL      L+  +    GRH+S  EFH +LQ                                             +DS +P                                                                                          AE+ E V+LD RNVYET IG+F V  + TLDP+ RQ+SDLP W+DE+A++LR G+  +LMYCTGG+RCE+ASA +R   +      +V QL GGI+RYL+ +P                                                           G+F GKNFVFD R+SV        ++G C+LC   +DDY SRCRC  CRMLVLVC  C
Sbjct:   26 LYYKYAEVPDAPALAA--FYASHCRALALVGRVRVGPDGVNATLGGRMAALEKHVAEMSSNNLF--EGTDFKLASCEGPVDERVARECGFTSLSVRLVKELVTL-CSNPSLATPQITCAGRHLSASEFHSVLQNVGT----------------------------------------ALDSEAP------------------------------------------------------------------------------------------AEKNEVVVLDARNVYETRIGKFHVPNVVTLDPEIRQYSDLPLWIDEHAEKLR-GKS-ILMYCTGGIRCEMASAYIRSKGEGFE---NVFQLYGGIQRYLEQFPDG---------------------------------------------------------GYFEGKNFVFDHRISVGSLKEN--ILGTCLLCGSSFDDYSSRCRCRHCRMLVLVCSTC 320          
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KVT1_SALVM)

HSP 1 Score: 201 bits (510), Expect = 3.280e-55
Identity = 151/495 (30.51%), Postives = 208/495 (42.02%), Query Frame = 1
Query:  106 LYYKYIPLGEEGRVVVKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILRGQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLG----ARGAGLSHLEGGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVXXXXXXXXXXXXXXXXXVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKEGASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGANAGDATVAEEKEAVLLDVRNVYETSIGRFSVEGIETLDPKTRQFSDLPKWVDENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHSTGDPGRAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQSREGFFCGKNFVFDERVSVPESPAGGVVMGRCVLCERPWDDYGSRCRCTRCRMLVLVCDAC 1578
            LYYKY  + +   ++   +Y  +C +  L GRVR++L GVN T+GG L++L +HI +V+A ++   +G DFKLAS     N + A E GFT+LS++ VKE+VT       +   +S+   GRH+S  EFH  LQ                                                                                                                                  SAG      ++AE+K  VLLD RN+YET IG+F +  ++TLDP+ RQ+SDLP W+D+N+++LR G+  VLMYCTGG+RCE+ASA +R      A   +V QL GGI+RYL+ +P                                                           GFF GKNFVFD R+SV  S     ++G C+LC   +DDY SRCRC+ CRMLVLVCD+C
Sbjct:   22 LYYKYTEIPDLNSLL--SFYNSNCTSLSLLGRVRLSLHGVNVTVGGKLSSLEKHIEAVKAISLF--EGTDFKLASCHFPLNDKVAHECGFTSLSIRIVKELVTFTPYPLVKAPDVSN--AGRHLSAVEFHSALQ----------------------------------------------------------------------------------------------------------------------------------SAGKLVDKESLAEDKGLVLLDARNLYETRIGKFDMPNVDTLDPRIRQYSDLPSWIDDNSEQLR-GKN-VLMYCTGGIRCEMASAYIR---SKGAGFENVFQLYGGIQRYLEQFPDG---------------------------------------------------------GFFKGKNFVFDHRISVGSSDTN--ILGTCLLCGLSFDDYSSRCRCSYCRMLVLVCDSC 316          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig882.16914.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rhodanese1.970e-16365.35domain-containing protein n=1 Tax=Ectocarpus silic... [more]
UPF0176_N8.150e-11758.96domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Rhodanese9.710e-6435.67domain-containing protein n=1 Tax=Volvox africanus... [more]
Rhodanese2.290e-5934.28domain-containing protein n=2 Tax=Volvox reticulif... [more]
Rhodanese6.980e-5831.98domain-containing protein n=2 Tax=Marchantia polym... [more]
rhodanese-like6.040e-5731.60domain-containing protein 6 isoform X1 n=2 Tax=Asp... [more]
Rhodanese1.500e-5632.73domain-containing protein n=1 Tax=Acer yangbiense ... [more]
Rhodanese2.540e-5630.99domain-containing protein n=2 Tax=Oryza TaxID=4527... [more]
Rhodanese2.760e-5630.97domain-containing protein n=1 Tax=Oryza meyeriana ... [more]
Rhodanese3.280e-5530.51domain-containing protein n=1 Tax=Salix viminalis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig882contigE_fasciculatus_S2_contig882:177..5344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score485.0
Seed ortholog evalue5.1e-134
Seed eggNOG ortholog2880.D8LKI5
Preferred nameTSTD2
Model size1771
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Rhodanase C-terminal
EggNOG OGs2QSQK@2759,COG1054@1
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-16_003090.1
Cds size1770
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig882.16914.1prot_E_fasciculatus_S2_contig882.16914.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig882 177..5344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842536.7657537-CDS-E_fasciculatus_S2_contig882:176..4021696842536.7657537-CDS-E_fasciculatus_S2_contig882:176..402Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 177..402 -
1696842536.7785628-CDS-E_fasciculatus_S2_contig882:1121..12231696842536.7785628-CDS-E_fasciculatus_S2_contig882:1121..1223Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 1122..1223 -
1696842536.789757-CDS-E_fasciculatus_S2_contig882:1888..22441696842536.789757-CDS-E_fasciculatus_S2_contig882:1888..2244Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 1889..2244 -
1696842536.8006265-CDS-E_fasciculatus_S2_contig882:2887..29871696842536.8006265-CDS-E_fasciculatus_S2_contig882:2887..2987Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 2888..2987 -
1696842536.8142834-CDS-E_fasciculatus_S2_contig882:3340..39001696842536.8142834-CDS-E_fasciculatus_S2_contig882:3340..3900Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 3341..3900 -
1696842536.8274012-CDS-E_fasciculatus_S2_contig882:4091..41631696842536.8274012-CDS-E_fasciculatus_S2_contig882:4091..4163Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 4092..4163 -
1696842536.8384013-CDS-E_fasciculatus_S2_contig882:4796..49501696842536.8384013-CDS-E_fasciculatus_S2_contig882:4796..4950Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 4797..4950 -
1696842536.8547916-CDS-E_fasciculatus_S2_contig882:5144..53441696842536.8547916-CDS-E_fasciculatus_S2_contig882:5144..5344Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig882 5145..5344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig882.16914.1

>prot_E_fasciculatus_S2_contig882.16914.1 ID=prot_E_fasciculatus_S2_contig882.16914.1|Name=mRNA_E_fasciculatus_S2_contig882.16914.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=590bp
MEPSARCCDKQEQQHPAAAAAVAPQEASEESGGVLLYYKYIPLGEEGRVV
VKDWYVEHCRAEGLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAILR
GQGIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGARGAGLSHLE
GGRHVSPQEFHRLLQEEAARKQQAHEVVRGKEGGRVSSGRESVAAAGGGD
GGSGSGGGGVVDSSSPDAPTPAGDRGGDLAEAMPPRRSGHGTVVARAMKE
GASAVSEGCAEAPSPATATSTAMVGKCGRGGGGNKGDEDVLGDGDSAGAN
AGDATVAEEKEAVLLDVRNVYETSIGRFSVEGIETLDPKTRQFSDLPKWV
DENADRLRQGRGRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGG
IERYLQAYPHSTGDPGRAEEAAPPPTAAEEAAGEAAEEAAEAAATEEQRG
VGGGGVQSAGGGGKQSREGFFCGKNFVFDERVSVPESPAGGVVMGRCVLC
ERPWDDYGSRCRCTRCRMLVLVCDACISSALGVREGGAGGPEGGEGFPTP
VPLVPLQEPRGDDSAGGGTDGSASEAGAHPLSSPPPSPTT
back to top

mRNA from alignment at E_fasciculatus_S2_contig882:177..5344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig882.16914.1 ID=mRNA_E_fasciculatus_S2_contig882.16914.1|Name=mRNA_E_fasciculatus_S2_contig882.16914.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5168bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig882:177..5344- (Ectocarpus fasciculatus EfasUO2)
ATGGAACCCAGCGCTCGGTGTTGCGATAAGCAGGAGCAGCAGCATCCCGC AGCAGCAGCAGCAGTAGCACCGCAAGAGGCAAGCGAGGAGAGCGGTGGTG TCCTCCTATACTACAAGTACATCCCCCTCGGCGAAGAGGGGAGGGTCGTC GTCAAGGATTGGTACGTTGAGCACTGCAGGGCCGAGGGGCTTCGAGGCAG GTAAGGCTTGGCGAGAGGGGGGGGGTACGTGTAGGAGGGGTGGGAGAGTA GCGTCACGCAAACTGTACAGCCATGAGAACAACGACTACAGGAGTATCTC CCATCACCACCCATTCATCCTCGCGAACAATGACATCAAAACCGCTGACC ACCACCCCGCGAACCTGCTCCTACATTACCACGGACGAGTGAAGGGTACG CGTGGCCCTGGACGGCGTGAACTGCACCCTGGGAGGAAGCCTGGCAGCTC TACGCAGGCACATCGGCAGCGTCGAGGCACACGCGATCCTGCGAGGGCAA GGTATCGACTTCAAGCTCGCCTCCTCACGAGGGGCGAGAAACTCCCAGGT GCCAAGCCCGTTTGTCCACTGATTTTGGCGCTTTAGTACGATTGGTTTTC TGGTGTATGGAAACTTGCGCCGGGCGTGGTTGCGAGCCTCCCGGAGAGAC CCATCATGGGCGTGTTCTTTTGAGGGTGTCAGCTGGAGCAGGGATTATGT CATGGGGACCGCTCGAGCCGATGTTCGCGTGCTGGGGCAGCAGCAGCAGC TTGTTCGGAAAACGGCGACGTTCCTGCCACCGCCGCTGGGTCGTCGTAGC GATGGCGTTGCCGGCTGTCCCCCCTTTCTCGCTTGTTTCGTGGCCCAATC TTGGTTCAAAGCTGTTGTTCTGGTTCGTGCAGAGTAGTTGCGACCGATAG TACCTGTCTACGCGCTGCTTGTACATGGCCGGTGTGGTGATGGGATAGGT TTTTCTCCTCGTGTCGCAGGCGTACGATGCTGCCCCCCCCCCACCTAGCT CACTCTCGTGAAGTTTCAGCTGTAGGCCTCGTTCTTGTTGACGCCTCCGT CGGAGGTGCCGCGGCTCGGGGGGCTTGCTTTCAATTTTACTTTGGCCATA CCCTTTGCCTTTTTTACTTTGACCGCGGATGCTACTTGCTGCACCTGTTT CGTGGCCGATCCCCGCGTTTGCTTACCGCAGGCAGCCCAGGAGTCCGGCT TCACGACGCTATCTGTGAAGGCGGTGAAGGAGGTGGTCACCCTCGGTGCA CGGGTGAGTTTGTTTCGGTTGTAGCCTTCCAGGGCGCTTGCACAGCCGGA GCGTTTTTCTCGCCGAGGTTCCACCACACGTTACGTGTTGAGCGGTCGAG CGCTTGCCTGCGGTAACAGTTTCCCACAAGCGGTCATGTCATCATTATTT TACATGAGTGTTTTCACTTCTACACACGCACCCTGCGATTCCAGGGAGCG GGCCTGTCCCACCTCGAGGGCGGAAGACACGTGTCCCCGCAGGAGTTCCA CCGCTTGCTGCAGGAGGAGGCCGCTCGGAAGCAGCAAGCCCACGAAGTCG TTCGCGGCAAAGAAGGAGGAAGAGTGTCTTCCGGCAGGGAATCCGTCGCC GCTGCCGGCGGCGGCGACGGCGGCAGCGGCAGCGGCGGCGGCGGTGTTGT TGATTCGTCGTCGCCAGATGCACCTACGCCGGCGGGTGATCGGGGCGGTG ATCTGGCGGAGGCAATGCCACCACGGCGAAGTGGTCACGGGACTGTTGTG GCGAGGGCGATGAAAGAAGGAGCTTCGGCAGTCTCGGAGGGTTGCGCAGA GGCGCCGTCGCCGGCGACAGCGACGTCGACGGCGATGGTAGGAAAATGTG GACGGGGAGGCGGAGGGAACAAGGGGGACGAAGACGTGCTCGGGGACGGC GACAGTGCTGGGGCTAACGCTGGGGATGCGACGGTGGCGGAGGAAAAGGA GGCGGTGCTGCTGGACGTGCGAAACGTGTACGAGACCAGCATCGGGCGTT TCAGGTGCGTGCAAGCCTCTTGGTTGTTGTGTTTGTTCGGGTCTGTTTGA CGTATGTGATGGGTGTGCCGGCAACCCATGATGGAAGCACCTTCGAACAC ATCGTGGAAACACTTGGTAGCTTCTGGGTCGGGAATACAAATAAGATTAA GATTGCGATCCAATCCTTGCTTCCAGAATCGAGCCGCTGAAGTTTCACTG CACACAGGAAACGGAAACGCACGCAAGTCAGTGAGTTGAGAATGGCTTTG CCCCCCTCAATTCGCTCATCCAAGCCTCCCCCGGACGCTCCCCGGGATTT TCTTGCCCTCGCTCTCGTCGCCTATTGGCGCGCCAACATCCAATCCCTAT TTTTCAGTGTGGAAGGGATCGAGACACTAGACCCCAAGACCCGTCAGTTC AGCGACCTGCCCAAGTGGGTGGACGAGAACGCGGACCGTCTAAGGCAAGG CAGGGGTGTAAGTGGGGGGGGGAAGGAGATTCGTTGTTCCCGGGAGTGTT GCGCCGGGCACCGCGTTTCCCTCACAGCAGTGTTCAGATTTGAATCGGAA ACAGCAATGTCGGGTTAAGACCGGTATGTTGTATTTCCTTTGTCTTGAAC GTGGTAGCGTTGTGCGTTTTTTGTTTTTTACTTTGAAGGTCGAGGGGAAA CGTCCAACTCCCCTGCTGCGACCCCCTGCCGTGTTTGCTGTTCGAATGGT TTTGGTCCATGTGCGCCGCTGTTGAGAATCCAACCATTCCCAATGCACCC ATGTTTGAGTAGTTAGACTGTGATGACGGAAGGCATCCGTGTCAGTTGAA CCAGAACGCGTGTTTGAAGACACTGGGCAGACACCGTAATCTTTTTACCC TTACGTGACTAAGTTAGGATACTCTCCTGCCCCACCGCACTGAAATAGCC AAACCAAGATCTATGCTTGTTTTCCCATGTCAATCACCGCGATGCCTCAT GTGTGGATGGGTTACTTCCAGGGGTGGAGGCGGTGCTCATTCCCATATGC GTATTTAATGGCCAATCAGGAAGCGAATACGCTGCCCCCATCCGACCACC ACTACCACCGCCGCCGCCTGGTGCAATTCCCCAACCTCATCAGGGGGAAG CGGGTGCTGATGTACTGCACGGGAGGAGTTCGATGCGAACTGGCGTCTGC GCTTGTCCGGCGACACTGCGACGCCGATGCCACCGGCACGGACGTCTTGC AGCTCTCGGGCGGCATCGAACGCTACCTCCAAGCCTACCCGCATAGCACG GGAGATCCGGGGCGTGCTGAGGAAGCAGCACCACCACCAACAGCAGCAGA GGAAGCAGCAGGTGAAGCAGCAGAGGAAGCAGCAGAAGCAGCAGCAACAG AGGAGCAGCGGGGGGTCGGCGGGGGGGGGGTTCAGAGCGCGGGGGGAGGG GGGAAGCAGTCGCGGGAGGGGTTCTTCTGTGGCAAGAACTTCGTCTTTGA CGAAAGGTGCGTCCTTCCTCAGACAACGTTTTGCCGTGTGGTACTTGGTG CGTGAGTCGGCGTGGTATATTTCGCTGACGGGTTTGTTGGCGCCTTTAAC CGCAGACCCTTGTCGTTGTTTAGCGCCGGGGATCTGTTTTGAGAGTAGCA TTGGAATTTTCTTGAAAGCATTTTGCTGTTCGACGCAACTGTTATATTAA TAGCAGGTGAAGCCCACGGTTGACAGCATCAACAACAACAACAACAACAA CAACAACGACAAGGCGATCATATCATACCATACCGAAGTTCTTCCGGTGA TGCACACACAAGTCGTTTGTTTTCCGCTGAACAGTCACTTGGATTAAAAA AAACTGGCGTACGCCCATACCCAATGCCCCACACACGCGAATACCTATTT GTTCCTGCGCCCAGCCCTCAAGACCGTTTGAACCATGACACGGTAGAGCC GCCCGCCTGTGTCTTTGTATCGTGTGTCGTCACGTCGTGTTTTCTTGTTC ACCCAGGAACCCTTCCACTCTCTGCATACATACAGCGTAAAGTGTTGCCA GCCGCGCTGCCTCCTTCATCACAGTAAGATTCTGTCTTGTCTTTGTCTTT GCGCTTGTTCGTGTCCTCACTCGCCCTATCTCTCTCTCCTTGTGGTCGTC ATGATATACCGTTGTGTGCAGGGTATCGGTGCCGGAATCACCGGCGGGCG GGGTGGTGATGGGGCGCTGCGTGCTGTGTGAGCGGCCTTGGGACGACTAC GGTAGCCGCTGCAGATGCACAAGGCAGGTTCTGCTGTGTTTGCGTGTCTT CATTATTTTTATCAACAGCGCGAACAGGCTAACTGATGAAAAGACGTCAG TCTCAGAAGAGTTTTGAACGGACGACACTTCTAAAGGTCATGATCTGAGG TGGGGTAAGCAATGAGTGCGTTTTGCGCGCCCTCTATTCTGGGAGCCAGT CTACACGCCTTTCCGTGTATGTTTGGCGCACCAGCCGGCTTCTGCAGTTC GTGTTCAACGCCAAGGGGAGAAGAGTAAGCGGAAATCGTACCACTAATCT TGCCCTACCCAACAAACGAGTCTCATCCACGGATAAGAGTCCGAGATAGA TTGACAATGAGTTCATAGTGTTGTAAGATGACCAACTTGTATTTCTACTA GTATTTCGCTCGAGAGAGTAGGAGTTGTATGCCGACAAGAAGACGCGCTA TGAAACCGACGTCGATTATGCGGCGGAAATGTCGAAATAACTGAGCGCTT TTTACATACACATGAGCCGTTATGAGCGGATGGCGACAACCTCCAAAACC ACACTGCTCTGTAACGATAGTCCGACGGAACATCGCACCCGCCCAACGAC CAGCGTAATTCATGGTGTACGCCAGGTGGAGCGTCTTCTCTGCACGACAG GAGTGTAACAGGACGTGACACGTCCATTTTTGTTCACGTCGCCCACCAAA CCGCTGCTGCTGTTGTTGCACGTGGTCGTGTGGTGCTGGCAGGTGTCGAA TGCTTGTCCTCGTGTGCGACGCTTGCATCTCGTCCGCGCTCGGCGTACGG GAGGGAGGGGCTGGAGGACCGGAAGGAGGAGAGGGGTTCCCGACGCCGGT GCCGTTGGTGCCGTTGCAGGAACCGCGCGGAGACGACAGCGCCGGCGGCG GCACTGACGGTTCTGCTTCTGAAGCGGGGGCGCACCCGCTTTCTTCTCCA CCACCATCGCCAACAACA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig882:177..5344-

>mRNA_E_fasciculatus_S2_contig882.16914.1 ID=mRNA_E_fasciculatus_S2_contig882.16914.1|Name=mRNA_E_fasciculatus_S2_contig882.16914.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1770bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig882:177..5344- (Ectocarpus fasciculatus EfasUO2)
ATGGAACCCAGCGCTCGGTGTTGCGATAAGCAGGAGCAGCAGCATCCCGC
AGCAGCAGCAGCAGTAGCACCGCAAGAGGCAAGCGAGGAGAGCGGTGGTG
TCCTCCTATACTACAAGTACATCCCCCTCGGCGAAGAGGGGAGGGTCGTC
GTCAAGGATTGGTACGTTGAGCACTGCAGGGCCGAGGGGCTTCGAGGCAG
GGTACGCGTGGCCCTGGACGGCGTGAACTGCACCCTGGGAGGAAGCCTGG
CAGCTCTACGCAGGCACATCGGCAGCGTCGAGGCACACGCGATCCTGCGA
GGGCAAGGTATCGACTTCAAGCTCGCCTCCTCACGAGGGGCGAGAAACTC
CCAGGCAGCCCAGGAGTCCGGCTTCACGACGCTATCTGTGAAGGCGGTGA
AGGAGGTGGTCACCCTCGGTGCACGGGGAGCGGGCCTGTCCCACCTCGAG
GGCGGAAGACACGTGTCCCCGCAGGAGTTCCACCGCTTGCTGCAGGAGGA
GGCCGCTCGGAAGCAGCAAGCCCACGAAGTCGTTCGCGGCAAAGAAGGAG
GAAGAGTGTCTTCCGGCAGGGAATCCGTCGCCGCTGCCGGCGGCGGCGAC
GGCGGCAGCGGCAGCGGCGGCGGCGGTGTTGTTGATTCGTCGTCGCCAGA
TGCACCTACGCCGGCGGGTGATCGGGGCGGTGATCTGGCGGAGGCAATGC
CACCACGGCGAAGTGGTCACGGGACTGTTGTGGCGAGGGCGATGAAAGAA
GGAGCTTCGGCAGTCTCGGAGGGTTGCGCAGAGGCGCCGTCGCCGGCGAC
AGCGACGTCGACGGCGATGGTAGGAAAATGTGGACGGGGAGGCGGAGGGA
ACAAGGGGGACGAAGACGTGCTCGGGGACGGCGACAGTGCTGGGGCTAAC
GCTGGGGATGCGACGGTGGCGGAGGAAAAGGAGGCGGTGCTGCTGGACGT
GCGAAACGTGTACGAGACCAGCATCGGGCGTTTCAGTGTGGAAGGGATCG
AGACACTAGACCCCAAGACCCGTCAGTTCAGCGACCTGCCCAAGTGGGTG
GACGAGAACGCGGACCGTCTAAGGCAAGGCAGGGGTCGGGTGCTGATGTA
CTGCACGGGAGGAGTTCGATGCGAACTGGCGTCTGCGCTTGTCCGGCGAC
ACTGCGACGCCGATGCCACCGGCACGGACGTCTTGCAGCTCTCGGGCGGC
ATCGAACGCTACCTCCAAGCCTACCCGCATAGCACGGGAGATCCGGGGCG
TGCTGAGGAAGCAGCACCACCACCAACAGCAGCAGAGGAAGCAGCAGGTG
AAGCAGCAGAGGAAGCAGCAGAAGCAGCAGCAACAGAGGAGCAGCGGGGG
GTCGGCGGGGGGGGGGTTCAGAGCGCGGGGGGAGGGGGGAAGCAGTCGCG
GGAGGGGTTCTTCTGTGGCAAGAACTTCGTCTTTGACGAAAGGGTATCGG
TGCCGGAATCACCGGCGGGCGGGGTGGTGATGGGGCGCTGCGTGCTGTGT
GAGCGGCCTTGGGACGACTACGGTAGCCGCTGCAGATGCACAAGGTGTCG
AATGCTTGTCCTCGTGTGCGACGCTTGCATCTCGTCCGCGCTCGGCGTAC
GGGAGGGAGGGGCTGGAGGACCGGAAGGAGGAGAGGGGTTCCCGACGCCG
GTGCCGTTGGTGCCGTTGCAGGAACCGCGCGGAGACGACAGCGCCGGCGG
CGGCACTGACGGTTCTGCTTCTGAAGCGGGGGCGCACCCGCTTTCTTCTC
CACCACCATCGCCAACAACA
back to top