mRNA_E_fasciculatus_S2_contig8806.16900.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8806.16900.1
Unique NamemRNA_E_fasciculatus_S2_contig8806.16900.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8806.16900.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.940e-47
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 2 
Query:    2 PGSAFIIRKKPGRKPGKMNKASFNSPEAKRARVLDSMVSAAERSNLLQEAGAEHMRRLELADAE-RLAMEKEEHALRMAIGKSALALLSKMAGEPPPQLSXXXXXXXXXXXXXPMHEPGSVG 364
            PG+ FIIRKKPGRK GK+NK+SFNSPEAKRARVLDS+VSAAERS LLQEAGAEHMRRL LADAE RL MEKEEHALRMAIGKSALALLSKMAGEPPPQLS XXXXXXXXXXX   HEPGSVG
Sbjct:  279 PGARFIIRKKPGRKLGKLNKSSFNSPEAKRARVLDSIVSAAERSILLQEAGAEHMRRLVLADAEQRLTMEKEEHALRMAIGKSALALLSKMAGEPPPQLSPXXXXXXXXXXX--THEPGSVG 398
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BLAST of mRNA_E_fasciculatus_S2_contig8806.16900.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY9_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.650e-45
Identity = 97/104 (93.27%), Postives = 98/104 (94.23%), Query Frame = 2 
Query:   53 MNKASFNSPEAKRARVLDSMVSAAERSNLLQEAGAEHMRRLELADAERLAMEKEEHALRMAIGKSALALLSKMAGEPPPQLSXXXXXXXXXXXXXPMHEPGSVG 364
            MNK+ FNSPEAKRARVLDSMVSAAERSNLLQEAGAEHMRRLELADAERLAMEKEEHALRMAIGKSALALLSKMAGEPPPQLS  XXXXXXXXXX   HEPGSVG
Sbjct:    1 MNKSYFNSPEAKRARVLDSMVSAAERSNLLQEAGAEHMRRLELADAERLAMEKEEHALRMAIGKSALALLSKMAGEPPPQLSPPXXXXXXXXXX--THEPGSVG 102
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8806.16900.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.940e-4788.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.650e-4593.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8806contigE_fasciculatus_S2_contig8806:3426..4041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size379
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_006070.1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842535.5700727-UTR-E_fasciculatus_S2_contig8806:3425..34771696842535.5700727-UTR-E_fasciculatus_S2_contig8806:3425..3477Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8806 3426..3477 +
1696842535.6184106-UTR-E_fasciculatus_S2_contig8806:4029..40411696842535.6184106-UTR-E_fasciculatus_S2_contig8806:4029..4041Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8806 4030..4041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842535.5822082-CDS-E_fasciculatus_S2_contig8806:3477..36181696842535.5822082-CDS-E_fasciculatus_S2_contig8806:3477..3618Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8806 3478..3618 +
1696842535.5967479-CDS-E_fasciculatus_S2_contig8806:3855..40291696842535.5967479-CDS-E_fasciculatus_S2_contig8806:3855..4029Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8806 3856..4029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8806.16900.1prot_E_fasciculatus_S2_contig8806.16900.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8806 3478..4029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8806.16900.1

>prot_E_fasciculatus_S2_contig8806.16900.1 ID=prot_E_fasciculatus_S2_contig8806.16900.1|Name=mRNA_E_fasciculatus_S2_contig8806.16900.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
MNKASFNSPEAKRARVLDSMVSAAERSNLLQEAGAEHMRRLELADAERLA
MEKEEHALRMAIGKSALALLSKMAGEPPPQLSPPLAAAPPAPSPPPMHEP
GSVG*
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mRNA from alignment at E_fasciculatus_S2_contig8806:3426..4041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8806.16900.1 ID=mRNA_E_fasciculatus_S2_contig8806.16900.1|Name=mRNA_E_fasciculatus_S2_contig8806.16900.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=616bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8806:3426..4041+ (Ectocarpus fasciculatus EfasUO2)
CCCCGGGAGCGCGTTCATCATCAGGAAAAAGCCGGGCCGAAAGCCGGGCA
AGATGAACAAGGCGTCCTTCAACTCGCCGGAGGCGAAGCGGGCGCGCGTT
CTTGACTCGATGGTGTCGGCGGCGGAGCGGTCGAACTTGCTGCAGGAGGC
CGGCGCGGAGCACATGCGCAGGCTCGAGCTTGCAGACGCTGAGGTTTGTG
TTTGTGTGTGTTTGGTCGATAAGTATATTCAGACGTCGTTTTGTCGGTGT
AGCCCGTTCTATCCTATCCGCTGTGCGTCAATCCAAGCGTTTTTTGGGCC
TGTGTTTTTGTCTTCTTCTTTGTGTTCACCTGGTGCACCAATACCTTACC
TGTGTTGGTTAAGTGAAGATTAAGATTGCCCTCCCCGCCCTCGTCGTTGC
TTTGGCTCTCTGCCGCTGCTGCTGCTGCAGCGGTTGGCAATGGAGAAAGA
AGAGCATGCTCTGCGCATGGCAATCGGCAAGTCGGCTCTGGCGCTGCTGA
GCAAGATGGCCGGAGAGCCGCCGCCTCAGCTGTCTCCGCCACTAGCAGCA
GCACCACCGGCGCCGTCGCCACCACCGATGCACGAGCCAGGGTCTGTGGG
CTGAAAGACCTTTGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8806:3426..4041+

>mRNA_E_fasciculatus_S2_contig8806.16900.1 ID=mRNA_E_fasciculatus_S2_contig8806.16900.1|Name=mRNA_E_fasciculatus_S2_contig8806.16900.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8806:3426..4041+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAAGGCGTCCTTCAACTCGCCGGAGGCGAAGCGGGCGCGCGTTCT
TGACTCGATGGTGTCGGCGGCGGAGCGGTCGAACTTGCTGCAGGAGGCCG
GCGCGGAGCACATGCGCAGGCTCGAGCTTGCAGACGCTGAGCGGTTGGCA
ATGGAGAAAGAAGAGCATGCTCTGCGCATGGCAATCGGCAAGTCGGCTCT
GGCGCTGCTGAGCAAGATGGCCGGAGAGCCGCCGCCTCAGCTGTCTCCGC
CACTAGCAGCAGCACCACCGGCGCCGTCGCCACCACCGATGCACGAGCCA
GGGTCTGTGGGCTGA
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