mRNA_E_fasciculatus_S2_contig880.16897.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K1_9PHAE) HSP 1 Score: 224 bits (572), Expect = 7.900e-66 Identity = 117/147 (79.59%), Postives = 126/147 (85.71%), Query Frame = 1
Query: 154 MACAGSVPAPPSAMQGSQESKRYQACATPSKRETRQMSRKSAALLPFKRVSAGRSLGGRRAMLALVSAVHMDLVEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRHH-APRVF 591
MAC GSV APP A+Q SQ SKR+QAC TP K ETRQ+SR AAL PF R S GRSLGGRRA+LALVSAVH+DLVEGKWLIEFP FRC+WNDLPH +QFAILFLMLGVLYGVNRLFDKAD AM TRL+CATA LLNERRHH APR+F
Sbjct: 1 MACMGSVSAPPGAIQTSQGSKRHQACKTPLKSETRQLSRNKAALRPFVRSSTGRSLGGRRAILALVSAVHVDLVEGKWLIEFPPRFRCIWNDLPHGLQFAILFLMLGVLYGVNRLFDKADQAMHTRLTCATARLLNERRHHHAPRLF 147
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE) HSP 1 Score: 209 bits (531), Expect = 5.130e-60 Identity = 109/143 (76.22%), Postives = 120/143 (83.92%), Query Frame = 1
Query: 154 MACAGSVPAPPSAMQGSQESKRYQACATPSKRETRQMSRKSAALLPFKRVSAGRSLGGRRAMLALVSAVHMDLVEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERR-HHA 579
MAC GSV +PP A+QGSQ+S+RYQAC SKRE R MSRK AAL R SAG LGGRRAMLAL+S H+D+VEGKWLIEFPSGFRCMWNDLPH +QFAIL LMLG+LYGVNRLFDKAD A+ TRL+CATAGLLNERR HHA
Sbjct: 1 MACMGSVSSPPGAIQGSQQSERYQACEASSKREIRHMSRKKAALHTLVRSSAG--LGGRRAMLALISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERRLHHA 141
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ2_9PHAE) HSP 1 Score: 190 bits (482), Expect = 3.320e-52 Identity = 115/202 (56.93%), Postives = 127/202 (62.87%), Query Frame = 1
Query: 154 MACAGSVPAPPSAMQGSQESKRYQACATPSKRETRQMSRKSAALLPFKRVSAGRSLGG--RRAMLALVSAVHMDLVEGK---------------------------------------------------W---LIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRHH-APRV 588
MAC GSVP PPSA SQ+S+ YQAC SKRETR+MSR+ AAL PF R SAGRSLGG RRAMLALVSAVH+DLVEGK W LIEFPSG RCMWN+LPH +QFAILFLMLG+LYGVNRLFDKAD AM TR++CATAGLL ERRHH AP++
Sbjct: 1 MACMGSVPFPPSAAHSSQQSESYQACKASSKRETRRMSREKAALRPFVRSSAGRSLGGGGRRAMLALVSAVHVDLVEGKCESSVASVAPTIVVKQEFLGGHGEARTHSRGLTVHGMPSGSCPVPLLIFTPWHAGLIEFPSGVRCMWNELPHGLQFAILFLMLGILYGVNRLFDKADEAMYTRVTCATAGLLRERRHHHAPQM 202
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F6_ECTSI) HSP 1 Score: 134 bits (338), Expect = 1.010e-33 Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 1
Query: 343 ALVSAVHMDLVEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRHH-APRVF 591
ALVSA+ +DLVEGK LIE PSG RCMWNDLPH +QFAILFLMLG+LYGVNRLFDKAD AM +RL+CATA LL ERRHH AP++
Sbjct: 16 ALVSAIQVDLVEGKRLIELPSGVRCMWNDLPHGLQFAILFLMLGILYGVNRLFDKADEAMYSRLTCATAELLRERRHHDAPQIL 99
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C9_ECTSI) HSP 1 Score: 117 bits (294), Expect = 1.310e-27 Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 304 SAGRSLGGRRAMLALVS-AVHMDLVEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERR-HHAPRVF 591
++G S GRR + + D + G LIEFP GFRC+WNDLPH +QF IL LMLG+LYGVNRLFDKAD A+ TRL+CAT+GLLNE+R HHAPR+
Sbjct: 16 ASGASRAGRRWWFPRANFTITTDRLTG--LIEFPPGFRCIWNDLPHGLQFTILLLMLGILYGVNRLFDKADEAVYTRLACATSGLLNEKRNHHAPRLL 111
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU53_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.310e-26 Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 304 SAGRSLGGRRA-MLALVSAVHMDL--VEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRHH-APR 585
S+G GGR +LAL A+ + L VE K L+E PSGFRC+WNDLPH VQF +F+ML +LYGVNR FDKAD AMSTRLS ATA LL+ERRHH APR
Sbjct: 78 SSGSRGGGRVVGLLALAFALPIKLCNVESKMLVELPSGFRCIWNDLPHIVQFVAIFMMLVLLYGVNRAFDKADDAMSTRLSRATAALLHERRHHHAPR 175
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL3_9PHAE) HSP 1 Score: 105 bits (262), Expect = 3.050e-22 Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 337 MLALVSAVHMDLVEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRHHAP 582
+LAL SA+ + VE L+E PSGFRC+WN+LPH VQ A + LM+ ++YGV+R+FD+AD AMS RLS ATA L+ERR H P
Sbjct: 67 ILALASAIKLGNVESSMLVELPSGFRCIWNNLPHLVQIAAILLMVVLMYGVSRVFDRADDAMSARLSSATAAFLHERRQHYP 148
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU8_9PHAE) HSP 1 Score: 100 bits (249), Expect = 7.010e-21 Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 400 PSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRHH---APRVF 591
P+G RC+WNDLPH VQF +FLML +LYGV R+FDKAD AMSTRLSCATA L+ERRHH PRV
Sbjct: 53 PAGSRCIWNDLPHIVQFVAIFLMLVLLYGVKRVFDKADKAMSTRLSCATAAFLHERRHHHAPLPRVL 119
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.550e-20 Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = 1
Query: 184 PSAMQGSQESKRYQACATPSKRETRQMSRKSAALLPFKRVSAGRSLGGRRAMLALVSAVHMDLVEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRH 573
PSA Q S+ KR Q+ + KRE R+ K + G ++ RR +LA ++A++ LV+G L++ PSGF+C W +L H QFAILFLM+GV+Y +NRLF++ D M RLSCAT ++E RH
Sbjct: 87 PSATQPSRHFKRCQSSSL--KREARRSIGKR---------TGGLTMMSRRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRH 205
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.940e-19 Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 346 LVSAVHMDLVEGKWLIEFPSGFRCMWNDLPHFVQFAILFLMLGVLYGVNRLFDKADVAMSTRLSCATAGLLNERRH 573
++SA + +VE L+EFPS FRCMWNDLPH QFAI+FLML +L+GV+R+F K D A RLS A +NERRH
Sbjct: 27 VMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRH 102 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig880.16897.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig880.16897.1 >prot_E_fasciculatus_S2_contig880.16897.1 ID=prot_E_fasciculatus_S2_contig880.16897.1|Name=mRNA_E_fasciculatus_S2_contig880.16897.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=184bp MTAVVTPVRWVQGVPMKFERASSLLWWLLRVGVESVLMACAGSVPAPPSAback to top mRNA from alignment at E_fasciculatus_S2_contig880:497..7386+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig880.16897.1 ID=mRNA_E_fasciculatus_S2_contig880.16897.1|Name=mRNA_E_fasciculatus_S2_contig880.16897.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6890bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig880:497..7386+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig880:497..7386+ >mRNA_E_fasciculatus_S2_contig880.16897.1 ID=mRNA_E_fasciculatus_S2_contig880.16897.1|Name=mRNA_E_fasciculatus_S2_contig880.16897.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig880:497..7386+ (Ectocarpus fasciculatus EfasUO2)back to top |