mRNA_E_fasciculatus_S2_contig88.16895.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: Imm (upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 417 bits (1073), Expect = 5.010e-143 Identity = 201/255 (78.82%), Postives = 230/255 (90.20%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTTDGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTASGYKVMVTDASDESDMGCSDAFTLVAADDVPDALEAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSSMSMSMRF 765
MARTAFAALAFGMLGAANALE+VSP +G+ V A SAYTVEWTG T GR+D+DLYYCGS+CM+ ECG+WVTALCPYGD+GCPDT+GDYD++MPEPMDGT+SGYKVMVTD+SDESD GCS FTL+A+ + PDA + GAYV VTSPSDGDTAMAGGEYTVEFDYD+G G + NRFAIDLYS GGSGDCGTY+T++CDK SIGCKDSQGDYDV+IPSGTESGMYSIRVGVFE++ VYGCSDSFE+VG +S MS+RF
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGES---MSVRF 252
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: GPI-anchored (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 364 bits (934), Expect = 6.440e-122 Identity = 181/255 (70.98%), Postives = 214/255 (83.92%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTTDGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTASGYKVMVTDASDESDMGCSDAFTLVAADDVPDALEAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSSMSMSMRF 765
MARTAFAA+AFGML AANALE+VSP G V A AYTVEWTGTT GRF++DLYYC S CMD CG+WVTALCPYG +GCPD+ GDYDI+MPEPM GT+SGYKVMV +A DESDMGCSD FTL+A++D P+A E G + VTSPSDGDTAMAG YTVE+DY++G G +T+RFA+DLY VGG+GDCGTY+T++CD+ SIGC DSQGDYDV IPS T +GMYSIRVGVF++E +Y CSD+FEV SD M++SMRF
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDD-MTISMRF 254
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 358 bits (918), Expect = 1.710e-119 Identity = 176/252 (69.84%), Postives = 210/252 (83.33%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTTDGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTASGYKVMVTDASDESDMGCSDAFTLVAADDVPDALEAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVG-GSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSSMSM 753
MARTAFAALAFGMLGAANALE+VSP +G V A YTVEWTGT+D RF++DLYYCGS CM+ ECG+WVTALCPYG +GCPDT+GDYDI+MPEPM GT+SGYKV+VTD++DES MGCS FTLVA+ D P A E G + VTSPSDGDTAMAGG YTVE+DY++G G +T+RFAIDLYS G G+GDCGTY+ ++CDK SIGC DSQGDYDV IPS T +GMYS+RVGVF ++ ++ CS+ FE+V + MSM
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSM 252
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 342 bits (877), Expect = 2.650e-113 Identity = 167/251 (66.53%), Postives = 197/251 (78.49%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTTDGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTASGYKVMVTDASDESDMGCSDAFTLVAADDVPDALEAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSSMSM 753
MARTAFAALAFGMLGA NALE+ SP +G+ + A S+ TVEWTGT+ GRFD+DLYYCGS+CM+ ECG+WVTALCPYGD+GCPDT+GDYD++MPEPMDGT+SGYKVMVTD+SDESDMGCS FTLVA+ FD+D+G G + NRF+IDLY GGSGDCGTY+TS+CDK SIGCKDSQGDYDV+IPS TESGMYSIRVGVFE+ V+GCSDSFE++G +SSMS+
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMSV 251
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 328 bits (841), Expect = 8.760e-108 Identity = 167/258 (64.73%), Postives = 202/258 (78.29%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGT-TDGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTA-SGYKVMVTDASDESDMGCSDAFTLVAADDVPDALEAGA-YVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSSMSMSMRF 765
M RT F ALA GMLG A+ALE+V+P +G+ V + AYTVEW+GT ++ RF++DLYYC SMCM+ ECGEWVTALCPYG++GCPD +GDYDI+MPEPM GT+ SGYKV V D DE CSD F L+A D P A +AG YV VTSPS GD+A AG EYTVEFDYD+G G + RFAIDLY+ GSGDCGT++ ++CDK +IGCKDS GDYDV IP E+GMY+IRVG FE+E+VYGCSD FE++G+D S SMS RF
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDS-SMSYRF 258
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: EsV-1-163 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 327 bits (837), Expect = 3.290e-107 Identity = 161/248 (64.92%), Postives = 194/248 (78.23%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTTDGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTA-SGYKVMVTDASDESDMGCSDAFTLVAADDVPDA-LEAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSD 738
MART F ALA MLGAANALE+V+P + V A YTVEWTG GRF++DLY+CGSMCM+ CG+WVTALCPYG+EGCPD +GDYDI+MPEPM G + SGYKV V D SDE M CSDAF L+A++D PDA E+G ++ VTSP++GD+A AG EYTVEFDYD+G G +RF+IDLY G GDCGTY+TS+CDK SIGCKDS GDYDV IP+ TE+G Y IRVG FE+E +YGCS +F ++G D
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 313 bits (801), Expect = 1.720e-101 Identity = 154/239 (64.44%), Postives = 190/239 (79.50%), Query Frame = 1
Query: 37 MLGAANALEMVSPMSGEEVAAGSAYTVEWTGT-TDGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTA-SGYKVMVTDASDESDMGCSDAFTLVAADDVPDALEAGA-YVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSS 744
MLGAA+ALE+V+P G+ V A AYTVEWTGT ++ R+++DLYYCGSMCM+ ECG+WVTALCPYG++GCPD +GDYDI+MPEPM GT+ SGYKV V D D+ CSD F L+A + P A +AG YV VTSPS GD+A AG EYTVEFDYD+G G + RFAIDLYS GSGDCGT++ ++CDK +IGCKDS GDYDV IP E+GMY+IRVG FE+++VYGCSD FE++G+D S
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDS 239
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 297 bits (761), Expect = 1.420e-95 Identity = 151/251 (60.16%), Postives = 184/251 (73.31%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTT-DGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTA-SGYKVMVTDASDESDMGCSDAFTLVAADDVPDAL-EAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSS 744
M RT F ALA GMLGAANAL++ +P G V A YTVEWTGT+ D RF++DLYYCGSMCM+ +CG+WVTALCPYG++GCPD +GDYDI+MPEPM GT+ SGYKV V D DE D CSD F L+A+ + P E G + VTSP+ GD A GEYTVEFDYD+G G + +RFAIDLY G GDCGTY+ S+CDK +IGCKDS GDYDV IP T++G Y IRV FE++++Y CS +F + D S
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDS 251
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 259 bits (662), Expect = 9.890e-82 Identity = 124/192 (64.58%), Postives = 157/192 (81.77%), Query Frame = 1
Query: 181 MDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTASGYKVMVTDASDESDMGCSDAFTLVAADDVPDALEAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVG-GSGDCGTYITSVCDKESIGCKDSQGDYDVIIPSGTESGMYSIRVGVFENEAVYGCSDSFEVVGSDSSMSM 753
M+ +CG+WVTALCPYG +GCPDT+GDYDI+MPEPMDGT+SGYK+MVTD++DES MGCS FTLVA+ D P A E G + V SPSDGD AMAG YTVE+DY++G G + +RFAIDLY+ G G+GDCGTY+ ++CDK +IGC DSQGDYDV IPS T +GMYS+RVGVF +E ++ CS++FE+V + +SM
Sbjct: 1 MEDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDSTDLSM 192
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Match: Imm (downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 260 bits (665), Expect = 1.810e-81 Identity = 137/232 (59.05%), Postives = 165/232 (71.12%), Query Frame = 1
Query: 1 MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTT-DGRFDVDLYYCGSMCMDGECGEWVTALCPYGDEGCPDTKGDYDIMMPEPMDGTA-SGYKVMVTDASDESDMGCSDAFTLVAADDVPDAL-EAGAYVMVTSPSDGDTAMAGGEYTVEFDYDDGSGGTTNRFAIDLYSVGGSGDCGTYITSVCDKESIGCKDS----QGDYDVIIPSGTESGMYSIRV 675
MART F ALA GMLGAANAL++ +P G V A YTVEWTGT+ D RF++DLYYCGSMCM+ +CG+WVTALCPYG++GCPD +GDYDI+MPEPM GT+ SGYKV V D DE D CSD F L+A+ + P E G + VTSP+ GD A GEYTVEFDYD+G G +RFAIDLY G GDCGTY+ S+CDK +IGCKDS +G + V G G +S+ V
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLV 233 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig88.16895.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig88.16895.1 >prot_E_fasciculatus_S2_contig88.16895.1 ID=prot_E_fasciculatus_S2_contig88.16895.1|Name=mRNA_E_fasciculatus_S2_contig88.16895.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=256bp MARTAFAALAFGMLGAANALEMVSPMSGEEVAAGSAYTVEWTGTTDGRFDback to top mRNA from alignment at E_fasciculatus_S2_contig88:39983..44882+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig88.16895.1 ID=mRNA_E_fasciculatus_S2_contig88.16895.1|Name=mRNA_E_fasciculatus_S2_contig88.16895.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4900bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig88:39983..44882+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig88:39983..44882+ >mRNA_E_fasciculatus_S2_contig88.16895.1 ID=mRNA_E_fasciculatus_S2_contig88.16895.1|Name=mRNA_E_fasciculatus_S2_contig88.16895.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=768bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig88:39983..44882+ (Ectocarpus fasciculatus EfasUO2)back to top |