mRNA_E_fasciculatus_S2_contig8798.16892.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8798.16892.1
Unique NamemRNA_E_fasciculatus_S2_contig8798.16892.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8798.16892.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU8_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 4.190e-106
Identity = 172/191 (90.05%), Postives = 180/191 (94.24%), Query Frame = 2 
Query:    2 ENGQGGGQGAMKLSEMFHPEREKQAPFFLSQQGRAQLASGQRACKPWDVAYVGDPMYRPRRAWELKALIALWVGLSELVNSRWLGWSTP--EDGEGSRGSGTDSVFDDEGSGKAIAQGKDFQRRIWREVRWAGLPCRVNLRPLADVRATVGLGVALYVLWLAYSLSSVCGACVTVILVALVVRLSTMTMDY 568
            ENGQGG QG MKLSEMFHPEREKQAP+FLSQQGR QLASGQRACKPWDVAYVGDPMYRPRRAWE++ALIALWVGLSELVNSRWLGWSTP  E G+ SRGSG+DSVFDDEGSGKAI QGKDFQRR+WREVRWAGLPCRVNLRPLADVRATVGLGVALYVLWLAY LSSVCGACVTV+L ALVVRLSTMT +Y
Sbjct:  693 ENGQGGAQGTMKLSEMFHPEREKQAPYFLSQQGRTQLASGQRACKPWDVAYVGDPMYRPRRAWEMEALIALWVGLSELVNSRWLGWSTPDREGGDSSRGSGSDSVFDDEGSGKAIVQGKDFQRRVWREVRWAGLPCRVNLRPLADVRATVGLGVALYVLWLAYRLSSVCGACVTVVLGALVVRLSTMTTEY 883
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8798.16892.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.190e-10690.05protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8798contigE_fasciculatus_S2_contig8798:7..4277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1601
Hectar predicted targeting categoryother localisation
Exons4
Cds size540
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8798.16892.1prot_E_fasciculatus_S2_contig8798.16892.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8798 38..3247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842534.8413086-UTR-E_fasciculatus_S2_contig8798:6..371696842534.8413086-UTR-E_fasciculatus_S2_contig8798:6..37Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8798 7..37 +
1696842534.896076-UTR-E_fasciculatus_S2_contig8798:3247..42771696842534.896076-UTR-E_fasciculatus_S2_contig8798:3247..4277Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8798 3248..4277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842534.852659-CDS-E_fasciculatus_S2_contig8798:37..1411696842534.852659-CDS-E_fasciculatus_S2_contig8798:37..141Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8798 38..141 +
1696842534.8633592-CDS-E_fasciculatus_S2_contig8798:1497..16301696842534.8633592-CDS-E_fasciculatus_S2_contig8798:1497..1630Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8798 1498..1630 +
1696842534.874319-CDS-E_fasciculatus_S2_contig8798:1817..19881696842534.874319-CDS-E_fasciculatus_S2_contig8798:1817..1988Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8798 1818..1988 +
1696842534.8865452-CDS-E_fasciculatus_S2_contig8798:3115..32471696842534.8865452-CDS-E_fasciculatus_S2_contig8798:3115..3247Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8798 3116..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8798.16892.1

>prot_E_fasciculatus_S2_contig8798.16892.1 ID=prot_E_fasciculatus_S2_contig8798.16892.1|Name=mRNA_E_fasciculatus_S2_contig8798.16892.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=180bp
MKLSEMFHPEREKQAPFFLSQQGRAQLASGQRACKPWDVAYVGDPMYRPR
RAWELKALIALWVGLSELVNSRWLGWSTPEDGEGSRGSGTDSVFDDEGSG
KAIAQGKDFQRRIWREVRWAGLPCRVNLRPLADVRATVGLGVALYVLWLA
YSLSSVCGACVTVILVALVVRLSTMTMDY*
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mRNA from alignment at E_fasciculatus_S2_contig8798:7..4277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8798.16892.1 ID=mRNA_E_fasciculatus_S2_contig8798.16892.1|Name=mRNA_E_fasciculatus_S2_contig8798.16892.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4271bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8798:7..4277+ (Ectocarpus fasciculatus EfasUO2)
GGAGAATGGCCAGGGGGGGGGGCAGGGCGCGATGAAGCTGTCCGAGATGT
TCCACCCCGAGAGAGAAAAACAGGCACCGTTTTTCCTGTCGCAACAAGGG
AGAGCACAGCTAGCGTCCGGACAGAGGGCGTGCAAGTGAGTGAAGGGCGG
CTACTGCTGCCGTTGTTGCTGTTGCTGTTGTTGCTGTTGCCGTCATTTGG
GTGCTGGCTGTTGCTGCTAGCGCTGTTTTCCTTTTCGCCGTAAACTCAGC
ATCCATGGACAATACTTGTGGTGACAGCGTTTTTTTAAACCGGACGTGAC
CTATCCTGCTGGTTTCCATTCCATCCTAGTTCATTCACTTTTTGTTTCCC
GGGTGTCTTTTTTGTGCATGTGTGTCTTGCATGTTGTGCTGGACAGGTGC
GGCCCGTTACCCGCAGAACCTAGACTCACTTACAGTATCGTGGGAAGGAG
TTCCGCGTACATGCTGCGTGTAATTCACAATTTTTCGTGTCTCGAGGATG
CTCTTCATGGTGCACGATTGCCAGATTCCGTAGTACCAAGCGGCCACGAC
CCAACGTCCGGCACAAGGAACGGGTTTGAATATTCCGATTGCTCGTGCTT
TTCAAGCTGATCTTTTACTTTGGTCACACACTATCGTCTTTTCATTTTTT
TAAGATTCACACGCATACACACAAGCCACCCCCGGTGGTGGCACGCGTCA
AACAATCTAACGATGCTGCGATACCGTGCGGCGGTCCAATGTTCTTCTCA
TATCACTCCTCACTGATGTGCTCCACTCGTTCCTCCCTTGTCACTCCTTA
CCCCTTCGCTATTCACTCTCGTCATTCGTGACTCCTCGTCACTTCTCATT
CGCCAGTTCCATCACTCGTTACGCCTCACGGTTGCCATTCCTAACTCCTA
CTCACTTCCTCTTATTTCACTTGGCGCTCATGTGTCCTACTCGTTACTCA
TCACTTTGTCACTCCCTACCCCTCCGTCGCTTCTCGCTTCTCACCCTCGC
CCGCCCATTGTATTTCTCGTTATTACCCTGGTCACATTCTCAACTCCTAT
TCACTTCTTCCTCTTGACTCCTCACTAGTTTGCCTCACCCCTTCCTACTC
ACTTCTCACGTTGCACTCGTGCGTCCCACTCTATAATCTCGTTACTCATA
TTCACTGATATCCCTCTACACATATTCATTACTTCTCCTCACACATATTC
ACTGCTTTCTCTTCACACATGTTCACCGCTGTCTCTCAACTCCTGTTCTC
ATCGTACTCTTGACGTCTCACCTTCTGGCCTCACCCCTTCCTACTCATTT
CCCACGTCGCACTCGTGCGTCCCACTCTATACAATCGTTACTCCTAATCA
CGTTACTCCTATTCATTGCTTTCTCTTCACACCTATCCACTGATTTCTTT
TCACACATATTCATTGCTTACTTTTCACTCCTTGCCTCGTCACTTATCAT
GTATCACTCCGACACGCCTGCCTGACTCCTTCCTCACTAAGGCCGTGGGA
CGTGGCCTACGTTGGAGATCCCATGTACCGCCCGCGTCGTGCGTGGGAAC
TGAAAGCACTCATCGCATTGTGGGTGGGGCTGTCGGAACTGGTGAATTCT
CGATGGCTGGGTTGGAGTACGCCGGTGAGTTTCCGGCCACATTCACATAA
GCACAAACCAGCCCCGAACATGCGGCTGTACCGCTATCCCTGGCCATCGC
AGTTTTTGTGCCAGTGTGAGTACAACACCGCTGCCACGAGACAGCTAGAG
AGAGTTTTTTCCGAAGTTTATCCCATCGATCACGTCGATCTGTTTTTTGT
TACCCGTCCAGGAGGATGGAGAGGGGTCTCGCGGCAGCGGCACCGACTCC
GTCTTCGACGACGAGGGTTCGGGCAAGGCTATCGCCCAAGGGAAGGACTT
CCAGCGGCGTATCTGGAGGGAGGTGCGGTGGGCGGGCCTTCCCTGCAGGG
TCAACCTGAGGCCCCTCGCGGATGTTCGGGCGGTAAGTGTAGGTTTCTCT
ACTCTGGCTCTCGCCCTCGGTGGTTACAGACTGAGAGCAAATCCTAGAGG
GTCCATCATCGTCCGGGTGGACCTTCGAGGGAGAACTCCGGTAGCGACAG
ACGTTTGCTGGACGATTGCTGTTGCGAACGTGTTGGAAGGAAGGTAGTTT
GGAGCGCATACAACAAGGCGTATCTTGTTCTCCTTCCGCTGAACAGACGA
TCATGGTGCAACTGAACCGCCGTGTGCGTCAAATAGAAAACAAACCACTC
GCGAAGGTTCGGACGCGCTTGGACGATGTACGCACTGAACTAATGTTCCA
TTCTGTACCATTGGATGGCCAAAACACGCTGAAGCGGAGTTAGCTTGGTC
CTGCTAAATGGTGGATATGCGATACGTTTTGTTGATACTGCATGCATGTG
TATGTCGCTGTTACTACGTGTGTTTTGGTTAAGCCAGCAGCTGTCATATC
GCGTGAAGGTAGGCGAGTAATGCCGAATATTGCCAGCGCTCCAAATCGCC
GGGGTTATCGACCCGCCTCCCCAACCGGATGCATGGAGTAGAGAGAGCGT
TCGCTTTCAACATAGCATCTTTCATTCGGAGTCGTATTCGATCACGTCCG
ATCCGCGCGGTCTCTCTCCGCTACGGCCACCATAGCTCCACAGCGGCAGT
GAGTGGTGTCTGCTAATGGCTTCAAGCACTCGTACTTCCTTTGGGCGTCG
TTCTCTCTCTATTTCGCCTCTGGAACATGAGGATCGTCTCGTGGTCGAAC
AGTCTAGTGCCCTAGTCTCACACTCACTCATGTCGTGTTGCGTTTTTAGT
GCGTCACCCGTACGGGGGGCAACATGCTGCCTGCCCTGGCTCCACCTATG
AATCCCCGCGATCATTTTCGCCGTTTTTCCCTCTTCTCTTGACTTGTTCT
CATTCTGCCCCTGTCGTCGCTGGCTACTCGTGTGAAGTCCTGCTATCGAT
TTTGATTTTGTCGTGCCCCCGCCTTTCTTGATTGTGTTCCTCTTGCCGCT
CCTTGTCCCACTCGTAATTTCTCCCTCGATCATTTGTCGTCTCCCTCCCT
CCCTTGGCGATTTGTTGTCCATGCTGTTCCTGCTGCGGCTTGCCGCCTGC
TGGCTGTAGACGGTCGGCCTTGGGGTCGCGCTCTACGTTCTTTGGCTGGC
CTACAGCCTTAGCTCCGTGTGCGGCGCCTGCGTGACGGTTATCCTGGTAG
CCTTGGTCGTCCGCCTGTCCACGATGACCATGGACTACTAATGGCCTGGT
GAACCATTCCAATCGGACTACGTCTAGCCTGCTTGAGGTAGACCATGGAC
TACGAGTCGATAGGCGAATCCGACCGGATTACCACAGGCGCCTTCGTGAG
GTGGTGGTGAGAGGAGACTTCTGTGTGAAAGTGCCCAGGGGGGTGGGAGC
TTCACGAGTACACAACCGTCTTGCTGATGAGGCTGAGTCAAGGACACGAT
GACTTTTGGTACCCCTTTCCAGCTTTGTTTTTGTGGTGAGCGGGGTTTTG
TGTCTTGGCCAGCGGTGGGGTTTGCTCTCCTTTTCTGGAGTCAGTTAAAC
GCGTGTACCTTTGTTTTACCACATAGAAGAGAAAAAAGGGAATCTCGAGA
GCAAAAAAATACTGGGCAGCGGTCGTTTTTTTCAGTGTAAAGTATGGGGT
GGCGCCAGCCTGGGCTGGAAAAATTGGATACTGAAGATAGGCTTAGGAAT
GCCTGCCTGAAAGATTATTATTCTTTGTTTCGTAGAGTAGCGGACGGAAC
ATGAGTAGAATTTAGCGGCAATTTAGTGTAAGGCAGATGAGTAGGGCTTG
GGATCCGAACCCCACGGTTGGGGCAGCGCCGTCTGATAAGACGGGGGGGC
TATACGAAACCAAAGCGTGCTGGCCCACTCGGCTGTGGCATCTGGTCGAC
AGCTTTTGACCTCGGCTATGACAAACGAAGTCGGTACACCTGTGGGTGCA
TTCGTCGCGCCACTTATGCCGGGCGCCAGTGGACGCCTTCGGCTATGTTT
GACGCACCACCGGAGGAAGGCCAACCTAGTGTTTTTGTTGTCTGCTGCTG
TGGCTTGTTTCATGTTTTCCTCTTCCTGCGCCTCCCTGCCTCGGATTGAT
TCACTCGAGTCTTGGAAGAGCAAATCGGAAAAAACATAATTTGTTCGACC
AATCGGAAACCGAGTGGTCGTTCGGTGTACGTTGGTGTAGACTTGAGGGA
AGGGAAGGCTCGTTCGAGTTTCACTTACGGAGTGCCCACTCTCTCGCGGC
AAAATGGTGTGGCTGAGCGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8798:7..4277+

>mRNA_E_fasciculatus_S2_contig8798.16892.1 ID=mRNA_E_fasciculatus_S2_contig8798.16892.1|Name=mRNA_E_fasciculatus_S2_contig8798.16892.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=540bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8798:7..4277+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGCTGTCCGAGATGTTCCACCCCGAGAGAGAAAAACAGGCACCGTT
TTTCCTGTCGCAACAAGGGAGAGCACAGCTAGCGTCCGGACAGAGGGCGT
GCAAGCCGTGGGACGTGGCCTACGTTGGAGATCCCATGTACCGCCCGCGT
CGTGCGTGGGAACTGAAAGCACTCATCGCATTGTGGGTGGGGCTGTCGGA
ACTGGTGAATTCTCGATGGCTGGGTTGGAGTACGCCGGAGGATGGAGAGG
GGTCTCGCGGCAGCGGCACCGACTCCGTCTTCGACGACGAGGGTTCGGGC
AAGGCTATCGCCCAAGGGAAGGACTTCCAGCGGCGTATCTGGAGGGAGGT
GCGGTGGGCGGGCCTTCCCTGCAGGGTCAACCTGAGGCCCCTCGCGGATG
TTCGGGCGACGGTCGGCCTTGGGGTCGCGCTCTACGTTCTTTGGCTGGCC
TACAGCCTTAGCTCCGTGTGCGGCGCCTGCGTGACGGTTATCCTGGTAGC
CTTGGTCGTCCGCCTGTCCACGATGACCATGGACTACTAA
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