mRNA_E_fasciculatus_S2_contig8784.16883.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8784.16883.1
Unique NamemRNA_E_fasciculatus_S2_contig8784.16883.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DTN7_9ACTN)

HSP 1 Score: 107 bits (267), Expect = 1.170e-27
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLLTG 342
            DT AS+  RF  E+ AW+AGPWAV   TGS   A  ALVVLVG PAVFNAPGDKN     IPGP+R+VIE  + A  V  + +V      A VA++A +++VTG  RYRWL +G
Sbjct:   14 DTVASSAFRFLIEIVAWVAGPWAVADLTGSNWLAIPALVVLVGLPAVFNAPGDKNTEGIVIPGPLRIVIEMFLAAVAVAASAIVWPAWGSAAVALIAAAMLVTGRARYRWLASG 127          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E2RFM4_9CHLR)

HSP 1 Score: 96.3 bits (238), Expect = 3.670e-23
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLLT 339
            DT AS  +RFA E+AAW+AGPWA  +  G+W A    L+VL+  P  F+  GDK   +  +PG VR++IE  ++A  +  A++V       +VAVLA  ++VTG RR +WLL+
Sbjct:   15 DTVASGASRFAVEIAAWVAGPWAAAELAGTWXATIPTLIVLIALPGAFSTVGDKRQVVVAVPGRVRLLIELVLIAVAISSAFLVWTPIGGIIVAVLAALMLVTGFRRAKWLLS 127          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A117RDV0_9ACTN)

HSP 1 Score: 93.2 bits (230), Expect = 3.190e-22
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLLT 339
            D   ++V RFAAEL AW+A PWA+   T SW  A  A+VVLVG P VF+ PGDK   I P+PG V +++    +AA    AWVV       LV++LAV+ +VT  RR+RWLL+
Sbjct:    5 DDRIASVPRFAAELVAWVATPWALS--THSWPLAVVAVVVLVGLPTVFSTPGDKAQVIVPVPGVVTILLVLLQLAAATIAAWVVWPTYAAVLVSLLAVTTLVTERRRWRWLLS 115          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A0M9ZWL5_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 8.630e-20
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLLT 339
            D   ++V RFAAEL AW+A PWA+  +  SW  A  +LVVL+G P VF+ PGDKN  I P+PG V +++    +AA V  AW V       LV+VL  + +V    R+RWLL+
Sbjct:    5 DDRIASVLRFAAELVAWVATPWALSLY--SWPLAVLSLVVLIGLPTVFSTPGDKNQVIVPVPGTVTILLVLLQLAAAVIAAWWVWPVYAAVLVSVLVAASLVAERHRWRWLLS 115          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=2 Tax=Streptomyces phyllanthi TaxID=1803180 RepID=A0A5N8WAE6_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 4.540e-19
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLLT 339
            D   ++V RFA+EL AW+A PWA+     SW +A  A+VVL+G P VF+ PGDK   I P+PGPV +++    + A +  AW+         V+VL  + +VT  RR+RWL++
Sbjct:    5 DDRIASVFRFASELVAWVATPWALSA--HSWPSAVLAVVVLIGLPTVFSTPGDKKQVIVPVPGPVTILLVVLQLVAALVSAWLAWPVYAAVPVSVLVAATLVTERRRWRWLVS 115          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A523HT82_9CHLR)

HSP 1 Score: 85.1 bits (209), Expect = 8.260e-19
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWL 333
            DTA SA +RFA E+ AW+AGPWA     G+W+A    L+VLV  PAVF+  GDK   I  +PG +R++IE  +    +  A++V       +VA L +  +VTG  R +WL
Sbjct:   13 DTAWSASSRFAVEIVAWVAGPWAAADLAGTWLAIIPVLIVLVALPAVFSTSGDKRHVIVAVPGRIRLLIELTLDVVAIYSAFLVWTPIGGIIVAALTLVALVTGFPRAKWL 123          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: hypothetical (protein n=1 Tax=Microtetraspora fusca TaxID=1997 RepID=UPI00157D8B2E)

HSP 1 Score: 84.0 bits (206), Expect = 1.430e-18
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   25 RFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLLT 339
            RFA EL AW+A PWA+  W+ S V A  ++VVL+G PAVF+ PGDK   + P+PG   + +     AA V  +W        A+V VL  + VVT A R+RWLLT
Sbjct:   15 RFATELVAWVATPWAL--WSHSVVLAIVSVVVLIGLPAVFSTPGDKAHVVIPVPGWATIALVLLQFAAAVASSWAAWHPVAGAVVVVLVAAAVVTEAPRWRWLLT 117          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=2 Tax=Streptomyces sp. MMG1533 TaxID=1415546 RepID=A0A0M9YXG7_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 1.480e-18
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   25 RFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLLT 339
            RFA+EL AW+A PWA+ ++  SWV A  ALV L+G P VF+ PGDK   I P+PG V +++    + A V  AW+V       LV++L  + +VT  RR++WL++
Sbjct:    2 RFASELVAWVATPWALSEY--SWVLAVLALVALIGLPTVFSTPGDKAQVIVPVPGVVTILLVVLQLVAAVISAWLVWPVLAAVLVSLLVSTTLVTERRRWQWLVS 104          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C7TR56_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 1.700e-18
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWL 333
            DT  SA TRFA ELAAWIAGPWA     G+W+     L + V  P VF+  GDK   +  +PG +R+ IE  + A  +  + VV        VAV+A+++ V GA R +WL
Sbjct:   16 DTKISASTRFAIELAAWIAGPWAAADLAGNWLVTIPVLAIFVALPGVFSTTGDKRHVVVAVPGRIRLFIEILLAAVAIYSSLVVWTYIGAIAVAVIALAMFVAGAPRAKWL 126          
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Match: hypothetical (protein n=1 Tax=Streptomyces griseus TaxID=1911 RepID=UPI000A7039C8)

HSP 1 Score: 83.6 bits (205), Expect = 3.310e-18
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNAPGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVXXXXXXALVAVLAVSVVVTGARRYRWLL 336
            D  ASA+ RFA EL AW+A PWA+  +  SW  A  A+VVL+G P VF+ PGDK+  I P+PG V +++    +AA V  AW         LV +LAV+ +VT   R+ WLL
Sbjct:    6 DRIASAL-RFATELIAWVATPWALSAY--SWPLAVLAVVVLIGLPTVFSTPGDKSRVIVPVPGTVTILLVLLQLAAAVVSAWTAWPIPAALLVTLLAVTTLVTERHRWHWLL 114          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8784.16883.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.170e-2753.51protein n=1 Tax=Acidimicrobiales bacterium TaxID=2... [more]
Uncharacterized3.670e-2343.36protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E2RFM4_... [more]
Uncharacterized3.190e-2248.67protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A1... [more]
Uncharacterized8.630e-2045.13protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A0... [more]
Uncharacterized4.540e-1941.59protein n=2 Tax=Streptomyces phyllanthi TaxID=1803... [more]
Uncharacterized8.260e-1942.34protein n=1 Tax=Chloroflexi bacterium TaxID=202672... [more]
hypothetical1.430e-1845.71protein n=1 Tax=Microtetraspora fusca TaxID=1997 R... [more]
Uncharacterized1.480e-1843.81protein n=2 Tax=Streptomyces sp. MMG1533 TaxID=141... [more]
Uncharacterized1.700e-1842.34protein n=1 Tax=Dehalococcoidia bacterium TaxID=20... [more]
hypothetical3.310e-1845.54protein n=1 Tax=Streptomyces griseus TaxID=1911 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8784contigE_fasciculatus_S2_contig8784:2716..3057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score84.7
Seed ortholog evalue3e-14
Seed eggNOG ortholog1463917.JODC01000019_gene2687
Model size342
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2E8ZP@1,2IS4U@201174,33396@2
Cds size342
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842534.109201-CDS-E_fasciculatus_S2_contig8784:2715..30571696842534.109201-CDS-E_fasciculatus_S2_contig8784:2715..3057Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8784 2716..3057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8784.16883.1prot_E_fasciculatus_S2_contig8784.16883.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8784 2716..3057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8784.16883.1

>prot_E_fasciculatus_S2_contig8784.16883.1 ID=prot_E_fasciculatus_S2_contig8784.16883.1|Name=mRNA_E_fasciculatus_S2_contig8784.16883.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
DTAASAVTRFAAELAAWIAGPWAVRKWTGSWVAAFAALVVLVGTPAVFNA
PGDKNVTIFPIPGPVRVVIEAAVVAAGVGGAWVVWPVWAFALVAVLAVSV
VVTGARRYRWLLTG
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mRNA from alignment at E_fasciculatus_S2_contig8784:2716..3057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8784.16883.1 ID=mRNA_E_fasciculatus_S2_contig8784.16883.1|Name=mRNA_E_fasciculatus_S2_contig8784.16883.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8784:2716..3057+ (Ectocarpus fasciculatus EfasUO2)
GACACCGCGGCCTCGGCCGTAACTCGGTTCGCAGCGGAACTAGCAGCGTG GATCGCTGGCCCATGGGCCGTACGAAAGTGGACCGGGTCCTGGGTGGCGG CGTTTGCGGCTTTAGTGGTGCTGGTCGGCACACCGGCCGTATTCAACGCA CCTGGCGATAAGAACGTGACCATCTTCCCAATCCCTGGCCCCGTCCGGGT GGTCATAGAAGCCGCGGTCGTTGCAGCTGGTGTGGGCGGGGCATGGGTGG TCTGGCCTGTATGGGCGTTTGCGCTGGTTGCAGTCCTTGCAGTATCCGTC GTCGTCACCGGTGCAAGGCGATACCGTTGGCTACTTACGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8784:2716..3057+

>mRNA_E_fasciculatus_S2_contig8784.16883.1 ID=mRNA_E_fasciculatus_S2_contig8784.16883.1|Name=mRNA_E_fasciculatus_S2_contig8784.16883.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8784:2716..3057+ (Ectocarpus fasciculatus EfasUO2)
GACACCGCGGCCTCGGCCGTAACTCGGTTCGCAGCGGAACTAGCAGCGTG
GATCGCTGGCCCATGGGCCGTACGAAAGTGGACCGGGTCCTGGGTGGCGG
CGTTTGCGGCTTTAGTGGTGCTGGTCGGCACACCGGCCGTATTCAACGCA
CCTGGCGATAAGAACGTGACCATCTTCCCAATCCCTGGCCCCGTCCGGGT
GGTCATAGAAGCCGCGGTCGTTGCAGCTGGTGTGGGCGGGGCATGGGTGG
TCTGGCCTGTATGGGCGTTTGCGCTGGTTGCAGTCCTTGCAGTATCCGTC
GTCGTCACCGGTGCAAGGCGATACCGTTGGCTACTTACGGGG
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