mRNA_E_fasciculatus_S2_contig8784.16882.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8784.16882.1
Unique NamemRNA_E_fasciculatus_S2_contig8784.16882.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH75_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.170e-77
Identity = 132/156 (84.62%), Postives = 137/156 (87.82%), Query Frame = 1 
Query:    1 AVGGSSKEQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKSDKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYERVKGEAAPTFPASVLDAAVVRTKLAREGKRRRQGQTSGAQVTAEKPVESTGAVDAAAAADELKDKVTAVAPEPTE 468
            A GGSSKEQFVSPLVLPKLPSRVYVRFGEA+TLEGLDKSDK+ACQ AYE VKDEVELGIQSLLRAREQDPYLDP TRLLYERVKGEAAPTFPASVLDAAV+RT+LAREGKRRRQ Q S   V  EKPVEST  V  AAA D+L D VTAV PEPTE
Sbjct:   28 ARGGSSKEQFVSPLVLPKLPSRVYVRFGEAITLEGLDKSDKKACQGAYETVKDEVELGIQSLLRAREQDPYLDPTTRLLYERVKGEAAPTFPASVLDAAVLRTRLAREGKRRRQRQRSVTPVRTEKPVESTIGVGTAAA-DKLADNVTAVVPEPTE 182
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRM0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.990e-16
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    7 GGSSKEQFVSPLVLPK-LPSRVYVRFGEAVTLEGLDKSDKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYERVKGEAAPTFPASVL 288
            G    E F  P  LPK LP+R Y  FG  +  E LD SDKE C+  Y+NVK E+  G   +L+ARE DP+ D A R+ +E+V G+ APTF  + L
Sbjct:  630 GDEQSELFQPPFALPKPLPARHYFVFGTPMDTEHLDHSDKEGCENFYDNVKSEMMRGFDDILQARENDPWKDTARRIAFEQVTGKIAPTFSVNEL 724
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: PlsC (domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WID5_MARPO)

HSP 1 Score: 73.9 bits (180), Expect = 2.140e-12
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 AVGGSSKEQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKS--DKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYERVKGEAAPTF 273
            A G  + E FV PL  PK+P R+Y  F + +T EG+  S  D++A  + Y  VKDEVE G+  L + R  DPY +   R+LYE      APTF
Sbjct:  797 ATGEVANETFVFPLAYPKIPPRMYFLFQQPITTEGMIDSINDRDAMNDLYLKVKDEVESGLDYLQQKRNADPYKEFGPRVLYEATNDSQAPTF 889
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DBX7_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 7.250e-12
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   22 EQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKSDKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYERVKGEAAPTFPA 279
            E FV PL +P  P+R Y  F + +  E +D  DK+ACQ  Y  V+ EVE GI+ LL  R +DP+ D A R LY  +  + AP   A
Sbjct:  695 ETFVMPLSVPTFPTRFYFLFRKPIGTEDIDYKDKKACQALYNQVRSEVEKGIEDLLYERNKDPFKDFAPRALYTALNNKTAPRAEA 780
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Hypothetical (protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJ81_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.280e-11
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   10 GSSKEQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKS----DKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYERVKG-EAAPTF 273
            G   E FV PL +PK P R Y +FG+ V   GL K     D  A Q  Y++V+ EVE GI  LLR R +DP+ D   R LYE   G + APTF
Sbjct:  495 GGDAENFVQPLFVPKTPQRFYFKFGKPVGTAGLYKEGFMKDDVAVQAMYDDVRGEVEGGIDWLLRRRGEDPFGDTGFRTLYEAASGGKQAPTF 587
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Hypothetical (protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGW0_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.350e-11
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   10 GSSKEQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKS----DKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYERVKG-EAAPTF 273
            G   E FV PL +PK P R Y +FG+ V   GL K     D  A Q  Y++V+ EVE GI  LLR R +DP+ D   R LYE   G + APTF
Sbjct:  713 GGDAENFVQPLFVPKTPQRFYFKFGKPVGTAGLYKEGFMKDDVAVQAMYDDVRGEVEGGIDWLLRRRGEDPFGDTGFRTLYEAASGGKQAPTF 805
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Predicted (protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J402_CHLRE)

HSP 1 Score: 70.1 bits (170), Expect = 4.210e-11
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   22 EQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKSDKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYER 246
            E F+ PL+ P +PSR Y  FG  V        D+ AC + Y +VK +VE GI  LLR REQDPY D  TR++YE+
Sbjct:  397 ESFIPPLIAPAVPSRWYFLFGRPVATTPDMYRDRAACDKVYADVKRQVEEGIDYLLRKREQDPYRDFLTRMVYEQ 471
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Hydrolase_4 (domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DGW3_CHLRE)

HSP 1 Score: 70.1 bits (170), Expect = 4.680e-11
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   22 EQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKSDKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYER 246
            E F+ PL+ P +PSR Y  FG  V        D+ AC + Y +VK +VE GI  LLR REQDPY D  TR++YE+
Sbjct:  794 ESFIPPLIAPAVPSRWYFLFGRPVATTPDMYRDRAACDKVYADVKRQVEEGIDYLLRKREQDPYRDFLTRMVYEQ 868
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y941_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 8.580e-11
Identity = 39/82 (47.56%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:    1 AVGGSSKEQFVSPLVLPKLP-SRVYVRFGEAVTLEGLDKSDKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYE 243
            A G    E FV PL+ P  P SR Y  FG+ V        D+EAC + Y  VK  V+ GI  LLR REQDPY D  TR++YE
Sbjct:  715 AAGAGIDETFVPPLIAPSWPPSRFYFHFGKPVRTSPDMAKDREACDKVYGEVKSAVQDGITYLLRKREQDPYADFLTRMVYE 796
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BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6L173_LACSA)

HSP 1 Score: 65.9 bits (159), Expect = 1.120e-10
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    7 GGSSKEQFVSPLVLPKLPSRVYVRFGEAVTLEGLDK--SDKEACQEAYENVKDEVELGIQSLLRAREQDPYLDPATRLLYERVKGE 258
            G  +K+ F +P+VLPKLP R+Y  FG+ +  +G +   +DK+  QE Y  +K +VE  +  LL+ RE DPY     RLL+E   G+
Sbjct:   56 GEIAKQPFHTPVVLPKLPGRLYFMFGKPIQTKGKENIVNDKDYLQELYMQIKFDVEKNVTYLLKKREGDPYRSIVQRLLWEMKYGD 141
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8784.16882.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.170e-7784.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical4.990e-1646.32protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
PlsC2.140e-1243.01domain-containing protein n=2 Tax=Marchantia polym... [more]
Hypothetical7.250e-1243.02protein n=1 Tax=Amorphochlora amoebiformis TaxID=1... [more]
Hypothetical1.280e-1146.24protein n=1 Tax=Mantoniella antarctica TaxID=81844... [more]
Hypothetical1.350e-1146.24protein n=1 Tax=Mantoniella antarctica TaxID=81844... [more]
Predicted4.210e-1148.00protein n=1 Tax=Chlamydomonas reinhardtii TaxID=30... [more]
Hydrolase_44.680e-1148.00domain-containing protein n=1 Tax=Chlamydomonas re... [more]
Uncharacterized8.580e-1147.56protein n=1 Tax=Edaphochlamys debaryana TaxID=4728... [more]
Uncharacterized1.120e-1040.70protein n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8784contigE_fasciculatus_S2_contig8784:276..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score80.1
Seed ortholog evalue1e-12
Seed eggNOG ortholog227086.JGI_V11_125940
Model size471
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
Exons2
EggNOG free text desc.fatty alcohol metabolic process
EggNOG OGs2QQUD@2759,COG0204@1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_000230.1
Cds size471
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842534.06374-CDS-E_fasciculatus_S2_contig8784:275..4311696842534.06374-CDS-E_fasciculatus_S2_contig8784:275..431Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8784 276..431 +
1696842534.077728-CDS-E_fasciculatus_S2_contig8784:683..9981696842534.077728-CDS-E_fasciculatus_S2_contig8784:683..998Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8784 684..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8784.16882.1prot_E_fasciculatus_S2_contig8784.16882.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8784 276..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8784.16882.1

>prot_E_fasciculatus_S2_contig8784.16882.1 ID=prot_E_fasciculatus_S2_contig8784.16882.1|Name=mRNA_E_fasciculatus_S2_contig8784.16882.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=157bp
AVGGSSKEQFVSPLVLPKLPSRVYVRFGEAVTLEGLDKSDKEACQEAYEN
VKDEVELGIQSLLRAREQDPYLDPATRLLYERVKGEAAPTFPASVLDAAV
VRTKLAREGKRRRQGQTSGAQVTAEKPVESTGAVDAAAAADELKDKVTAV
APEPTE*
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mRNA from alignment at E_fasciculatus_S2_contig8784:276..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8784.16882.1 ID=mRNA_E_fasciculatus_S2_contig8784.16882.1|Name=mRNA_E_fasciculatus_S2_contig8784.16882.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=723bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8784:276..998+ (Ectocarpus fasciculatus EfasUO2)
GCTGTAGGTGGAAGCTCTAAGGAGCAGTTCGTGTCGCCACTGGTGTTGCC
GAAGCTCCCGTCTCGAGTGTATGTTAGATTCGGCGAGGCGGTCACCCTTG
AAGGCCTGGACAAGAGCGACAAGGAAGCTTGCCAAGAGGCTTATGAGAAT
GTCAAGGTATGACGCTACGCTACAATGGGATGCTTCGCAACGCGCCTGTA
TATATATTTTTTTATTTTTTGTGGGATCGCTGCCGCGCTTTGGTGACAAA
ATTCCGTCCCTCCTTTTCTTCCATCACCTTTTCCCTCGAAAAGCTAGTCG
GGGGAGTATAGCCTTTTTACAGTTGGTACCTGCTCAGGCGATGATATCGA
AATATACGACTCTGCGGCCTTTAAGCCCACGCAACGTTTGACCCTTCCTA
CCCACCAGGACGAGGTGGAGCTAGGCATCCAGTCATTGCTGAGAGCACGA
GAGCAAGACCCGTACCTTGACCCGGCAACACGGCTGCTCTACGAGCGGGT
GAAGGGGGAAGCCGCCCCTACGTTTCCCGCCTCAGTTCTCGACGCCGCGG
TAGTGAGAACAAAACTTGCTCGTGAAGGGAAGCGACGAAGACAGGGGCAG
ACAAGCGGCGCACAGGTCACGGCGGAGAAGCCTGTGGAGTCGACAGGGGC
CGTGGATGCCGCCGCCGCGGCTGACGAGTTGAAAGATAAAGTTACCGCTG
TGGCCCCTGAACCAACGGAGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8784:276..998+

>mRNA_E_fasciculatus_S2_contig8784.16882.1 ID=mRNA_E_fasciculatus_S2_contig8784.16882.1|Name=mRNA_E_fasciculatus_S2_contig8784.16882.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=471bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8784:276..998+ (Ectocarpus fasciculatus EfasUO2)
GCTGTAGGTGGAAGCTCTAAGGAGCAGTTCGTGTCGCCACTGGTGTTGCC
GAAGCTCCCGTCTCGAGTGTATGTTAGATTCGGCGAGGCGGTCACCCTTG
AAGGCCTGGACAAGAGCGACAAGGAAGCTTGCCAAGAGGCTTATGAGAAT
GTCAAGGACGAGGTGGAGCTAGGCATCCAGTCATTGCTGAGAGCACGAGA
GCAAGACCCGTACCTTGACCCGGCAACACGGCTGCTCTACGAGCGGGTGA
AGGGGGAAGCCGCCCCTACGTTTCCCGCCTCAGTTCTCGACGCCGCGGTA
GTGAGAACAAAACTTGCTCGTGAAGGGAAGCGACGAAGACAGGGGCAGAC
AAGCGGCGCACAGGTCACGGCGGAGAAGCCTGTGGAGTCGACAGGGGCCG
TGGATGCCGCCGCCGCGGCTGACGAGTTGAAAGATAAAGTTACCGCTGTG
GCCCCTGAACCAACGGAGTAG
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