mRNA_E_fasciculatus_S2_contig8775.16872.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8775.16872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U5_ECTSI) HSP 1 Score: 674 bits (1740), Expect = 6.520e-232 Identity = 466/734 (63.49%), Postives = 492/734 (67.03%), Query Frame = 1
Query: 1 RENLMSMVGWTAEGGVGTTSHERGGDAIVEALRAVAYTEPPDQWSGRDERKGREGAEGGQG-HRQDGASGRNNGGG-----ARFGREHQWVRRVDSKSAAEKQRDEDAHVCSDDDPVCGRGRDGLKWRRKG--------------------RGGGGGWXEXGSEGTASGGERSDGCSADGEGHASKKRRTPSPDPARKSSLAAEDAADSAMGSSAGGAAAPRPREANQPTTVEEKAAAEDRALREAEVIRWCQRVSSPRAMSGDGGTAAAGPDENFFAGRVLDPVPARHRPGTVRNRTGGSNVSDAVVGWGVAETAASSSPPP----CLGFGVGDLGGDGRGGDDSNRSGSGSSGGTDAASGLDQCPSSRDEEEAMAGVATRATSLPTAKCNSRSPLAAGFAGAALASSATSGEAAXXXXXXXXXXXXXXXXX-SGRPTPSAREQEGFFASHTLEPSARMSWILAAGEERPAGGETQGLGASGTALPEPAHGIS--PDSQRSGDADPGAAGSGSERREGHNPLCWTDTAGRYPPFFEEGAGAAAVADTGSSGGANDWQVRPEAMAGFFTTVGRSAYSPAVLLHSHRRPSPPRVRSPPAIGPAASAGVGIHPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGYSPVCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVRDSSSVSSGWDVGSAGXXXXXXESGKEEEGDNSWGW 2103
RENL+SM+GWTAEGG+GT + ERGGDAIV+ALRAVAYTEPPD+WSG +E+KGREG EGGQG HR++ +R G + QWVRRVD KSA K R +DAH CSDD VCG G DGLKWRRKG X X T SGGERSDGCSA E HASKK RTPSP+ ARKSSLAAEDAADSAMGSS GAAA RP LREAEVI+WCQR SSPRA+SGDGG AAAGPDE FFA RVLDPVPARH PGT R RTGGS VSDAV GWG AETAASSSPPP CL FGVG+L GDGR D N SGSGSSGGTDAASGLDQ PSSRDE AM GV TRA S P AKCNSRSPLA+GFAGAALAS+ XXXXXXXXXXXXXXXX SGR PSAREQEGFFASHTLEPS SWI+AAGE AGGET GASGT +P+PAHGI PDSQRS D GAAGSGSERREGHNPLCW+DTAGRYPP FEE A AAV DT SSG ANDWQVRP AMAGFFTTVG SA SPA LL S RRPSPPRVRSPPA+GPAA A VGI PP +LG+SPV G XXXXXXX SVRDSSSVSSGWDVGSAG SGKEEEGDNSWGW
Sbjct: 79 RENLLSMIGWTAEGGIGTPN-ERGGDAIVQALRAVAYTEPPDEWSGGNEQKGREGTEGGQGPHRREDXXXXXXXXXXXXXXSRVGGKQQWVRRVDEKSAGGKCRGDDAHACSDDG-VCGTGHDGLKWRRKGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSGGERSDGCSAGEEVHASKKHRTPSPESARKSSLAAEDAADSAMGSSNAGAAAARPGAXXXXXXXXXXXXXXXXXLREAEVIQWCQRGSSPRAISGDGG-AAAGPDEKFFAARVLDPVPARHWPGTARTRTGGSKVSDAVFGWGAAETAASSSPPPLRPPCLRFGVGELSGDGRRED--NHSGSGSSGGTDAASGLDQFPSSRDEA-AMVGV-TRAASPPAAKCNSRSPLASGFAGAALASAXXXXXXXXXXXXXXXXXXXXXXXTGSGRSPPSAREQEGFFASHTLEPSPGRSWIVAAGEAGSAGGETHRAGASGTTVPKPAHGIPMPPDSQRSDDDASGAAGSGSERREGHNPLCWSDTAGRYPPLFEEVAAGAAVVDTESSGSANDWQVRPGAMAGFFTTVGHSACSPAALLLSQRRPSPPRVRSPPAVGPAAPARVGIQPPSTAIVAEAAAEAEAGRVAKPTADSERRQQ-----ILGHSPVWGSGGXXXXXXXEGTPAALPAAAVVTREGTVPAVSRTNGG---SVRDSSSVSSGWDVGSAGGGAAGDGSGKEEEGDNSWGW 797
BLAST of mRNA_E_fasciculatus_S2_contig8775.16872.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD8_9PHAE) HSP 1 Score: 631 bits (1627), Expect = 1.940e-212 Identity = 454/731 (62.11%), Postives = 480/731 (65.66%), Query Frame = 1
Query: 1 RENLMSMVGWTAEGGVGTTSHERGGDAIVEALRAVAYTEPPDQWSGRDERKGREGAEGGQGHRQDGASGRNNGGG-----ARFGREHQWVRRVDSKSAAEKQRDEDAHVCSDDDPVCGRGRDGLKWRRKGRGGGGGWXEX-----GS-EGTASGGERSDGCSADGEGHASKKRRTPSPDPARKSSLAAEDAADSAMGSSAGGAAAPRPREANQPTTVEEKAAAEDRALREAEVIRWCQRVSSPRAMSGDGGTA---------AAGPDENFFAGRVLDPVPARHRPGTVRNRTGGSNVSDAVVGWGVAETAASSSPPPC----LGFGVGDLGGDGRGGDDSNRSGSGSSGGTDAASGLDQCPSSRDEEEAMAGVATRATSLPTAKCNSRSPLAAGFAGAALASSATSGEAAXXXXXXXXXXXXXXXXXSGRPTP-SAREQEGFFASHTLEPSARMSWILAAGEERPAGGETQGLGASGTALPEPAHGIS--PDSQRSGDADPGAAGSGSERREGHNPLCWTDTAGRYPPFFEEGAGAAAVADTGSSGGANDWQVRPEAMAGFFTTVGRSAYSPAVLLHSHRRPSPPRVRSPPAIGPAASAG---VGIHPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGYSPVCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVRDSSSVSSGWDVGSAGXXXXXXESGKEEEGDNSWGW 2103
RENLMSM+GWTAEGGVGT SH+RGGDAIV+ALRAVA TEPPDQW G +ERKGREG E QG R ARFG E QWVRRV+ K + R EDAHVCSDD VCGRG+DGLKWRRK G X X GS EGT SGGERSDGCSAD E HA KKRRTPSPD ARKSS AAEDAA SAMGSS+ GAAA RP + AEVIRWCQRVSS RAMSGDGG A AAGPDE FFAGRVL+PVP+RH PGT R RTGGSNVSDAV G G A TAASS PPP LG GVG+L GRG DD++RSGSGSSGGTDA DQCPSSRDEE AMAGV TRA S PTAKCNSR PLA+GFAGAALAS XXXXXXXXXXXXXXXXX R +P SA+EQ+GF SHTLEP R SWILAAG E A GETQG GASGTA+P+PAHGI PDSQRS G A SGS+RREGHNPLCW+DTAGR PP FEEGA AAVADT SSG ANDWQVRPEAM GFFTTV SA SPA LLHS RRPSPPR+RSPPAIGP A A VG P VLGYSPV G XXXXXXXX VR+SSSV SG DVG AG ESG +EEGD+SWGW
Sbjct: 268 RENLMSMIGWTAEGGVGT-SHDRGGDAIVQALRAVACTEPPDQWPGGNERKGREGTEVVQGRRXXXXXXXXXXXXXXXXXARFGGEQQWVRRVNEKPTGGECRGEDAHVCSDD-RVCGRGQDGLKWRRKSSGXXXXXXXXXXXXXGSREGTTSGGERSDGCSADEEVHAPKKRRTPSPDTARKSSPAAEDAAHSAMGSSSAGAAAARPGAVDXXXXXXXXXXXXXXXXXXAEVIRWCQRVSSARAMSGDGGAAPGVGGISSSAAGPDEKFFAGRVLEPVPSRHWPGTARTRTGGSNVSDAVFGRGAAVTAASSLPPPLQPPYLGLGVGNLSSRGRG-DDNHRSGSGSSGGTDATRDSDQCPSSRDEE-AMAGV-TRAASPPTAKCNSRIPLASGFAGAALASXXXXXXXXXXXXXXXXXXXXXXXXXESRQSPPSAQEQQGFLDSHTLEPKPRRSWILAAGAEGSARGETQGAGASGTAVPKPAHGIPMPPDSQRSDHDASGPAWSGSQRREGHNPLCWSDTAGRNPPVFEEGAAGAAVADTESSGSANDWQVRPEAMVGFFTTVDHSACSPAALLHSQRRPSPPRLRSPPAIGPVAPAAPTEVGTQP---------SPTAVGAAAAAGRVAKPTTDAERMQQVLGYSPVWGSGXXXXXXXXTPSAAAAVTREATVAAVSRTNVGC--------VRESSSVYSGRDVGWAGAGAAEDESGPKEEGDSSWGW 976 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8775.16872.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8775.16872.1 >prot_E_fasciculatus_S2_contig8775.16872.1 ID=prot_E_fasciculatus_S2_contig8775.16872.1|Name=mRNA_E_fasciculatus_S2_contig8775.16872.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=698bp MSMVGWTAEGGVGTTSHERGGDAIVEALRAVAYTEPPDQWSGRDERKGREback to top mRNA from alignment at E_fasciculatus_S2_contig8775:2590..5127- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8775.16872.1 ID=mRNA_E_fasciculatus_S2_contig8775.16872.1|Name=mRNA_E_fasciculatus_S2_contig8775.16872.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2538bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8775:2590..5127- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8775:2590..5127- >mRNA_E_fasciculatus_S2_contig8775.16872.1 ID=mRNA_E_fasciculatus_S2_contig8775.16872.1|Name=mRNA_E_fasciculatus_S2_contig8775.16872.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2094bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8775:2590..5127- (Ectocarpus fasciculatus EfasUO2)back to top |