mRNA_E_fasciculatus_S2_contig8763.16865.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8763.16865.1
Unique NamemRNA_E_fasciculatus_S2_contig8763.16865.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8763.16865.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8763contigE_fasciculatus_S2_contig8763:5261..5671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size411
Hectar predicted targeting categorymitochondrion
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842532.0992587-CDS-E_fasciculatus_S2_contig8763:5260..56711696842532.0992587-CDS-E_fasciculatus_S2_contig8763:5260..5671Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8763 5261..5671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8763.16865.1prot_E_fasciculatus_S2_contig8763.16865.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8763 5261..5671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8763.16865.1

>prot_E_fasciculatus_S2_contig8763.16865.1 ID=prot_E_fasciculatus_S2_contig8763.16865.1|Name=mRNA_E_fasciculatus_S2_contig8763.16865.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
VVFRQAGSCNLNLGIFRCRQLLAKLDRSVFGAAPDWRGMSPGAWCRRTAF
RWRMYQREKIRGHCRVYWGTKSGRANRDHSLRTLGPMVVVVVVAAAVGCS
VVAEVAPGECYPLAYGLDFFAEKSTKFFPLRVSFVRQ
back to top

mRNA from alignment at E_fasciculatus_S2_contig8763:5261..5671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8763.16865.1 ID=mRNA_E_fasciculatus_S2_contig8763.16865.1|Name=mRNA_E_fasciculatus_S2_contig8763.16865.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8763:5261..5671+ (Ectocarpus fasciculatus EfasUO2)
GTCGTTTTCAGGCAGGCAGGCTCCTGCAATCTCAATCTTGGCATTTTCCG
CTGCCGTCAGTTGTTGGCGAAGCTTGACCGTTCGGTGTTCGGTGCGGCCC
CTGATTGGAGGGGGATGTCACCGGGCGCGTGGTGCAGAAGAACCGCTTTT
CGCTGGCGCATGTATCAGAGGGAAAAAATAAGAGGTCATTGCAGGGTGTA
TTGGGGGACCAAATCGGGGCGTGCCAATCGCGATCACTCCCTTCGCACAC
TCGGTCCAATGGTTGTTGTTGTTGTTGTTGCTGCTGCGGTCGGGTGCTCT
GTGGTTGCTGAGGTGGCCCCTGGTGAATGCTACCCTCTGGCTTATGGCTT
AGACTTCTTTGCTGAGAAATCCACGAAATTTTTTCCGTTGCGCGTTTCGT
TCGTCCGGCAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8763:5261..5671+

>mRNA_E_fasciculatus_S2_contig8763.16865.1 ID=mRNA_E_fasciculatus_S2_contig8763.16865.1|Name=mRNA_E_fasciculatus_S2_contig8763.16865.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8763:5261..5671+ (Ectocarpus fasciculatus EfasUO2)
GTCGTTTTCAGGCAGGCAGGCTCCTGCAATCTCAATCTTGGCATTTTCCG
CTGCCGTCAGTTGTTGGCGAAGCTTGACCGTTCGGTGTTCGGTGCGGCCC
CTGATTGGAGGGGGATGTCACCGGGCGCGTGGTGCAGAAGAACCGCTTTT
CGCTGGCGCATGTATCAGAGGGAAAAAATAAGAGGTCATTGCAGGGTGTA
TTGGGGGACCAAATCGGGGCGTGCCAATCGCGATCACTCCCTTCGCACAC
TCGGTCCAATGGTTGTTGTTGTTGTTGTTGCTGCTGCGGTCGGGTGCTCT
GTGGTTGCTGAGGTGGCCCCTGGTGAATGCTACCCTCTGGCTTATGGCTT
AGACTTCTTTGCTGAGAAATCCACGAAATTTTTTCCGTTGCGCGTTTCGT
TCGTCCGGCAA
back to top