mRNA_E_fasciculatus_S2_contig876.16860.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig876.16860.1
Unique NamemRNA_E_fasciculatus_S2_contig876.16860.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig876.16860.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC1_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.080e-71
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:    1 MRTTFDEWDTLLFPNPPSRVEGGPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQQVSNTLAPLGHSSSSPATLALPESQQDVAGGDAATPRRGSGRIILADEISNRRG 360
            MRTTFDEWDTLLFPNPPSRVEG PKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQ VSNTLAPLGHS+SSPATLAL ESQQDVAGGDAATPRRGSGRIILADEISNRRG
Sbjct:    1 MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQ-VSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRG 119
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BLAST of mRNA_E_fasciculatus_S2_contig876.16860.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 6.590e-66
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 1 
Query:    1 MRTTFDEWDTLLFPNPPSRVEGGPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQQVSNTLAPLGHSSSSPATLALPESQQDVAGGDAATPRRGSGRIILADEISNRRGR 363
            MRTTFDEWDTLLFPNPPSRVEG PKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQ VSNTLAPLGHS+SSPATLAL ESQQDVAGGDAATPRRGSGRIILADEISNRRGR
Sbjct:  564 MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQ-VSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRGR 683
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig876.16860.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.080e-7196.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
EF-hand6.590e-6696.69domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig876contigE_fasciculatus_S2_contig876:2662..4128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size366
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002110.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842531.6535852-CDS-E_fasciculatus_S2_contig876:2661..26971696842531.6535852-CDS-E_fasciculatus_S2_contig876:2661..2697Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig876 2662..2697 +
1696842531.6639793-CDS-E_fasciculatus_S2_contig876:3228..33901696842531.6639793-CDS-E_fasciculatus_S2_contig876:3228..3390Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig876 3229..3390 +
1696842531.6735435-CDS-E_fasciculatus_S2_contig876:3960..41281696842531.6735435-CDS-E_fasciculatus_S2_contig876:3960..4128Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig876 3961..4128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig876.16860.1prot_E_fasciculatus_S2_contig876.16860.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig876 2662..4128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig876.16860.1

>prot_E_fasciculatus_S2_contig876.16860.1 ID=prot_E_fasciculatus_S2_contig876.16860.1|Name=mRNA_E_fasciculatus_S2_contig876.16860.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp
MRTTFDEWDTLLFPNPPSRVEGGPKFAETKKRESYFQEFCSVTEKFEENR
VRAQRLSGEAAAFAMQQVSNTLAPLGHSSSSPATLALPESQQDVAGGDAA
TPRRGSGRIILADEISNRRGR*
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mRNA from alignment at E_fasciculatus_S2_contig876:2662..4128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig876.16860.1 ID=mRNA_E_fasciculatus_S2_contig876.16860.1|Name=mRNA_E_fasciculatus_S2_contig876.16860.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1467bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig876:2662..4128+ (Ectocarpus fasciculatus EfasUO2)
ATGAGAACCACGTTCGACGAGTGGGACACCCTATTGGTGAGGCAGAACTC
TTCTCTTCACGCGCATGAAAGACCCCCCGACGACGACGACGACGACAACA
ACGCTGTTTTTTCTTCCTCCGTTAATATCCCCACTAGCTAGGATGGTTTA
CGTGATAGGATTCTCGGTGTCGTAGTATAGAGTTGTATTGGCAGATCTTC
CTCTATCGGGCTGACCGACAGCCGTAGTGAGTTCGACGTGCAGTGGGCTC
CGTTGTAACTTCGGGCAGATACGCACGACGTTTTGACGTCGAATATTATA
TCCGTTCGCCGACCTCTGGTCATGGCAGCCTAGACCAGGAAAGCATTGCT
CGAGTGCAGTACGACCGGGCAATACCTTATGGGGAAAGAGGTGGCCTCGT
AGAGGGGATGAAGAGAAACAAAAAAGAGGAGGGCCATGGTGGCTGAAAAA
TGGTCAACGTCTATGTGCATACATCGGTCAAGAAACGAAACTCCACTCCG
GTCCTCGAGCGAAACGCGAAAACGCGAACGAAAAACTGACAACACCGCCC
CCCCCGGTCTCCAACAGTTCCCGAACCCGCCATCTCGGGTGGAAGGCGGC
CCGAAGTTCGCCGAAACCAAGAAGAGGGAGTCGTACTTCCAGGAGTTTTG
CAGCGTGACGGAGAAGTTCGAGGAGAACCGTGTCAGGGCACAGCGGCTTA
GCGGCGAGGCTGCTGCCTTCGCCATGCAGGTTGGGAGATGACGATGCAGG
AGGAAGGCGTGAGAGTACGAAACAGAGCGGGGGGGTATTGATGTTTCGCA
TGCCTTAGTTATTTGACCATTGGCCACGCCTCCTCGAGAGGACGGAGCAT
TGTTCCCACAGGACTGACCACCGATGGCCAATCATTCCTTCCTACGTTGC
CAAAGGTGCCTCAAGGGTGTTTTCCCTACCGTTTTTTTTGTACTTTTTCT
CGCGGTTTGTTACAGTCGCGGTCTTTCAGACGCTGACTGGGATATGCGGA
TACGGGATGGAATGGGAGGTTCGATTTTGGCGTGATTTTCTTTGAAGCTT
GGAATGTTTAAGACTTACTGTGGGGTGCATCTTCCCGGAGATGTCGGTGG
CCACCGTACGGGCGGTGGCTAATCTCTTGCAGGCCCTACTGTAATGCTTG
TGTATCCCAGCTGGCTACGTTAGGAGGTGCTGGATTCCGTACAACACAAA
ATACAGCATGTGCGGAGAACAAATATGATTTCTCAACGAGGAGGCGTTAG
CCACCTATTAATCTGGTCCTCCCCTCCATGCACCACATGAACCACGAAGC
AGGTGTCTAATACGCTGGCGCCACTGGGTCACTCTTCATCTTCGCCAGCT
ACCTTGGCCCTCCCCGAGAGCCAGCAAGACGTGGCCGGCGGCGACGCTGC
TACCCCCAGGCGCGGCAGCGGGCGAATCATTCTCGCGGACGAGATCTCGA
ACCGACGGGGGAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig876:2662..4128+

>mRNA_E_fasciculatus_S2_contig876.16860.1 ID=mRNA_E_fasciculatus_S2_contig876.16860.1|Name=mRNA_E_fasciculatus_S2_contig876.16860.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig876:2662..4128+ (Ectocarpus fasciculatus EfasUO2)
ATGAGAACCACGTTCGACGAGTGGGACACCCTATTGTTCCCGAACCCGCC
ATCTCGGGTGGAAGGCGGCCCGAAGTTCGCCGAAACCAAGAAGAGGGAGT
CGTACTTCCAGGAGTTTTGCAGCGTGACGGAGAAGTTCGAGGAGAACCGT
GTCAGGGCACAGCGGCTTAGCGGCGAGGCTGCTGCCTTCGCCATGCAGCA
GGTGTCTAATACGCTGGCGCCACTGGGTCACTCTTCATCTTCGCCAGCTA
CCTTGGCCCTCCCCGAGAGCCAGCAAGACGTGGCCGGCGGCGACGCTGCT
ACCCCCAGGCGCGGCAGCGGGCGAATCATTCTCGCGGACGAGATCTCGAA
CCGACGGGGGAGGTGA
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